data_3QU6
#
_model_server_result.job_id            Eewgm8XyOqkA1n_n8LVOtw 
_model_server_result.datetime_utc      '2024-11-24 22:37:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qu6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":122}' 
#
_entry.id    3QU6 
#
_exptl.entry_id    3QU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3QU6 
_cell.length_a            64.908 
_cell.length_b            64.908 
_cell.length_c            157.621 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,W 1 1 
B,N,O,P,Q,X 2 1 
C,R,S,T,U,V,Y 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 L N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 20 A ASP 17 1_555 E ZN ZN . A ZN 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc2 A OD2 ASP 53 A ASP 50 1_555 L NA NA . A NA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? 
metalc ? metalc3 A OE1 GLU 62 A GLU 59 1_555 D ZN ZN . A ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 59 1_555 D ZN ZN . A ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc5 A OE1 GLU 97 A GLU 94 1_555 G ZN ZN . A ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc6 A OE2 GLU 97 A GLU 94 1_555 O ZN ZN . B ZN 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc7 A OD1 ASP 102 A ASP 99 1_555 F ZN ZN . A ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc8 A ND1 HIS 104 A HIS 101 1_555 F ZN ZN . A ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc9 A OD1 ASP 105 A ASP 102 1_555 N ZN ZN . B ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc10 A NE2 HIS 107 A HIS 104 1_555 G ZN ZN . A ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc11 D ZN ZN . A ZN 114 1_555 C OD2 ASP 20 C ASP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc12 D ZN ZN . A ZN 114 1_555 Y O HOH . C HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc13 E ZN ZN . A ZN 115 1_555 W O HOH . A HOH 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc14 F ZN ZN . A ZN 116 1_555 B OE1 GLU 97 B GLU 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc15 G ZN ZN . A ZN 117 1_555 B OD1 ASP 105 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc16 K NA NA . A NA 121 1_555 W O HOH . A HOH 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? 
metalc ? metalc17 K NA NA . A NA 121 1_555 X O HOH . B HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc18 B OE2 GLU 97 B GLU 94 1_555 N ZN ZN . B ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc19 B OD1 ASP 102 B ASP 99 1_555 O ZN ZN . B ZN 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc20 B ND1 HIS 104 B HIS 101 1_555 O ZN ZN . B ZN 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc21 B NE2 HIS 107 B HIS 104 1_555 N ZN ZN . B ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc22 C OE1 GLU 62 C GLU 59 1_555 R ZN ZN . C ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc23 C OE2 GLU 62 C GLU 59 1_555 R ZN ZN . C ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc24 C OE1 GLU 97 C GLU 94 1_555 S ZN ZN . C ZN 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc25 C OE2 GLU 97 C GLU 94 1_555 T ZN ZN . C ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc26 C NE2 HIS 107 C HIS 104 1_555 S ZN ZN . C ZN 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc27 R ZN ZN . C ZN 114 1_555 Y O HOH . C HOH 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc28 T ZN ZN . C ZN 116 1_555 Y O HOH . C HOH 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3QU6 
_atom_sites.fract_transf_matrix[1][1]    0.015406 
_atom_sites.fract_transf_matrix[1][2]    0.008895 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01779 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006344 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 114 114 ZN ZN . 
E 2 ZN A 1 115 115 ZN ZN . 
F 2 ZN A 1 116 116 ZN ZN . 
G 2 ZN A 1 117 117 ZN ZN . 
H 3 CL A 1 118 118 CL CL . 
I 3 CL A 1 119 119 CL CL . 
J 3 CL A 1 120 120 CL CL . 
K 4 NA A 1 121 121 NA NA . 
L 4 NA A 1 122 122 NA NA . 
M 3 CL A 1 123 117 CL CL . 
N 2 ZN B 1 114 114 ZN ZN . 
O 2 ZN B 1 115 115 ZN ZN . 
P 3 CL B 1 116 116 CL CL . 
Q 4 NA B 1 117 117 NA NA . 
R 2 ZN C 1 114 114 ZN ZN . 
S 2 ZN C 1 115 115 ZN ZN . 
T 2 ZN C 1 116 116 ZN ZN . 
U 3 CL C 1 118 118 CL CL . 
V 3 CL C 1 119 119 CL CL . 
W 5 HOH A 1 124 124 HOH HOH . 
W 5 HOH A 2 125 125 HOH HOH . 
W 5 HOH A 3 126 126 HOH HOH . 
W 5 HOH A 4 127 127 HOH HOH . 
W 5 HOH A 5 128 128 HOH HOH . 
W 5 HOH A 6 129 129 HOH HOH . 
W 5 HOH A 7 130 130 HOH HOH . 
W 5 HOH A 8 131 131 HOH HOH . 
W 5 HOH A 9 132 132 HOH HOH . 
W 5 HOH A 10 133 133 HOH HOH . 
W 5 HOH A 11 134 134 HOH HOH . 
W 5 HOH A 12 135 135 HOH HOH . 
W 5 HOH A 13 136 136 HOH HOH . 
W 5 HOH A 14 137 137 HOH HOH . 
W 5 HOH A 15 138 138 HOH HOH . 
W 5 HOH A 16 139 139 HOH HOH . 
W 5 HOH A 17 140 140 HOH HOH . 
W 5 HOH A 18 141 141 HOH HOH . 
W 5 HOH A 19 142 142 HOH HOH . 
W 5 HOH A 20 143 143 HOH HOH . 
W 5 HOH A 21 144 144 HOH HOH . 
W 5 HOH A 22 145 145 HOH HOH . 
W 5 HOH A 23 146 123 HOH HOH . 
W 5 HOH A 24 147 147 HOH HOH . 
W 5 HOH A 25 148 148 HOH HOH . 
W 5 HOH A 26 149 149 HOH HOH . 
W 5 HOH A 27 150 150 HOH HOH . 
W 5 HOH A 28 151 151 HOH HOH . 
W 5 HOH A 29 152 152 HOH HOH . 
W 5 HOH A 30 153 153 HOH HOH . 
W 5 HOH A 31 154 154 HOH HOH . 
W 5 HOH A 32 155 155 HOH HOH . 
W 5 HOH A 33 156 156 HOH HOH . 
W 5 HOH A 34 157 157 HOH HOH . 
W 5 HOH A 35 158 158 HOH HOH . 
W 5 HOH A 36 159 159 HOH HOH . 
W 5 HOH A 37 160 160 HOH HOH . 
W 5 HOH A 38 161 161 HOH HOH . 
W 5 HOH A 39 162 162 HOH HOH . 
W 5 HOH A 40 164 164 HOH HOH . 
W 5 HOH A 41 165 165 HOH HOH . 
W 5 HOH A 42 166 166 HOH HOH . 
W 5 HOH A 43 167 167 HOH HOH . 
W 5 HOH A 44 168 168 HOH HOH . 
W 5 HOH A 45 169 169 HOH HOH . 
W 5 HOH A 46 170 170 HOH HOH . 
W 5 HOH A 47 171 171 HOH HOH . 
W 5 HOH A 48 172 172 HOH HOH . 
W 5 HOH A 49 173 173 HOH HOH . 
W 5 HOH A 50 174 174 HOH HOH . 
W 5 HOH A 51 175 175 HOH HOH . 
W 5 HOH A 52 176 176 HOH HOH . 
W 5 HOH A 53 177 177 HOH HOH . 
X 5 HOH B 1 118 118 HOH HOH . 
X 5 HOH B 2 119 119 HOH HOH . 
X 5 HOH B 3 120 120 HOH HOH . 
X 5 HOH B 4 121 121 HOH HOH . 
X 5 HOH B 5 122 122 HOH HOH . 
X 5 HOH B 6 123 123 HOH HOH . 
X 5 HOH B 7 124 124 HOH HOH . 
X 5 HOH B 8 125 125 HOH HOH . 
X 5 HOH B 9 126 126 HOH HOH . 
X 5 HOH B 10 127 127 HOH HOH . 
X 5 HOH B 11 128 128 HOH HOH . 
X 5 HOH B 12 129 129 HOH HOH . 
X 5 HOH B 13 130 130 HOH HOH . 
X 5 HOH B 14 131 131 HOH HOH . 
X 5 HOH B 15 132 132 HOH HOH . 
X 5 HOH B 16 133 133 HOH HOH . 
X 5 HOH B 17 134 134 HOH HOH . 
X 5 HOH B 18 135 135 HOH HOH . 
X 5 HOH B 19 136 136 HOH HOH . 
X 5 HOH B 20 137 137 HOH HOH . 
X 5 HOH B 21 138 138 HOH HOH . 
X 5 HOH B 22 139 139 HOH HOH . 
X 5 HOH B 23 140 140 HOH HOH . 
X 5 HOH B 24 141 141 HOH HOH . 
X 5 HOH B 25 142 142 HOH HOH . 
X 5 HOH B 26 143 143 HOH HOH . 
X 5 HOH B 27 144 144 HOH HOH . 
X 5 HOH B 28 145 145 HOH HOH . 
X 5 HOH B 29 146 146 HOH HOH . 
X 5 HOH B 30 147 147 HOH HOH . 
X 5 HOH B 31 148 148 HOH HOH . 
X 5 HOH B 32 149 149 HOH HOH . 
X 5 HOH B 33 150 150 HOH HOH . 
X 5 HOH B 34 151 151 HOH HOH . 
X 5 HOH B 35 152 152 HOH HOH . 
X 5 HOH B 36 153 153 HOH HOH . 
X 5 HOH B 37 154 154 HOH HOH . 
X 5 HOH B 38 155 155 HOH HOH . 
X 5 HOH B 39 156 156 HOH HOH . 
X 5 HOH B 40 157 157 HOH HOH . 
X 5 HOH B 41 158 158 HOH HOH . 
X 5 HOH B 42 159 159 HOH HOH . 
X 5 HOH B 43 160 160 HOH HOH . 
X 5 HOH B 44 161 161 HOH HOH . 
X 5 HOH B 45 163 163 HOH HOH . 
Y 5 HOH C 1 120 120 HOH HOH . 
Y 5 HOH C 2 121 121 HOH HOH . 
Y 5 HOH C 3 122 122 HOH HOH . 
Y 5 HOH C 4 123 123 HOH HOH . 
Y 5 HOH C 5 124 124 HOH HOH . 
Y 5 HOH C 6 125 125 HOH HOH . 
Y 5 HOH C 7 126 126 HOH HOH . 
Y 5 HOH C 8 127 127 HOH HOH . 
Y 5 HOH C 9 128 128 HOH HOH . 
Y 5 HOH C 10 129 129 HOH HOH . 
Y 5 HOH C 11 130 130 HOH HOH . 
Y 5 HOH C 12 131 131 HOH HOH . 
Y 5 HOH C 13 132 132 HOH HOH . 
Y 5 HOH C 14 133 133 HOH HOH . 
Y 5 HOH C 15 134 134 HOH HOH . 
Y 5 HOH C 16 135 135 HOH HOH . 
Y 5 HOH C 17 136 136 HOH HOH . 
Y 5 HOH C 18 137 137 HOH HOH . 
Y 5 HOH C 19 138 138 HOH HOH . 
Y 5 HOH C 20 139 139 HOH HOH . 
Y 5 HOH C 21 140 140 HOH HOH . 
Y 5 HOH C 22 141 141 HOH HOH . 
Y 5 HOH C 23 142 142 HOH HOH . 
Y 5 HOH C 24 143 143 HOH HOH . 
Y 5 HOH C 25 144 144 HOH HOH . 
Y 5 HOH C 26 145 145 HOH HOH . 
Y 5 HOH C 27 146 146 HOH HOH . 
Y 5 HOH C 28 147 147 HOH HOH . 
Y 5 HOH C 29 148 148 HOH HOH . 
Y 5 HOH C 30 149 149 HOH HOH . 
Y 5 HOH C 31 150 150 HOH HOH . 
Y 5 HOH C 32 151 151 HOH HOH . 
Y 5 HOH C 33 152 146 HOH HOH . 
Y 5 HOH C 34 153 153 HOH HOH . 
Y 5 HOH C 35 154 154 HOH HOH . 
Y 5 HOH C 36 155 155 HOH HOH . 
Y 5 HOH C 37 156 156 HOH HOH . 
Y 5 HOH C 38 157 157 HOH HOH . 
Y 5 HOH C 39 158 158 HOH HOH . 
Y 5 HOH C 40 159 159 HOH HOH . 
Y 5 HOH C 41 160 160 HOH HOH . 
Y 5 HOH C 42 161 161 HOH HOH . 
Y 5 HOH C 43 162 162 HOH HOH . 
Y 5 HOH C 44 163 163 HOH HOH . 
Y 5 HOH C 45 164 164 HOH HOH . 
Y 5 HOH C 46 165 165 HOH HOH . 
Y 5 HOH C 47 166 166 HOH HOH . 
Y 5 HOH C 48 167 167 HOH HOH . 
Y 5 HOH C 49 168 168 HOH HOH . 
Y 5 HOH C 50 169 169 HOH HOH . 
Y 5 HOH C 51 170 170 HOH HOH . 
Y 5 HOH C 52 171 171 HOH HOH . 
Y 5 HOH C 53 178 178 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               17.138 
_atom_site.Cartn_y               15.257 
_atom_site.Cartn_z               14.257 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        25.43 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           122 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#