data_3QU8
#
_model_server_result.job_id            3nPKaNzsLfVFVXc2BDon8g 
_model_server_result.datetime_utc      '2024-11-28 08:02:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qu8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":501}' 
#
_entry.id    3QU8 
#
_exptl.entry_id    3QU8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              214.22 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(4-nitrobenzyl)pyridine 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3QU8 
_cell.length_a            101.88 
_cell.length_b            101.88 
_cell.length_c            299.509 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QU8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,Z 1 1 
B,J,K,L,M,AA 2 1 
C,N,O,P,BA 3 1 
D,Q,R,S,T,CA 4 1 
E,U,V,W,DA 5 1 
F,X,Y,EA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
? 3 O N N 
? 3 R N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 G FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 G FE HEM . A HEM 500 1_555 H NAL 3QU . A 3QU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc3 B SG CYS 417 B CYS 436 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc4 J FE HEM . B HEM 500 1_555 K NAL 3QU . B 3QU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc5 C SG CYS 417 C CYS 436 1_555 N FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc6 N FE HEM . C HEM 500 1_555 O NAL 3QU . C 3QU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc7 D SG CYS 417 D CYS 436 1_555 Q FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc8 Q FE HEM . D HEM 500 1_555 R NAL 3QU . D 3QU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc9 E SG CYS 417 E CYS 436 1_555 U FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc10 U FE HEM . E HEM 500 1_555 V NAL 3QU . E 3QU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc11 F SG CYS 417 F CYS 436 1_555 X FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
#
_chem_comp.formula           'C12 H10 N2 O2' 
_chem_comp.formula_weight    214.22 
_chem_comp.id                3QU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(4-nitrobenzyl)pyridine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA NAP 3QU doub 1 n n 
CAC NAL 3QU sing 2 n y 
CAD NAL 3QU doub 3 n y 
CAE CAC 3QU doub 4 n y 
CAF CAD 3QU sing 5 n y 
CAH CAN 3QU doub 6 n y 
CAI CAG 3QU doub 7 n y 
CAJ CAH 3QU sing 8 n y 
CAJ CAO 3QU doub 9 n y 
CAK CAM 3QU sing 10 n n 
CAM CAE 3QU sing 11 n y 
CAM CAF 3QU doub 12 n y 
CAN CAG 3QU sing 13 n y 
CAN CAK 3QU sing 14 n n 
CAO CAI 3QU sing 15 n y 
NAP OAB 3QU sing 16 n n 
NAP CAO 3QU sing 17 n n 
CAC HAC 3QU sing 18 n n 
CAD HAD 3QU sing 19 n n 
CAE HAE 3QU sing 20 n n 
CAF HAF 3QU sing 21 n n 
CAG HAG 3QU sing 22 n n 
CAH HAH 3QU sing 23 n n 
CAI HAI 3QU sing 24 n n 
CAJ HAJ 3QU sing 25 n n 
CAK HAK 3QU sing 26 n n 
CAK HAKA 3QU sing 27 n n 
#
_atom_sites.entry_id                     3QU8 
_atom_sites.fract_transf_matrix[1][1]    0.009815 
_atom_sites.fract_transf_matrix[1][2]    0.005667 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEM A 1 500 500 HEM HEM . 
H 3 3QU A 1 501 501 3QU 3QU . 
I 4 CM5 A 1 601 601 CM5 CM5 . 
J 2 HEM B 1 500 500 HEM HEM . 
K 3 3QU B 1 501 501 3QU 3QU . 
L 4 CM5 B 1 602 602 CM5 CM5 . 
M 4 CM5 B 1 608 608 CM5 CM5 . 
N 2 HEM C 1 500 500 HEM HEM . 
O 3 3QU C 1 501 501 3QU 3QU . 
P 4 CM5 C 1 603 603 CM5 CM5 . 
Q 2 HEM D 1 500 500 HEM HEM . 
R 3 3QU D 1 501 501 3QU 3QU . 
S 4 CM5 D 1 604 604 CM5 CM5 . 
T 4 CM5 D 1 607 607 CM5 CM5 . 
U 2 HEM E 1 500 500 HEM HEM . 
V 3 3QU E 1 501 501 3QU 3QU . 
W 4 CM5 E 1 605 605 CM5 CM5 . 
X 2 HEM F 1 500 500 HEM HEM . 
Y 4 CM5 F 1 606 606 CM5 CM5 . 
Z 5 HOH A 1 3 3 HOH HOH . 
Z 5 HOH A 2 4 4 HOH HOH . 
Z 5 HOH A 3 496 27 HOH HOH . 
Z 5 HOH A 4 497 30 HOH HOH . 
Z 5 HOH A 5 498 31 HOH HOH . 
Z 5 HOH A 6 499 58 HOH HOH . 
Z 5 HOH A 7 502 61 HOH HOH . 
Z 5 HOH A 8 503 64 HOH HOH . 
Z 5 HOH A 9 504 65 HOH HOH . 
Z 5 HOH A 10 505 66 HOH HOH . 
Z 5 HOH A 11 506 67 HOH HOH . 
Z 5 HOH A 12 507 68 HOH HOH . 
Z 5 HOH A 13 508 74 HOH HOH . 
Z 5 HOH A 14 509 101 HOH HOH . 
Z 5 HOH A 15 510 102 HOH HOH . 
Z 5 HOH A 16 511 103 HOH HOH . 
Z 5 HOH A 17 512 104 HOH HOH . 
Z 5 HOH A 18 513 105 HOH HOH . 
Z 5 HOH A 19 514 106 HOH HOH . 
Z 5 HOH A 20 515 108 HOH HOH . 
Z 5 HOH A 21 516 109 HOH HOH . 
Z 5 HOH A 22 517 111 HOH HOH . 
Z 5 HOH A 23 518 148 HOH HOH . 
Z 5 HOH A 24 519 1 HOH HOH . 
Z 5 HOH A 25 520 2 HOH HOH . 
AA 5 HOH B 1 5 5 HOH HOH . 
AA 5 HOH B 2 6 6 HOH HOH . 
AA 5 HOH B 3 7 7 HOH HOH . 
AA 5 HOH B 4 496 32 HOH HOH . 
AA 5 HOH B 5 497 33 HOH HOH . 
AA 5 HOH B 6 498 34 HOH HOH . 
AA 5 HOH B 7 499 55 HOH HOH . 
AA 5 HOH B 8 502 69 HOH HOH . 
AA 5 HOH B 9 503 70 HOH HOH . 
AA 5 HOH B 10 504 71 HOH HOH . 
AA 5 HOH B 11 505 72 HOH HOH . 
AA 5 HOH B 12 506 73 HOH HOH . 
AA 5 HOH B 13 507 98 HOH HOH . 
AA 5 HOH B 14 508 112 HOH HOH . 
AA 5 HOH B 15 509 113 HOH HOH . 
AA 5 HOH B 16 510 114 HOH HOH . 
AA 5 HOH B 17 511 116 HOH HOH . 
AA 5 HOH B 18 512 117 HOH HOH . 
AA 5 HOH B 19 513 118 HOH HOH . 
AA 5 HOH B 20 514 119 HOH HOH . 
AA 5 HOH B 21 515 149 HOH HOH . 
AA 5 HOH B 22 516 150 HOH HOH . 
AA 5 HOH B 23 517 160 HOH HOH . 
BA 5 HOH C 1 8 8 HOH HOH . 
BA 5 HOH C 2 9 9 HOH HOH . 
BA 5 HOH C 3 10 10 HOH HOH . 
BA 5 HOH C 4 11 11 HOH HOH . 
BA 5 HOH C 5 496 28 HOH HOH . 
BA 5 HOH C 6 497 29 HOH HOH . 
BA 5 HOH C 7 498 37 HOH HOH . 
BA 5 HOH C 8 499 57 HOH HOH . 
BA 5 HOH C 9 502 62 HOH HOH . 
BA 5 HOH C 10 503 63 HOH HOH . 
BA 5 HOH C 11 504 75 HOH HOH . 
BA 5 HOH C 12 505 76 HOH HOH . 
BA 5 HOH C 13 506 77 HOH HOH . 
BA 5 HOH C 14 507 78 HOH HOH . 
BA 5 HOH C 15 508 79 HOH HOH . 
BA 5 HOH C 16 509 80 HOH HOH . 
BA 5 HOH C 17 510 81 HOH HOH . 
BA 5 HOH C 18 511 82 HOH HOH . 
BA 5 HOH C 19 512 83 HOH HOH . 
BA 5 HOH C 20 513 99 HOH HOH . 
BA 5 HOH C 21 514 120 HOH HOH . 
BA 5 HOH C 22 515 121 HOH HOH . 
BA 5 HOH C 23 516 122 HOH HOH . 
BA 5 HOH C 24 517 123 HOH HOH . 
BA 5 HOH C 25 518 124 HOH HOH . 
BA 5 HOH C 26 519 125 HOH HOH . 
BA 5 HOH C 27 520 145 HOH HOH . 
BA 5 HOH C 28 521 146 HOH HOH . 
BA 5 HOH C 29 522 147 HOH HOH . 
CA 5 HOH D 1 12 12 HOH HOH . 
CA 5 HOH D 2 13 13 HOH HOH . 
CA 5 HOH D 3 14 14 HOH HOH . 
CA 5 HOH D 4 15 15 HOH HOH . 
CA 5 HOH D 5 16 16 HOH HOH . 
CA 5 HOH D 6 17 17 HOH HOH . 
CA 5 HOH D 7 18 18 HOH HOH . 
CA 5 HOH D 8 19 19 HOH HOH . 
CA 5 HOH D 9 496 20 HOH HOH . 
CA 5 HOH D 10 497 39 HOH HOH . 
CA 5 HOH D 11 498 40 HOH HOH . 
CA 5 HOH D 12 499 41 HOH HOH . 
CA 5 HOH D 13 502 42 HOH HOH . 
CA 5 HOH D 14 503 43 HOH HOH . 
CA 5 HOH D 15 504 44 HOH HOH . 
CA 5 HOH D 16 505 45 HOH HOH . 
CA 5 HOH D 17 506 46 HOH HOH . 
CA 5 HOH D 18 507 56 HOH HOH . 
CA 5 HOH D 19 508 59 HOH HOH . 
CA 5 HOH D 20 509 60 HOH HOH . 
CA 5 HOH D 21 510 84 HOH HOH . 
CA 5 HOH D 22 511 85 HOH HOH . 
CA 5 HOH D 23 512 86 HOH HOH . 
CA 5 HOH D 24 513 87 HOH HOH . 
CA 5 HOH D 25 514 88 HOH HOH . 
CA 5 HOH D 26 515 89 HOH HOH . 
CA 5 HOH D 27 516 90 HOH HOH . 
CA 5 HOH D 28 517 127 HOH HOH . 
CA 5 HOH D 29 518 128 HOH HOH . 
CA 5 HOH D 30 519 129 HOH HOH . 
CA 5 HOH D 31 520 130 HOH HOH . 
CA 5 HOH D 32 521 131 HOH HOH . 
CA 5 HOH D 33 522 132 HOH HOH . 
CA 5 HOH D 34 523 133 HOH HOH . 
CA 5 HOH D 35 524 134 HOH HOH . 
CA 5 HOH D 36 525 135 HOH HOH . 
CA 5 HOH D 37 526 136 HOH HOH . 
CA 5 HOH D 38 527 137 HOH HOH . 
DA 5 HOH E 1 496 21 HOH HOH . 
DA 5 HOH E 2 497 22 HOH HOH . 
DA 5 HOH E 3 498 23 HOH HOH . 
DA 5 HOH E 4 499 24 HOH HOH . 
DA 5 HOH E 5 502 25 HOH HOH . 
DA 5 HOH E 6 503 26 HOH HOH . 
DA 5 HOH E 7 504 47 HOH HOH . 
DA 5 HOH E 8 505 48 HOH HOH . 
DA 5 HOH E 9 506 49 HOH HOH . 
DA 5 HOH E 10 507 50 HOH HOH . 
DA 5 HOH E 11 508 51 HOH HOH . 
DA 5 HOH E 12 509 52 HOH HOH . 
DA 5 HOH E 13 510 91 HOH HOH . 
DA 5 HOH E 14 511 92 HOH HOH . 
DA 5 HOH E 15 512 93 HOH HOH . 
DA 5 HOH E 16 513 139 HOH HOH . 
DA 5 HOH E 17 514 140 HOH HOH . 
DA 5 HOH E 18 515 141 HOH HOH . 
DA 5 HOH E 19 516 151 HOH HOH . 
DA 5 HOH E 20 517 152 HOH HOH . 
DA 5 HOH E 21 518 153 HOH HOH . 
DA 5 HOH E 22 519 154 HOH HOH . 
DA 5 HOH E 23 520 155 HOH HOH . 
EA 5 HOH F 1 496 53 HOH HOH . 
EA 5 HOH F 2 497 54 HOH HOH . 
EA 5 HOH F 3 498 94 HOH HOH . 
EA 5 HOH F 4 499 95 HOH HOH . 
EA 5 HOH F 5 501 96 HOH HOH . 
EA 5 HOH F 6 502 97 HOH HOH . 
EA 5 HOH F 7 503 142 HOH HOH . 
EA 5 HOH F 8 504 143 HOH HOH . 
EA 5 HOH F 9 505 156 HOH HOH . 
EA 5 HOH F 10 506 157 HOH HOH . 
EA 5 HOH F 11 507 158 HOH HOH . 
EA 5 HOH F 12 508 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC 3QU . . . R 3 44.699 -18.791 10.267 1 49.74 ? CAC 3QU 501 D 1 
HETATM 2 C CAD 3QU . . . R 3 42.725 -19.225 11.432 1 47.92 ? CAD 3QU 501 D 1 
HETATM 3 C CAE 3QU . . . R 3 43.985 -18.44 9.128 1 49.68 ? CAE 3QU 501 D 1 
HETATM 4 C CAF 3QU . . . R 3 41.96 -18.885 10.322 1 48.99 ? CAF 3QU 501 D 1 
HETATM 5 C CAG 3QU . . . R 3 42.804 -16.256 6.573 1 52.17 ? CAG 3QU 501 D 1 
HETATM 6 C CAH 3QU . . . R 3 41.36 -15.684 8.412 1 51.45 ? CAH 3QU 501 D 1 
HETATM 7 C CAI 3QU . . . R 3 42.986 -14.906 6.296 1 52.27 ? CAI 3QU 501 D 1 
HETATM 8 C CAJ 3QU . . . R 3 41.542 -14.334 8.135 1 54.85 ? CAJ 3QU 501 D 1 
HETATM 9 C CAK 3QU . . . R 3 41.794 -18.113 7.933 1 48.66 ? CAK 3QU 501 D 1 
HETATM 10 N NAL 3QU . . . R 3 44.062 -19.171 11.382 1 49.68 ? NAL 3QU 501 D 1 
HETATM 11 C CAM 3QU . . . R 3 42.598 -18.488 9.155 1 49.57 ? CAM 3QU 501 D 1 
HETATM 12 C CAN 3QU . . . R 3 41.991 -16.645 7.631 1 49.75 ? CAN 3QU 501 D 1 
HETATM 13 C CAO 3QU . . . R 3 42.355 -13.945 7.077 1 54.98 ? CAO 3QU 501 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           13 
#