data_3QTT # _model_server_result.job_id VPl-qJY9ktqByWriwUbI1A _model_server_result.datetime_utc '2024-11-30 05:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qtt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":271}' # _entry.id 3QTT # _exptl.entry_id 3QTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QTT _cell.length_a 47.147 _cell.length_b 47.147 _cell.length_c 257.661 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 1 2 A,C,D,E,F,J 2 1 B,G,H,I,K 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -y+1,x,z-1/4 0 -1 0 1 0 0 0 0 1 47.147 0 -64.41525 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 3 1_555 A N MSE 4 A MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 4 A MSE 4 1_555 A N ILE 5 A ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C THR 31 A THR 31 1_555 A N MSE 32 A MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 32 A MSE 32 1_555 A N GLY 33 A GLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C GLY 130 A GLY 130 1_555 A N MSE 131 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 A C MSE 131 A MSE 131 1_555 A N LEU 132 A LEU 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C VAL 157 A VAL 157 1_555 A N MSE 158 A MSE 158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C VAL 157 A VAL 157 1_555 A N MSE 158 A MSE 158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 158 A MSE 158 1_555 A N LEU 159 A LEU 159 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C MSE 158 A MSE 158 1_555 A N LEU 159 A LEU 159 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C ALA 3 B ALA 3 1_555 B N MSE 4 B MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 B C MSE 4 B MSE 4 1_555 B N ILE 5 B ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C THR 31 B THR 31 1_555 B N MSE 32 B MSE 32 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C THR 31 B THR 31 1_555 B N MSE 32 B MSE 32 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale15 B C MSE 32 B MSE 32 1_555 B N GLY 33 B GLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale16 B C GLY 130 B GLY 130 1_555 B N MSE 131 B MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C MSE 131 B MSE 131 1_555 B N LEU 132 B LEU 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C VAL 157 B VAL 157 1_555 B N MSE 158 B MSE 158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale19 B C VAL 157 B VAL 157 1_555 B N MSE 158 B MSE 158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.323 ? covale ? covale20 B C MSE 158 B MSE 158 1_555 B N LEU 159 B LEU 159 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 B C MSE 158 B MSE 158 1_555 B N LEU 159 B LEU 159 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A O GLY 33 A GLY 33 1_555 E MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc2 A OH TYR 73 A TYR 73 1_555 E MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 C O1A ANP . A ANP 271 1_555 E MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3QTT _atom_sites.fract_transf_matrix[1][1] 0.02121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 271 271 ANP ANP . D 3 PRO A 1 274 274 PRO PRO . E 4 MG A 1 273 273 MG MG . F 5 BAL A 1 275 275 BAL BAL . G 3 PRO B 1 272 272 PRO PRO . H 2 ANP B 1 271 271 ANP ANP . I 5 BAL B 1 275 275 BAL BAL . J 6 HOH A 1 276 3 HOH HOH . J 6 HOH A 2 277 4 HOH HOH . J 6 HOH A 3 278 6 HOH HOH . J 6 HOH A 4 279 9 HOH HOH . J 6 HOH A 5 280 10 HOH HOH . J 6 HOH A 6 281 12 HOH HOH . J 6 HOH A 7 282 13 HOH HOH . J 6 HOH A 8 283 14 HOH HOH . J 6 HOH A 9 284 17 HOH HOH . J 6 HOH A 10 285 19 HOH HOH . J 6 HOH A 11 286 20 HOH HOH . J 6 HOH A 12 287 21 HOH HOH . J 6 HOH A 13 288 22 HOH HOH . J 6 HOH A 14 289 23 HOH HOH . J 6 HOH A 15 290 24 HOH HOH . J 6 HOH A 16 291 40 HOH HOH . J 6 HOH A 17 292 41 HOH HOH . J 6 HOH A 18 293 42 HOH HOH . J 6 HOH A 19 294 43 HOH HOH . J 6 HOH A 20 295 44 HOH HOH . J 6 HOH A 21 296 45 HOH HOH . J 6 HOH A 22 297 46 HOH HOH . J 6 HOH A 23 298 47 HOH HOH . J 6 HOH A 24 299 48 HOH HOH . J 6 HOH A 25 300 49 HOH HOH . J 6 HOH A 26 301 55 HOH HOH . J 6 HOH A 27 302 56 HOH HOH . J 6 HOH A 28 303 57 HOH HOH . J 6 HOH A 29 304 58 HOH HOH . J 6 HOH A 30 305 61 HOH HOH . J 6 HOH A 31 306 62 HOH HOH . J 6 HOH A 32 307 63 HOH HOH . J 6 HOH A 33 308 64 HOH HOH . J 6 HOH A 34 309 65 HOH HOH . J 6 HOH A 35 310 66 HOH HOH . J 6 HOH A 36 311 67 HOH HOH . J 6 HOH A 37 312 68 HOH HOH . J 6 HOH A 38 313 69 HOH HOH . J 6 HOH A 39 314 70 HOH HOH . J 6 HOH A 40 315 71 HOH HOH . J 6 HOH A 41 316 72 HOH HOH . J 6 HOH A 42 317 73 HOH HOH . J 6 HOH A 43 318 74 HOH HOH . J 6 HOH A 44 319 75 HOH HOH . J 6 HOH A 45 320 76 HOH HOH . J 6 HOH A 46 321 77 HOH HOH . J 6 HOH A 47 322 89 HOH HOH . J 6 HOH A 48 323 90 HOH HOH . J 6 HOH A 49 324 91 HOH HOH . J 6 HOH A 50 325 92 HOH HOH . J 6 HOH A 51 326 93 HOH HOH . J 6 HOH A 52 327 96 HOH HOH . J 6 HOH A 53 328 97 HOH HOH . K 6 HOH B 1 273 1 HOH HOH . K 6 HOH B 2 274 2 HOH HOH . K 6 HOH B 3 276 5 HOH HOH . K 6 HOH B 4 277 7 HOH HOH . K 6 HOH B 5 278 8 HOH HOH . K 6 HOH B 6 279 11 HOH HOH . K 6 HOH B 7 280 15 HOH HOH . K 6 HOH B 8 281 16 HOH HOH . K 6 HOH B 9 282 18 HOH HOH . K 6 HOH B 10 283 25 HOH HOH . K 6 HOH B 11 284 26 HOH HOH . K 6 HOH B 12 285 27 HOH HOH . K 6 HOH B 13 286 28 HOH HOH . K 6 HOH B 14 287 29 HOH HOH . K 6 HOH B 15 288 30 HOH HOH . K 6 HOH B 16 289 31 HOH HOH . K 6 HOH B 17 290 32 HOH HOH . K 6 HOH B 18 291 33 HOH HOH . K 6 HOH B 19 292 34 HOH HOH . K 6 HOH B 20 293 35 HOH HOH . K 6 HOH B 21 294 36 HOH HOH . K 6 HOH B 22 295 37 HOH HOH . K 6 HOH B 23 296 38 HOH HOH . K 6 HOH B 24 297 39 HOH HOH . K 6 HOH B 25 298 50 HOH HOH . K 6 HOH B 26 299 51 HOH HOH . K 6 HOH B 27 300 52 HOH HOH . K 6 HOH B 28 301 53 HOH HOH . K 6 HOH B 29 302 54 HOH HOH . K 6 HOH B 30 303 59 HOH HOH . K 6 HOH B 31 304 60 HOH HOH . K 6 HOH B 32 305 78 HOH HOH . K 6 HOH B 33 306 79 HOH HOH . K 6 HOH B 34 307 80 HOH HOH . K 6 HOH B 35 308 81 HOH HOH . K 6 HOH B 36 309 82 HOH HOH . K 6 HOH B 37 310 83 HOH HOH . K 6 HOH B 38 311 84 HOH HOH . K 6 HOH B 39 312 85 HOH HOH . K 6 HOH B 40 313 86 HOH HOH . K 6 HOH B 41 314 87 HOH HOH . K 6 HOH B 42 315 88 HOH HOH . K 6 HOH B 43 316 94 HOH HOH . K 6 HOH B 44 317 95 HOH HOH . K 6 HOH B 45 318 98 HOH HOH . K 6 HOH B 46 319 99 HOH HOH . K 6 HOH B 47 320 100 HOH HOH . K 6 HOH B 48 321 101 HOH HOH . K 6 HOH B 49 322 102 HOH HOH . K 6 HOH B 50 323 103 HOH HOH . K 6 HOH B 51 324 104 HOH HOH . K 6 HOH B 52 325 105 HOH HOH . K 6 HOH B 53 326 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 2 9.527 45.167 160.766 0.94 248.65 ? PG ANP 271 B 1 HETATM 2 O O1G ANP . . . H 2 10.232 45.808 159.647 0.98 247.88 ? O1G ANP 271 B 1 HETATM 3 O O2G ANP . . . H 2 8.617 46.217 161.544 0.9 107.45 ? O2G ANP 271 B 1 HETATM 4 O O3G ANP . . . H 2 8.714 43.938 160.275 0.95 44.54 ? O3G ANP 271 B 1 HETATM 5 P PB ANP . . . H 2 11.127 45.499 162.916 1 231.42 ? PB ANP 271 B 1 HETATM 6 O O1B ANP . . . H 2 10.144 46.632 163.4 0.94 226.68 ? O1B ANP 271 B 1 HETATM 7 O O2B ANP . . . H 2 12.45 46.148 162.48 0.97 231.67 ? O2B ANP 271 B 1 HETATM 8 N N3B ANP . . . H 2 10.566 44.437 161.723 1 59.05 ? N3B ANP 271 B 1 HETATM 9 P PA ANP . . . H 2 10.881 43.025 163.765 1 61.03 ? PA ANP 271 B 1 HETATM 10 O O1A ANP . . . H 2 10.699 42.386 165.045 0.92 88.6 ? O1A ANP 271 B 1 HETATM 11 O O2A ANP . . . H 2 9.612 42.807 163.013 1 66.34 ? O2A ANP 271 B 1 HETATM 12 O O3A ANP . . . H 2 11.3 44.541 164.084 1 229.78 ? O3A ANP 271 B 1 HETATM 13 O O5' ANP . . . H 2 11.988 42.255 163.032 1 55.31 ? O5' ANP 271 B 1 HETATM 14 C C5' ANP . . . H 2 12.392 41.001 163.44 1 51.4 ? C5' ANP 271 B 1 HETATM 15 C C4' ANP . . . H 2 13.578 40.501 162.754 1 56.16 ? C4' ANP 271 B 1 HETATM 16 O O4' ANP . . . H 2 13.254 40.299 161.417 0.82 64.8 ? O4' ANP 271 B 1 HETATM 17 C C3' ANP . . . H 2 14.675 41.521 162.783 1 55.3 ? C3' ANP 271 B 1 HETATM 18 O O3' ANP . . . H 2 15.896 40.876 162.854 1 49.29 ? O3' ANP 271 B 1 HETATM 19 C C2' ANP . . . H 2 14.533 42.185 161.534 0.97 58.24 ? C2' ANP 271 B 1 HETATM 20 O O2' ANP . . . H 2 15.675 42.895 161.102 1 51.24 ? O2' ANP 271 B 1 HETATM 21 C C1' ANP . . . H 2 14.123 41.092 160.602 0.93 61.61 ? C1' ANP 271 B 1 HETATM 22 N N9 ANP . . . H 2 13.509 41.654 159.381 1 53.87 ? N9 ANP 271 B 1 HETATM 23 C C8 ANP . . . H 2 12.558 42.576 159.385 1 49.92 ? C8 ANP 271 B 1 HETATM 24 N N7 ANP . . . H 2 12.254 42.899 158.142 1 49.42 ? N7 ANP 271 B 1 HETATM 25 C C5 ANP . . . H 2 13.042 42.186 157.33 1 52.05 ? C5 ANP 271 B 1 HETATM 26 C C6 ANP . . . H 2 13.141 42.147 155.942 1 47.44 ? C6 ANP 271 B 1 HETATM 27 N N6 ANP . . . H 2 12.316 42.968 155.17 1 52.3 ? N6 ANP 271 B 1 HETATM 28 N N1 ANP . . . H 2 14.021 41.322 155.393 1 49.3 ? N1 ANP 271 B 1 HETATM 29 C C2 ANP . . . H 2 14.794 40.545 156.162 1 51.95 ? C2 ANP 271 B 1 HETATM 30 N N3 ANP . . . H 2 14.715 40.564 157.509 1 55.46 ? N3 ANP 271 B 1 HETATM 31 C C4 ANP . . . H 2 13.855 41.386 158.112 1 55.79 ? C4 ANP 271 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #