data_3QUD
#
_model_server_result.job_id            XAnkdwQAp56NLD0DcHbCPg 
_model_server_result.datetime_utc      '2024-11-26 06:24:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":362}' 
#
_entry.id    3QUD 
#
_exptl.entry_id    3QUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QUD 
_cell.length_a            66.779 
_cell.length_b            73.368 
_cell.length_c            79.591 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3QUD 
_atom_sites.fract_transf_matrix[1][1]    0.014975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 1000 1000 BOG BOG . 
C 3 N3F A 1 361 1 N3F DRG . 
D 2 BOG A 1 362 1000 BOG BOG . 
E 4 HOH A 1 363 1 HOH HOH . 
E 4 HOH A 2 364 2 HOH HOH . 
E 4 HOH A 3 365 3 HOH HOH . 
E 4 HOH A 4 366 4 HOH HOH . 
E 4 HOH A 5 367 7 HOH HOH . 
E 4 HOH A 6 368 8 HOH HOH . 
E 4 HOH A 7 369 9 HOH HOH . 
E 4 HOH A 8 370 10 HOH HOH . 
E 4 HOH A 9 371 12 HOH HOH . 
E 4 HOH A 10 372 13 HOH HOH . 
E 4 HOH A 11 373 14 HOH HOH . 
E 4 HOH A 12 374 15 HOH HOH . 
E 4 HOH A 13 375 16 HOH HOH . 
E 4 HOH A 14 376 17 HOH HOH . 
E 4 HOH A 15 377 20 HOH HOH . 
E 4 HOH A 16 378 21 HOH HOH . 
E 4 HOH A 17 379 22 HOH HOH . 
E 4 HOH A 18 380 23 HOH HOH . 
E 4 HOH A 19 381 24 HOH HOH . 
E 4 HOH A 20 382 25 HOH HOH . 
E 4 HOH A 21 383 26 HOH HOH . 
E 4 HOH A 22 384 27 HOH HOH . 
E 4 HOH A 23 385 28 HOH HOH . 
E 4 HOH A 24 386 29 HOH HOH . 
E 4 HOH A 25 387 30 HOH HOH . 
E 4 HOH A 26 388 32 HOH HOH . 
E 4 HOH A 27 389 33 HOH HOH . 
E 4 HOH A 28 390 34 HOH HOH . 
E 4 HOH A 29 391 35 HOH HOH . 
E 4 HOH A 30 392 36 HOH HOH . 
E 4 HOH A 31 393 37 HOH HOH . 
E 4 HOH A 32 394 38 HOH HOH . 
E 4 HOH A 33 395 39 HOH HOH . 
E 4 HOH A 34 396 40 HOH HOH . 
E 4 HOH A 35 397 41 HOH HOH . 
E 4 HOH A 36 398 42 HOH HOH . 
E 4 HOH A 37 399 43 HOH HOH . 
E 4 HOH A 38 400 44 HOH HOH . 
E 4 HOH A 39 401 45 HOH HOH . 
E 4 HOH A 40 402 46 HOH HOH . 
E 4 HOH A 41 403 47 HOH HOH . 
E 4 HOH A 42 404 48 HOH HOH . 
E 4 HOH A 43 405 49 HOH HOH . 
E 4 HOH A 44 406 50 HOH HOH . 
E 4 HOH A 45 407 52 HOH HOH . 
E 4 HOH A 46 408 53 HOH HOH . 
E 4 HOH A 47 409 54 HOH HOH . 
E 4 HOH A 48 410 56 HOH HOH . 
E 4 HOH A 49 411 57 HOH HOH . 
E 4 HOH A 50 412 58 HOH HOH . 
E 4 HOH A 51 413 59 HOH HOH . 
E 4 HOH A 52 414 60 HOH HOH . 
E 4 HOH A 53 415 61 HOH HOH . 
E 4 HOH A 54 416 62 HOH HOH . 
E 4 HOH A 55 417 63 HOH HOH . 
E 4 HOH A 56 418 64 HOH HOH . 
E 4 HOH A 57 419 65 HOH HOH . 
E 4 HOH A 58 420 66 HOH HOH . 
E 4 HOH A 59 421 67 HOH HOH . 
E 4 HOH A 60 422 68 HOH HOH . 
E 4 HOH A 61 423 69 HOH HOH . 
E 4 HOH A 62 424 70 HOH HOH . 
E 4 HOH A 63 425 71 HOH HOH . 
E 4 HOH A 64 426 72 HOH HOH . 
E 4 HOH A 65 427 73 HOH HOH . 
E 4 HOH A 66 428 74 HOH HOH . 
E 4 HOH A 67 429 75 HOH HOH . 
E 4 HOH A 68 430 76 HOH HOH . 
E 4 HOH A 69 431 77 HOH HOH . 
E 4 HOH A 70 432 78 HOH HOH . 
E 4 HOH A 71 433 79 HOH HOH . 
E 4 HOH A 72 434 80 HOH HOH . 
E 4 HOH A 73 435 81 HOH HOH . 
E 4 HOH A 74 436 82 HOH HOH . 
E 4 HOH A 75 437 83 HOH HOH . 
E 4 HOH A 76 438 84 HOH HOH . 
E 4 HOH A 77 439 85 HOH HOH . 
E 4 HOH A 78 440 86 HOH HOH . 
E 4 HOH A 79 441 87 HOH HOH . 
E 4 HOH A 80 442 88 HOH HOH . 
E 4 HOH A 81 443 91 HOH HOH . 
E 4 HOH A 82 444 92 HOH HOH . 
E 4 HOH A 83 445 93 HOH HOH . 
E 4 HOH A 84 446 94 HOH HOH . 
E 4 HOH A 85 447 95 HOH HOH . 
E 4 HOH A 86 448 96 HOH HOH . 
E 4 HOH A 87 449 97 HOH HOH . 
E 4 HOH A 88 450 98 HOH HOH . 
E 4 HOH A 89 451 99 HOH HOH . 
E 4 HOH A 90 452 100 HOH HOH . 
E 4 HOH A 91 453 101 HOH HOH . 
E 4 HOH A 92 454 102 HOH HOH . 
E 4 HOH A 93 455 103 HOH HOH . 
E 4 HOH A 94 456 105 HOH HOH . 
E 4 HOH A 95 457 107 HOH HOH . 
E 4 HOH A 96 458 108 HOH HOH . 
E 4 HOH A 97 459 109 HOH HOH . 
E 4 HOH A 98 460 110 HOH HOH . 
E 4 HOH A 99 461 111 HOH HOH . 
E 4 HOH A 100 462 112 HOH HOH . 
E 4 HOH A 101 463 113 HOH HOH . 
E 4 HOH A 102 464 114 HOH HOH . 
E 4 HOH A 103 465 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . D 2 5.235 -10.221 -13.725 1 46.02 ? C1 BOG 362 A 1 
HETATM 2 O O1 BOG . . . D 2 5.205 -9.026 -12.972 1 42.14 ? O1 BOG 362 A 1 
HETATM 3 C C2 BOG . . . D 2 6.414 -11.078 -13.217 1 49 ? C2 BOG 362 A 1 
HETATM 4 O O2 BOG . . . D 2 7.66 -10.452 -13.533 1 49.94 ? O2 BOG 362 A 1 
HETATM 5 C C3 BOG . . . D 2 6.404 -12.48 -13.845 1 50.21 ? C3 BOG 362 A 1 
HETATM 6 O O3 BOG . . . D 2 7.416 -13.278 -13.205 1 50.61 ? O3 BOG 362 A 1 
HETATM 7 C C4 BOG . . . D 2 5 -13.135 -13.741 1 50.2 ? C4 BOG 362 A 1 
HETATM 8 O O4 BOG . . . D 2 4.958 -14.369 -14.48 1 50.95 ? O4 BOG 362 A 1 
HETATM 9 C C5 BOG . . . D 2 3.932 -12.169 -14.296 1 49.37 ? C5 BOG 362 A 1 
HETATM 10 O O5 BOG . . . D 2 3.985 -10.931 -13.517 1 47.69 ? O5 BOG 362 A 1 
HETATM 11 C C6 BOG . . . D 2 2.516 -12.781 -14.31 1 49.28 ? C6 BOG 362 A 1 
HETATM 12 O O6 BOG . . . D 2 1.922 -12.681 -13.015 1 48.62 ? O6 BOG 362 A 1 
HETATM 13 C C1' BOG . . . D 2 4.462 -7.988 -13.636 1 38.95 ? C1' BOG 362 A 1 
HETATM 14 C C2' BOG . . . D 2 4.931 -6.602 -13.175 1 35.77 ? C2' BOG 362 A 1 
HETATM 15 C C3' BOG . . . D 2 4.58 -6.354 -11.705 1 33.53 ? C3' BOG 362 A 1 
HETATM 16 C C4' BOG . . . D 2 5.143 -5.024 -11.184 1 32.72 ? C4' BOG 362 A 1 
HETATM 17 C C5' BOG . . . D 2 4.584 -3.81 -11.949 1 31.37 ? C5' BOG 362 A 1 
HETATM 18 C C6' BOG . . . D 2 5.141 -2.495 -11.401 1 32.92 ? C6' BOG 362 A 1 
HETATM 19 C C7' BOG . . . D 2 4.606 -1.302 -12.203 1 31.72 ? C7' BOG 362 A 1 
HETATM 20 C C8' BOG . . . D 2 3.175 -0.969 -11.758 1 32.65 ? C8' BOG 362 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#