data_3QUI # _model_server_result.job_id GFf3gE3HIfD1krcn9rcktg _model_server_result.datetime_utc '2024-12-21 12:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":101}' # _entry.id 3QUI # _exptl.entry_id 3QUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QUI _cell.length_a 61.083 _cell.length_b 75.862 _cell.length_c 93.437 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 73 n n PG O2G ANP sing 74 n n PG O3G ANP sing 75 n n PG N3B ANP sing 76 n n O2G HOG2 ANP sing 77 n n O3G HOG3 ANP sing 78 n n PB O1B ANP doub 79 n n PB O2B ANP sing 80 n n PB N3B ANP sing 81 n n PB O3A ANP sing 82 n n O2B HOB2 ANP sing 83 n n N3B HNB1 ANP sing 84 n n PA O1A ANP doub 85 n n PA O2A ANP sing 86 n n PA O3A ANP sing 87 n n PA O5' ANP sing 88 n n O2A HOA2 ANP sing 89 n n O5' C5' ANP sing 90 n n C5' C4' ANP sing 91 n n C5' "H5'1" ANP sing 92 n n C5' "H5'2" ANP sing 93 n n C4' O4' ANP sing 94 n n C4' C3' ANP sing 95 n n C4' H4' ANP sing 96 n n O4' C1' ANP sing 97 n n C3' O3' ANP sing 98 n n C3' C2' ANP sing 99 n n C3' H3' ANP sing 100 n n O3' HO3' ANP sing 101 n n C2' O2' ANP sing 102 n n C2' C1' ANP sing 103 n n C2' H2' ANP sing 104 n n O2' HO2' ANP sing 105 n n C1' N9 ANP sing 106 n n C1' H1' ANP sing 107 n n N9 C8 ANP sing 108 n y N9 C4 ANP sing 109 n y C8 N7 ANP doub 110 n y C8 H8 ANP sing 111 n n N7 C5 ANP sing 112 n y C5 C6 ANP sing 113 n y C5 C4 ANP doub 114 n y C6 N6 ANP sing 115 n n C6 N1 ANP doub 116 n y N6 HN61 ANP sing 117 n n N6 HN62 ANP sing 118 n n N1 C2 ANP sing 119 n y C2 N3 ANP doub 120 n y C2 H2 ANP sing 121 n n N3 C4 ANP sing 122 n y # _atom_sites.entry_id 3QUI _atom_sites.fract_transf_matrix[1][1] 0.016371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 101 101 ADP ADP . H 2 ADP B 1 101 101 ADP ADP . I 2 ADP C 1 101 101 ADP ADP . J 3 ANP D 1 101 101 ANP ANP . K 3 ANP D 1 102 102 ANP ANP . L 4 PEG D 1 103 103 PEG PEG . M 3 ANP E 1 101 101 ANP ANP . N 5 ADE F 1 101 101 ADE AD . O 6 HOH A 1 83 4 HOH HOH . O 6 HOH A 2 84 5 HOH HOH . O 6 HOH A 3 85 11 HOH HOH . O 6 HOH A 4 86 15 HOH HOH . O 6 HOH A 5 87 18 HOH HOH . O 6 HOH A 6 88 19 HOH HOH . O 6 HOH A 7 89 89 HOH HOH . O 6 HOH A 8 90 90 HOH HOH . O 6 HOH A 9 91 22 HOH HOH . O 6 HOH A 10 92 40 HOH HOH . O 6 HOH A 11 93 93 HOH HOH . O 6 HOH A 12 94 42 HOH HOH . O 6 HOH A 13 95 43 HOH HOH . O 6 HOH A 14 96 45 HOH HOH . O 6 HOH A 15 97 52 HOH HOH . O 6 HOH A 16 98 54 HOH HOH . O 6 HOH A 17 99 99 HOH HOH . O 6 HOH A 18 100 56 HOH HOH . O 6 HOH A 19 102 59 HOH HOH . O 6 HOH A 20 103 64 HOH HOH . O 6 HOH A 21 104 67 HOH HOH . O 6 HOH A 22 105 69 HOH HOH . O 6 HOH A 23 116 116 HOH HOH . O 6 HOH A 24 122 122 HOH HOH . O 6 HOH A 25 125 125 HOH HOH . O 6 HOH A 26 126 126 HOH HOH . O 6 HOH A 27 137 137 HOH HOH . O 6 HOH A 28 138 138 HOH HOH . O 6 HOH A 29 143 143 HOH HOH . O 6 HOH A 30 159 159 HOH HOH . O 6 HOH A 31 161 161 HOH HOH . O 6 HOH A 32 169 169 HOH HOH . O 6 HOH A 33 172 172 HOH HOH . O 6 HOH A 34 180 180 HOH HOH . O 6 HOH A 35 181 181 HOH HOH . O 6 HOH A 36 187 187 HOH HOH . O 6 HOH A 37 211 211 HOH HOH . P 6 HOH B 1 83 1 HOH HOH . P 6 HOH B 2 84 3 HOH HOH . P 6 HOH B 3 85 7 HOH HOH . P 6 HOH B 4 86 21 HOH HOH . P 6 HOH B 5 87 26 HOH HOH . P 6 HOH B 6 88 88 HOH HOH . P 6 HOH B 7 89 38 HOH HOH . P 6 HOH B 8 90 82 HOH HOH . P 6 HOH B 9 91 91 HOH HOH . P 6 HOH B 10 92 92 HOH HOH . P 6 HOH B 11 102 102 HOH HOH . P 6 HOH B 12 113 113 HOH HOH . P 6 HOH B 13 115 115 HOH HOH . P 6 HOH B 14 120 120 HOH HOH . P 6 HOH B 15 127 127 HOH HOH . P 6 HOH B 16 131 131 HOH HOH . P 6 HOH B 17 133 133 HOH HOH . P 6 HOH B 18 142 142 HOH HOH . P 6 HOH B 19 145 145 HOH HOH . P 6 HOH B 20 164 164 HOH HOH . P 6 HOH B 21 165 165 HOH HOH . P 6 HOH B 22 168 168 HOH HOH . P 6 HOH B 23 170 170 HOH HOH . P 6 HOH B 24 173 173 HOH HOH . P 6 HOH B 25 182 182 HOH HOH . P 6 HOH B 26 183 183 HOH HOH . P 6 HOH B 27 189 189 HOH HOH . P 6 HOH B 28 195 195 HOH HOH . P 6 HOH B 29 201 201 HOH HOH . P 6 HOH B 30 202 202 HOH HOH . Q 6 HOH C 1 83 10 HOH HOH . Q 6 HOH C 2 84 33 HOH HOH . Q 6 HOH C 3 85 36 HOH HOH . Q 6 HOH C 4 86 47 HOH HOH . Q 6 HOH C 5 87 49 HOH HOH . Q 6 HOH C 6 88 50 HOH HOH . Q 6 HOH C 7 89 58 HOH HOH . Q 6 HOH C 8 90 65 HOH HOH . Q 6 HOH C 9 91 70 HOH HOH . Q 6 HOH C 10 92 73 HOH HOH . Q 6 HOH C 11 93 74 HOH HOH . Q 6 HOH C 12 94 75 HOH HOH . Q 6 HOH C 13 95 76 HOH HOH . Q 6 HOH C 14 96 81 HOH HOH . Q 6 HOH C 15 103 103 HOH HOH . Q 6 HOH C 16 104 104 HOH HOH . Q 6 HOH C 17 105 105 HOH HOH . Q 6 HOH C 18 109 109 HOH HOH . Q 6 HOH C 19 110 110 HOH HOH . Q 6 HOH C 20 111 111 HOH HOH . Q 6 HOH C 21 123 123 HOH HOH . Q 6 HOH C 22 129 129 HOH HOH . Q 6 HOH C 23 134 134 HOH HOH . Q 6 HOH C 24 141 141 HOH HOH . Q 6 HOH C 25 154 154 HOH HOH . Q 6 HOH C 26 160 160 HOH HOH . Q 6 HOH C 27 177 177 HOH HOH . Q 6 HOH C 28 192 192 HOH HOH . Q 6 HOH C 29 193 193 HOH HOH . Q 6 HOH C 30 194 194 HOH HOH . Q 6 HOH C 31 205 205 HOH HOH . Q 6 HOH C 32 207 207 HOH HOH . R 6 HOH D 1 83 2 HOH HOH . R 6 HOH D 2 84 8 HOH HOH . R 6 HOH D 3 85 13 HOH HOH . R 6 HOH D 4 86 86 HOH HOH . R 6 HOH D 5 87 14 HOH HOH . R 6 HOH D 6 88 23 HOH HOH . R 6 HOH D 7 89 25 HOH HOH . R 6 HOH D 8 90 27 HOH HOH . R 6 HOH D 9 91 29 HOH HOH . R 6 HOH D 10 92 30 HOH HOH . R 6 HOH D 11 93 32 HOH HOH . R 6 HOH D 12 94 94 HOH HOH . R 6 HOH D 13 95 39 HOH HOH . R 6 HOH D 14 96 41 HOH HOH . R 6 HOH D 15 97 97 HOH HOH . R 6 HOH D 16 98 44 HOH HOH . R 6 HOH D 17 99 53 HOH HOH . R 6 HOH D 18 100 100 HOH HOH . R 6 HOH D 19 104 55 HOH HOH . R 6 HOH D 20 105 62 HOH HOH . R 6 HOH D 21 106 106 HOH HOH . R 6 HOH D 22 107 63 HOH HOH . R 6 HOH D 23 108 66 HOH HOH . R 6 HOH D 24 109 71 HOH HOH . R 6 HOH D 25 110 78 HOH HOH . R 6 HOH D 26 111 79 HOH HOH . R 6 HOH D 27 112 112 HOH HOH . R 6 HOH D 28 117 117 HOH HOH . R 6 HOH D 29 128 128 HOH HOH . R 6 HOH D 30 139 139 HOH HOH . R 6 HOH D 31 148 148 HOH HOH . R 6 HOH D 32 153 153 HOH HOH . R 6 HOH D 33 163 163 HOH HOH . R 6 HOH D 34 167 167 HOH HOH . R 6 HOH D 35 176 176 HOH HOH . R 6 HOH D 36 184 184 HOH HOH . R 6 HOH D 37 185 185 HOH HOH . R 6 HOH D 38 190 190 HOH HOH . R 6 HOH D 39 198 198 HOH HOH . R 6 HOH D 40 199 199 HOH HOH . R 6 HOH D 41 206 206 HOH HOH . R 6 HOH D 42 208 208 HOH HOH . S 6 HOH E 1 83 9 HOH HOH . S 6 HOH E 2 84 84 HOH HOH . S 6 HOH E 3 85 85 HOH HOH . S 6 HOH E 4 86 12 HOH HOH . S 6 HOH E 5 87 17 HOH HOH . S 6 HOH E 6 88 20 HOH HOH . S 6 HOH E 7 89 24 HOH HOH . S 6 HOH E 8 90 28 HOH HOH . S 6 HOH E 9 91 31 HOH HOH . S 6 HOH E 10 92 35 HOH HOH . S 6 HOH E 11 93 48 HOH HOH . S 6 HOH E 12 94 60 HOH HOH . S 6 HOH E 13 95 95 HOH HOH . S 6 HOH E 14 96 61 HOH HOH . S 6 HOH E 15 97 68 HOH HOH . S 6 HOH E 16 98 98 HOH HOH . S 6 HOH E 17 99 77 HOH HOH . S 6 HOH E 18 100 80 HOH HOH . S 6 HOH E 19 102 101 HOH HOH . S 6 HOH E 20 107 107 HOH HOH . S 6 HOH E 21 108 108 HOH HOH . S 6 HOH E 22 114 114 HOH HOH . S 6 HOH E 23 121 121 HOH HOH . S 6 HOH E 24 124 124 HOH HOH . S 6 HOH E 25 140 140 HOH HOH . S 6 HOH E 26 144 144 HOH HOH . S 6 HOH E 27 146 146 HOH HOH . S 6 HOH E 28 147 147 HOH HOH . S 6 HOH E 29 150 150 HOH HOH . S 6 HOH E 30 152 152 HOH HOH . S 6 HOH E 31 155 155 HOH HOH . S 6 HOH E 32 162 162 HOH HOH . S 6 HOH E 33 175 175 HOH HOH . S 6 HOH E 34 188 188 HOH HOH . S 6 HOH E 35 197 197 HOH HOH . S 6 HOH E 36 200 200 HOH HOH . S 6 HOH E 37 203 203 HOH HOH . S 6 HOH E 38 209 209 HOH HOH . T 6 HOH F 1 83 83 HOH HOH . T 6 HOH F 2 84 6 HOH HOH . T 6 HOH F 3 85 16 HOH HOH . T 6 HOH F 4 86 34 HOH HOH . T 6 HOH F 5 87 87 HOH HOH . T 6 HOH F 6 88 37 HOH HOH . T 6 HOH F 7 89 46 HOH HOH . T 6 HOH F 8 90 51 HOH HOH . T 6 HOH F 9 91 57 HOH HOH . T 6 HOH F 10 92 72 HOH HOH . T 6 HOH F 11 96 96 HOH HOH . T 6 HOH F 12 118 118 HOH HOH . T 6 HOH F 13 119 119 HOH HOH . T 6 HOH F 14 130 130 HOH HOH . T 6 HOH F 15 135 135 HOH HOH . T 6 HOH F 16 136 136 HOH HOH . T 6 HOH F 17 149 149 HOH HOH . T 6 HOH F 18 151 151 HOH HOH . T 6 HOH F 19 156 156 HOH HOH . T 6 HOH F 20 157 157 HOH HOH . T 6 HOH F 21 158 158 HOH HOH . T 6 HOH F 22 166 166 HOH HOH . T 6 HOH F 23 171 171 HOH HOH . T 6 HOH F 24 174 174 HOH HOH . T 6 HOH F 25 178 178 HOH HOH . T 6 HOH F 26 179 179 HOH HOH . T 6 HOH F 27 186 186 HOH HOH . T 6 HOH F 28 191 191 HOH HOH . T 6 HOH F 29 196 196 HOH HOH . T 6 HOH F 30 204 204 HOH HOH . T 6 HOH F 31 210 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . M 3 32.53 -18.906 14.115 1 72.56 ? PG ANP 101 E 1 HETATM 2 O O1G ANP . . . M 3 31.294 -18.022 14.105 1 45.32 ? O1G ANP 101 E 1 HETATM 3 O O2G ANP . . . M 3 32.257 -20.153 13.19 1 59.48 ? O2G ANP 101 E 1 HETATM 4 O O3G ANP . . . M 3 32.776 -19.4 15.583 1 62.17 ? O3G ANP 101 E 1 HETATM 5 P PB ANP . . . M 3 35.409 -18.666 13.899 1 67.89 ? PB ANP 101 E 1 HETATM 6 O O1B ANP . . . M 3 35.537 -19.934 13.111 1 64.96 ? O1B ANP 101 E 1 HETATM 7 O O2B ANP . . . M 3 36.533 -17.678 13.426 1 49.98 ? O2B ANP 101 E 1 HETATM 8 N N3B ANP . . . M 3 33.878 -18.01 13.603 1 55.22 ? N3B ANP 101 E 1 HETATM 9 P PA ANP . . . M 3 36.356 -18.011 16.479 1 54.86 ? PA ANP 101 E 1 HETATM 10 O O1A ANP . . . M 3 36.207 -18.612 17.874 1 56.28 ? O1A ANP 101 E 1 HETATM 11 O O2A ANP . . . M 3 37.838 -17.878 16.155 1 49.67 ? O2A ANP 101 E 1 HETATM 12 O O3A ANP . . . M 3 35.616 -18.988 15.44 1 59.16 ? O3A ANP 101 E 1 HETATM 13 O O5' ANP . . . M 3 35.67 -16.578 16.476 1 46.9 ? O5' ANP 101 E 1 HETATM 14 C C5' ANP . . . M 3 35.495 -15.858 17.662 1 37.89 ? C5' ANP 101 E 1 HETATM 15 C C4' ANP . . . M 3 34.291 -14.991 17.532 1 35.45 ? C4' ANP 101 E 1 HETATM 16 O O4' ANP . . . M 3 34.591 -13.874 16.782 1 34.26 ? O4' ANP 101 E 1 HETATM 17 C C3' ANP . . . M 3 33.245 -15.696 16.759 1 39.03 ? C3' ANP 101 E 1 HETATM 18 O O3' ANP . . . M 3 32.461 -16.454 17.589 1 34.16 ? O3' ANP 101 E 1 HETATM 19 C C2' ANP . . . M 3 32.5 -14.607 16.107 1 41.09 ? C2' ANP 101 E 1 HETATM 20 O O2' ANP . . . M 3 31.569 -14.058 16.951 1 35.57 ? O2' ANP 101 E 1 HETATM 21 C C1' ANP . . . M 3 33.587 -13.671 15.863 1 31.69 ? C1' ANP 101 E 1 HETATM 22 N N9 ANP . . . M 3 34.105 -13.925 14.483 1 33.95 ? N9 ANP 101 E 1 HETATM 23 C C8 ANP . . . M 3 34.734 -15.04 14.054 1 36.47 ? C8 ANP 101 E 1 HETATM 24 N N7 ANP . . . M 3 35.02 -14.88 12.737 1 38.24 ? N7 ANP 101 E 1 HETATM 25 C C5 ANP . . . M 3 34.575 -13.677 12.357 1 27.39 ? C5 ANP 101 E 1 HETATM 26 C C6 ANP . . . M 3 34.605 -13.019 11.137 1 24.37 ? C6 ANP 101 E 1 HETATM 27 N N6 ANP . . . M 3 35.208 -13.655 9.993 1 22.57 ? N6 ANP 101 E 1 HETATM 28 N N1 ANP . . . M 3 34.046 -11.787 11.013 1 25.2 ? N1 ANP 101 E 1 HETATM 29 C C2 ANP . . . M 3 33.48 -11.185 12.11 1 26.38 ? C2 ANP 101 E 1 HETATM 30 N N3 ANP . . . M 3 33.457 -11.835 13.323 1 29.95 ? N3 ANP 101 E 1 HETATM 31 C C4 ANP . . . M 3 34.003 -13.086 13.439 1 29.78 ? C4 ANP 101 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #