data_3QUI
#
_model_server_result.job_id            fOkTpxNkXEho8XTXtVjd3g 
_model_server_result.datetime_utc      '2024-12-21 12:55:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qui 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":101}' 
#
_entry.id    3QUI 
#
_exptl.entry_id    3QUI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QUI 
_cell.length_a            61.083 
_cell.length_b            75.862 
_cell.length_c            93.437 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QUI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 17 n n 
PB O2B ADP sing 18 n n 
PB O3B ADP sing 19 n n 
PB O3A ADP sing 20 n n 
O2B HOB2 ADP sing 21 n n 
O3B HOB3 ADP sing 22 n n 
PA O1A ADP doub 23 n n 
PA O2A ADP sing 24 n n 
PA O3A ADP sing 25 n n 
PA O5' ADP sing 26 n n 
O2A HOA2 ADP sing 27 n n 
O5' C5' ADP sing 28 n n 
C5' C4' ADP sing 29 n n 
C5' "H5'1" ADP sing 30 n n 
C5' "H5'2" ADP sing 31 n n 
C4' O4' ADP sing 32 n n 
C4' C3' ADP sing 33 n n 
C4' H4' ADP sing 34 n n 
O4' C1' ADP sing 35 n n 
C3' O3' ADP sing 36 n n 
C3' C2' ADP sing 37 n n 
C3' H3' ADP sing 38 n n 
O3' HO3' ADP sing 39 n n 
C2' O2' ADP sing 40 n n 
C2' C1' ADP sing 41 n n 
C2' H2' ADP sing 42 n n 
O2' HO2' ADP sing 43 n n 
C1' N9 ADP sing 44 n n 
C1' H1' ADP sing 45 n n 
N9 C8 ADP sing 46 n y 
N9 C4 ADP sing 47 n y 
C8 N7 ADP doub 48 n y 
C8 H8 ADP sing 49 n n 
N7 C5 ADP sing 50 n y 
C5 C6 ADP sing 51 n y 
C5 C4 ADP doub 52 n y 
C6 N6 ADP sing 53 n n 
C6 N1 ADP doub 54 n y 
N6 HN61 ADP sing 55 n n 
N6 HN62 ADP sing 56 n n 
N1 C2 ADP sing 57 n y 
C2 N3 ADP doub 58 n y 
C2 H2 ADP sing 59 n n 
N3 C4 ADP sing 60 n y 
#
_atom_sites.entry_id                     3QUI 
_atom_sites.fract_transf_matrix[1][1]    0.016371 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010702 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP A 1 101 101 ADP ADP . 
H 2 ADP B 1 101 101 ADP ADP . 
I 2 ADP C 1 101 101 ADP ADP . 
J 3 ANP D 1 101 101 ANP ANP . 
K 3 ANP D 1 102 102 ANP ANP . 
L 4 PEG D 1 103 103 PEG PEG . 
M 3 ANP E 1 101 101 ANP ANP . 
N 5 ADE F 1 101 101 ADE AD . 
O 6 HOH A 1 83 4 HOH HOH . 
O 6 HOH A 2 84 5 HOH HOH . 
O 6 HOH A 3 85 11 HOH HOH . 
O 6 HOH A 4 86 15 HOH HOH . 
O 6 HOH A 5 87 18 HOH HOH . 
O 6 HOH A 6 88 19 HOH HOH . 
O 6 HOH A 7 89 89 HOH HOH . 
O 6 HOH A 8 90 90 HOH HOH . 
O 6 HOH A 9 91 22 HOH HOH . 
O 6 HOH A 10 92 40 HOH HOH . 
O 6 HOH A 11 93 93 HOH HOH . 
O 6 HOH A 12 94 42 HOH HOH . 
O 6 HOH A 13 95 43 HOH HOH . 
O 6 HOH A 14 96 45 HOH HOH . 
O 6 HOH A 15 97 52 HOH HOH . 
O 6 HOH A 16 98 54 HOH HOH . 
O 6 HOH A 17 99 99 HOH HOH . 
O 6 HOH A 18 100 56 HOH HOH . 
O 6 HOH A 19 102 59 HOH HOH . 
O 6 HOH A 20 103 64 HOH HOH . 
O 6 HOH A 21 104 67 HOH HOH . 
O 6 HOH A 22 105 69 HOH HOH . 
O 6 HOH A 23 116 116 HOH HOH . 
O 6 HOH A 24 122 122 HOH HOH . 
O 6 HOH A 25 125 125 HOH HOH . 
O 6 HOH A 26 126 126 HOH HOH . 
O 6 HOH A 27 137 137 HOH HOH . 
O 6 HOH A 28 138 138 HOH HOH . 
O 6 HOH A 29 143 143 HOH HOH . 
O 6 HOH A 30 159 159 HOH HOH . 
O 6 HOH A 31 161 161 HOH HOH . 
O 6 HOH A 32 169 169 HOH HOH . 
O 6 HOH A 33 172 172 HOH HOH . 
O 6 HOH A 34 180 180 HOH HOH . 
O 6 HOH A 35 181 181 HOH HOH . 
O 6 HOH A 36 187 187 HOH HOH . 
O 6 HOH A 37 211 211 HOH HOH . 
P 6 HOH B 1 83 1 HOH HOH . 
P 6 HOH B 2 84 3 HOH HOH . 
P 6 HOH B 3 85 7 HOH HOH . 
P 6 HOH B 4 86 21 HOH HOH . 
P 6 HOH B 5 87 26 HOH HOH . 
P 6 HOH B 6 88 88 HOH HOH . 
P 6 HOH B 7 89 38 HOH HOH . 
P 6 HOH B 8 90 82 HOH HOH . 
P 6 HOH B 9 91 91 HOH HOH . 
P 6 HOH B 10 92 92 HOH HOH . 
P 6 HOH B 11 102 102 HOH HOH . 
P 6 HOH B 12 113 113 HOH HOH . 
P 6 HOH B 13 115 115 HOH HOH . 
P 6 HOH B 14 120 120 HOH HOH . 
P 6 HOH B 15 127 127 HOH HOH . 
P 6 HOH B 16 131 131 HOH HOH . 
P 6 HOH B 17 133 133 HOH HOH . 
P 6 HOH B 18 142 142 HOH HOH . 
P 6 HOH B 19 145 145 HOH HOH . 
P 6 HOH B 20 164 164 HOH HOH . 
P 6 HOH B 21 165 165 HOH HOH . 
P 6 HOH B 22 168 168 HOH HOH . 
P 6 HOH B 23 170 170 HOH HOH . 
P 6 HOH B 24 173 173 HOH HOH . 
P 6 HOH B 25 182 182 HOH HOH . 
P 6 HOH B 26 183 183 HOH HOH . 
P 6 HOH B 27 189 189 HOH HOH . 
P 6 HOH B 28 195 195 HOH HOH . 
P 6 HOH B 29 201 201 HOH HOH . 
P 6 HOH B 30 202 202 HOH HOH . 
Q 6 HOH C 1 83 10 HOH HOH . 
Q 6 HOH C 2 84 33 HOH HOH . 
Q 6 HOH C 3 85 36 HOH HOH . 
Q 6 HOH C 4 86 47 HOH HOH . 
Q 6 HOH C 5 87 49 HOH HOH . 
Q 6 HOH C 6 88 50 HOH HOH . 
Q 6 HOH C 7 89 58 HOH HOH . 
Q 6 HOH C 8 90 65 HOH HOH . 
Q 6 HOH C 9 91 70 HOH HOH . 
Q 6 HOH C 10 92 73 HOH HOH . 
Q 6 HOH C 11 93 74 HOH HOH . 
Q 6 HOH C 12 94 75 HOH HOH . 
Q 6 HOH C 13 95 76 HOH HOH . 
Q 6 HOH C 14 96 81 HOH HOH . 
Q 6 HOH C 15 103 103 HOH HOH . 
Q 6 HOH C 16 104 104 HOH HOH . 
Q 6 HOH C 17 105 105 HOH HOH . 
Q 6 HOH C 18 109 109 HOH HOH . 
Q 6 HOH C 19 110 110 HOH HOH . 
Q 6 HOH C 20 111 111 HOH HOH . 
Q 6 HOH C 21 123 123 HOH HOH . 
Q 6 HOH C 22 129 129 HOH HOH . 
Q 6 HOH C 23 134 134 HOH HOH . 
Q 6 HOH C 24 141 141 HOH HOH . 
Q 6 HOH C 25 154 154 HOH HOH . 
Q 6 HOH C 26 160 160 HOH HOH . 
Q 6 HOH C 27 177 177 HOH HOH . 
Q 6 HOH C 28 192 192 HOH HOH . 
Q 6 HOH C 29 193 193 HOH HOH . 
Q 6 HOH C 30 194 194 HOH HOH . 
Q 6 HOH C 31 205 205 HOH HOH . 
Q 6 HOH C 32 207 207 HOH HOH . 
R 6 HOH D 1 83 2 HOH HOH . 
R 6 HOH D 2 84 8 HOH HOH . 
R 6 HOH D 3 85 13 HOH HOH . 
R 6 HOH D 4 86 86 HOH HOH . 
R 6 HOH D 5 87 14 HOH HOH . 
R 6 HOH D 6 88 23 HOH HOH . 
R 6 HOH D 7 89 25 HOH HOH . 
R 6 HOH D 8 90 27 HOH HOH . 
R 6 HOH D 9 91 29 HOH HOH . 
R 6 HOH D 10 92 30 HOH HOH . 
R 6 HOH D 11 93 32 HOH HOH . 
R 6 HOH D 12 94 94 HOH HOH . 
R 6 HOH D 13 95 39 HOH HOH . 
R 6 HOH D 14 96 41 HOH HOH . 
R 6 HOH D 15 97 97 HOH HOH . 
R 6 HOH D 16 98 44 HOH HOH . 
R 6 HOH D 17 99 53 HOH HOH . 
R 6 HOH D 18 100 100 HOH HOH . 
R 6 HOH D 19 104 55 HOH HOH . 
R 6 HOH D 20 105 62 HOH HOH . 
R 6 HOH D 21 106 106 HOH HOH . 
R 6 HOH D 22 107 63 HOH HOH . 
R 6 HOH D 23 108 66 HOH HOH . 
R 6 HOH D 24 109 71 HOH HOH . 
R 6 HOH D 25 110 78 HOH HOH . 
R 6 HOH D 26 111 79 HOH HOH . 
R 6 HOH D 27 112 112 HOH HOH . 
R 6 HOH D 28 117 117 HOH HOH . 
R 6 HOH D 29 128 128 HOH HOH . 
R 6 HOH D 30 139 139 HOH HOH . 
R 6 HOH D 31 148 148 HOH HOH . 
R 6 HOH D 32 153 153 HOH HOH . 
R 6 HOH D 33 163 163 HOH HOH . 
R 6 HOH D 34 167 167 HOH HOH . 
R 6 HOH D 35 176 176 HOH HOH . 
R 6 HOH D 36 184 184 HOH HOH . 
R 6 HOH D 37 185 185 HOH HOH . 
R 6 HOH D 38 190 190 HOH HOH . 
R 6 HOH D 39 198 198 HOH HOH . 
R 6 HOH D 40 199 199 HOH HOH . 
R 6 HOH D 41 206 206 HOH HOH . 
R 6 HOH D 42 208 208 HOH HOH . 
S 6 HOH E 1 83 9 HOH HOH . 
S 6 HOH E 2 84 84 HOH HOH . 
S 6 HOH E 3 85 85 HOH HOH . 
S 6 HOH E 4 86 12 HOH HOH . 
S 6 HOH E 5 87 17 HOH HOH . 
S 6 HOH E 6 88 20 HOH HOH . 
S 6 HOH E 7 89 24 HOH HOH . 
S 6 HOH E 8 90 28 HOH HOH . 
S 6 HOH E 9 91 31 HOH HOH . 
S 6 HOH E 10 92 35 HOH HOH . 
S 6 HOH E 11 93 48 HOH HOH . 
S 6 HOH E 12 94 60 HOH HOH . 
S 6 HOH E 13 95 95 HOH HOH . 
S 6 HOH E 14 96 61 HOH HOH . 
S 6 HOH E 15 97 68 HOH HOH . 
S 6 HOH E 16 98 98 HOH HOH . 
S 6 HOH E 17 99 77 HOH HOH . 
S 6 HOH E 18 100 80 HOH HOH . 
S 6 HOH E 19 102 101 HOH HOH . 
S 6 HOH E 20 107 107 HOH HOH . 
S 6 HOH E 21 108 108 HOH HOH . 
S 6 HOH E 22 114 114 HOH HOH . 
S 6 HOH E 23 121 121 HOH HOH . 
S 6 HOH E 24 124 124 HOH HOH . 
S 6 HOH E 25 140 140 HOH HOH . 
S 6 HOH E 26 144 144 HOH HOH . 
S 6 HOH E 27 146 146 HOH HOH . 
S 6 HOH E 28 147 147 HOH HOH . 
S 6 HOH E 29 150 150 HOH HOH . 
S 6 HOH E 30 152 152 HOH HOH . 
S 6 HOH E 31 155 155 HOH HOH . 
S 6 HOH E 32 162 162 HOH HOH . 
S 6 HOH E 33 175 175 HOH HOH . 
S 6 HOH E 34 188 188 HOH HOH . 
S 6 HOH E 35 197 197 HOH HOH . 
S 6 HOH E 36 200 200 HOH HOH . 
S 6 HOH E 37 203 203 HOH HOH . 
S 6 HOH E 38 209 209 HOH HOH . 
T 6 HOH F 1 83 83 HOH HOH . 
T 6 HOH F 2 84 6 HOH HOH . 
T 6 HOH F 3 85 16 HOH HOH . 
T 6 HOH F 4 86 34 HOH HOH . 
T 6 HOH F 5 87 87 HOH HOH . 
T 6 HOH F 6 88 37 HOH HOH . 
T 6 HOH F 7 89 46 HOH HOH . 
T 6 HOH F 8 90 51 HOH HOH . 
T 6 HOH F 9 91 57 HOH HOH . 
T 6 HOH F 10 92 72 HOH HOH . 
T 6 HOH F 11 96 96 HOH HOH . 
T 6 HOH F 12 118 118 HOH HOH . 
T 6 HOH F 13 119 119 HOH HOH . 
T 6 HOH F 14 130 130 HOH HOH . 
T 6 HOH F 15 135 135 HOH HOH . 
T 6 HOH F 16 136 136 HOH HOH . 
T 6 HOH F 17 149 149 HOH HOH . 
T 6 HOH F 18 151 151 HOH HOH . 
T 6 HOH F 19 156 156 HOH HOH . 
T 6 HOH F 20 157 157 HOH HOH . 
T 6 HOH F 21 158 158 HOH HOH . 
T 6 HOH F 22 166 166 HOH HOH . 
T 6 HOH F 23 171 171 HOH HOH . 
T 6 HOH F 24 174 174 HOH HOH . 
T 6 HOH F 25 178 178 HOH HOH . 
T 6 HOH F 26 179 179 HOH HOH . 
T 6 HOH F 27 186 186 HOH HOH . 
T 6 HOH F 28 191 191 HOH HOH . 
T 6 HOH F 29 196 196 HOH HOH . 
T 6 HOH F 30 204 204 HOH HOH . 
T 6 HOH F 31 210 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 2 27.699 12.539 34.53 1 105.2 ? PB ADP 101 B 1 
HETATM 2 O O1B ADP . . . H 2 26.839 11.541 35.273 1 84.16 ? O1B ADP 101 B 1 
HETATM 3 O O2B ADP . . . H 2 27.223 13.927 34.811 1 90.72 ? O2B ADP 101 B 1 
HETATM 4 O O3B ADP . . . H 2 29.137 12.393 34.97 1 96.8 ? O3B ADP 101 B 1 
HETATM 5 P PA ADP . . . H 2 26.301 12.646 32.163 1 82.69 ? PA ADP 101 B 1 
HETATM 6 O O1A ADP . . . H 2 25.072 12.666 33.078 1 80.38 ? O1A ADP 101 B 1 
HETATM 7 O O2A ADP . . . H 2 26.491 13.997 31.538 1 66.64 ? O2A ADP 101 B 1 
HETATM 8 O O3A ADP . . . H 2 27.609 12.262 32.988 1 84.18 ? O3A ADP 101 B 1 
HETATM 9 O O5' ADP . . . H 2 26.118 11.529 31.039 1 66.1 ? O5' ADP 101 B 1 
HETATM 10 C C5' ADP . . . H 2 27.08 10.492 30.962 1 59.9 ? C5' ADP 101 B 1 
HETATM 11 C C4' ADP . . . H 2 27.209 10.005 29.545 1 52.14 ? C4' ADP 101 B 1 
HETATM 12 O O4' ADP . . . H 2 26.336 10.711 28.755 1 47.25 ? O4' ADP 101 B 1 
HETATM 13 C C3' ADP . . . H 2 28.584 10.26 29.031 1 52.65 ? C3' ADP 101 B 1 
HETATM 14 O O3' ADP . . . H 2 29.215 9.088 28.77 1 50.71 ? O3' ADP 101 B 1 
HETATM 15 C C2' ADP . . . H 2 28.439 11.018 27.775 1 44.47 ? C2' ADP 101 B 1 
HETATM 16 O O2' ADP . . . H 2 28.984 10.294 26.752 1 46.96 ? O2' ADP 101 B 1 
HETATM 17 C C1' ADP . . . H 2 26.993 11.092 27.626 1 37.41 ? C1' ADP 101 B 1 
HETATM 18 N N9 ADP . . . H 2 26.58 12.509 27.35 1 37.5 ? N9 ADP 101 B 1 
HETATM 19 C C8 ADP . . . H 2 26.171 13.443 28.27 1 33.88 ? C8 ADP 101 B 1 
HETATM 20 N N7 ADP . . . H 2 25.874 14.59 27.586 1 34.56 ? N7 ADP 101 B 1 
HETATM 21 C C5 ADP . . . H 2 26.091 14.347 26.253 1 30.74 ? C5 ADP 101 B 1 
HETATM 22 C C6 ADP . . . H 2 25.957 15.139 25.121 1 29.19 ? C6 ADP 101 B 1 
HETATM 23 N N6 ADP . . . H 2 25.515 16.503 25.261 1 27.16 ? N6 ADP 101 B 1 
HETATM 24 N N1 ADP . . . H 2 26.251 14.617 23.883 1 26.57 ? N1 ADP 101 B 1 
HETATM 25 C C2 ADP . . . H 2 26.689 13.323 23.753 1 23.15 ? C2 ADP 101 B 1 
HETATM 26 N N3 ADP . . . H 2 26.821 12.544 24.873 1 28.28 ? N3 ADP 101 B 1 
HETATM 27 C C4 ADP . . . H 2 26.523 13.066 26.109 1 26.24 ? C4 ADP 101 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#