data_3QUP # _model_server_result.job_id YrfWDTXQect9rSgk9TPKaQ _model_server_result.datetime_utc '2025-04-13 09:10:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3QUP # _exptl.entry_id 3QUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.506 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(5-fluoro-1H-indol-2-yl)[(3R)-1'-[(3R)-piperidin-3-yl]spiro[indole-3,3'-pyrrolidin]-1(2H)-yl]methanone" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.3 _cell.angle_gamma 90 _cell.entry_id 3QUP _cell.length_a 46.986 _cell.length_b 57.343 _cell.length_c 60.562 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H27 F N4 O' _chem_comp.formula_weight 418.506 _chem_comp.id LUN _chem_comp.mon_nstd_flag . _chem_comp.name "(5-fluoro-1H-indol-2-yl)[(3R)-1'-[(3R)-piperidin-3-yl]spiro[indole-3,3'-pyrrolidin]-1(2H)-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C1 LUN sing 194 n n C1 C3 LUN sing 195 n n C1 C2 LUN sing 196 n n C1 C5 LUN sing 197 n n C7 C2 LUN doub 198 n y C2 C6 LUN sing 199 n y C3 N8 LUN sing 200 n n C3 H3 LUN sing 201 n n C3 H3A LUN sing 202 n n C4 N9 LUN sing 203 n n C4 H4 LUN sing 204 n n C4 H4A LUN sing 205 n n C10 C5 LUN sing 206 n n C5 H5 LUN sing 207 n n C5 H5A LUN sing 208 n n C6 N8 LUN sing 209 n n C6 C11 LUN doub 210 n y C7 C12 LUN sing 211 n y C7 H7 LUN sing 212 n n C13 N8 LUN sing 213 n n C14 N9 LUN sing 214 n n N9 C10 LUN sing 215 n n C10 H10 LUN sing 216 n n C10 H10A LUN sing 217 n n C15 C11 LUN sing 218 n y C11 H11 LUN sing 219 n n C12 C15 LUN doub 220 n y C12 H12 LUN sing 221 n n C16 C13 LUN sing 222 n n C13 O17 LUN doub 223 n n C19 C14 LUN sing 224 n n C14 C18 LUN sing 225 n n C14 H14 LUN sing 226 n n C15 H15 LUN sing 227 n n N21 C16 LUN sing 228 n y C20 C16 LUN doub 229 n y C22 C18 LUN sing 230 n n C18 H18 LUN sing 231 n n C18 H18A LUN sing 232 n n N23 C19 LUN sing 233 n n C19 H19 LUN sing 234 n n C19 H19A LUN sing 235 n n C24 C20 LUN sing 236 n y C20 H20 LUN sing 237 n n C25 N21 LUN sing 238 n y C26 C22 LUN sing 239 n n C22 H22 LUN sing 240 n n C22 H22A LUN sing 241 n n N23 C26 LUN sing 242 n n N23 HN23 LUN sing 243 n n C25 C24 LUN doub 244 n y C27 C24 LUN sing 245 n y C28 C25 LUN sing 246 n y C26 H26 LUN sing 247 n n C26 H26A LUN sing 248 n n C29 C27 LUN doub 249 n y C27 H27 LUN sing 250 n n C30 C28 LUN doub 251 n y C28 H28 LUN sing 252 n n C30 C29 LUN sing 253 n y F31 C29 LUN sing 254 n n C30 H30 LUN sing 255 n n N21 HN21 LUN sing 256 n n # _atom_sites.entry_id 3QUP _atom_sites.fract_transf_matrix[1][1] 0.021283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003867 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LUN A 1 1 1 LUN LUN . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 49 49 HOH HOH . C 3 HOH A 49 50 50 HOH HOH . C 3 HOH A 50 51 51 HOH HOH . C 3 HOH A 51 52 52 HOH HOH . C 3 HOH A 52 53 53 HOH HOH . C 3 HOH A 53 54 54 HOH HOH . C 3 HOH A 54 55 55 HOH HOH . C 3 HOH A 55 56 56 HOH HOH . C 3 HOH A 56 57 57 HOH HOH . C 3 HOH A 57 58 58 HOH HOH . C 3 HOH A 58 59 59 HOH HOH . C 3 HOH A 59 60 60 HOH HOH . C 3 HOH A 60 61 61 HOH HOH . C 3 HOH A 61 62 62 HOH HOH . C 3 HOH A 62 63 63 HOH HOH . C 3 HOH A 63 64 64 HOH HOH . C 3 HOH A 64 65 65 HOH HOH . C 3 HOH A 65 66 66 HOH HOH . C 3 HOH A 66 67 67 HOH HOH . C 3 HOH A 67 68 68 HOH HOH . C 3 HOH A 68 69 69 HOH HOH . C 3 HOH A 69 70 70 HOH HOH . C 3 HOH A 70 71 71 HOH HOH . C 3 HOH A 71 72 72 HOH HOH . C 3 HOH A 72 73 73 HOH HOH . C 3 HOH A 73 74 74 HOH HOH . C 3 HOH A 74 75 75 HOH HOH . C 3 HOH A 75 76 76 HOH HOH . C 3 HOH A 76 807 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LUN . . . B 2 10.411 -7.633 14.651 1 29.8 ? C1 LUN 1 A 1 HETATM 2 C C2 LUN . . . B 2 9.06 -7.027 14.881 1 30.96 ? C2 LUN 1 A 1 HETATM 3 C C3 LUN . . . B 2 10.114 -9.122 14.786 1 32.58 ? C3 LUN 1 A 1 HETATM 4 C C4 LUN . . . B 2 11.031 -7.366 13.294 1 31.87 ? C4 LUN 1 A 1 HETATM 5 C C5 LUN . . . B 2 11.401 -7.181 15.674 1 31.75 ? C5 LUN 1 A 1 HETATM 6 C C6 LUN . . . B 2 8.14 -7.994 15.202 1 30.53 ? C6 LUN 1 A 1 HETATM 7 C C7 LUN . . . B 2 8.674 -5.704 14.803 1 30.14 ? C7 LUN 1 A 1 HETATM 8 N N8 LUN . . . B 2 8.73 -9.263 15.212 1 31.5 ? N8 LUN 1 A 1 HETATM 9 N N9 LUN . . . B 2 12.45 -6.977 13.548 1 31.22 ? N9 LUN 1 A 1 HETATM 10 C C10 LUN . . . B 2 12.751 -7.127 14.992 1 30.6 ? C10 LUN 1 A 1 HETATM 11 C C11 LUN . . . B 2 6.825 -7.685 15.446 1 28.6 ? C11 LUN 1 A 1 HETATM 12 C C12 LUN . . . B 2 7.354 -5.373 15.049 1 30.15 ? C12 LUN 1 A 1 HETATM 13 C C13 LUN . . . B 2 7.951 -10.429 15.124 1 34.72 ? C13 LUN 1 A 1 HETATM 14 C C14 LUN . . . B 2 13.464 -7.61 12.655 1 29.69 ? C14 LUN 1 A 1 HETATM 15 C C15 LUN . . . B 2 6.434 -6.365 15.365 1 29.76 ? C15 LUN 1 A 1 HETATM 16 C C16 LUN . . . B 2 8.543 -11.645 14.662 1 35.15 ? C16 LUN 1 A 1 HETATM 17 O O17 LUN . . . B 2 6.756 -10.427 15.413 1 34.66 ? O17 LUN 1 A 1 HETATM 18 C C18 LUN . . . B 2 14.846 -7.042 12.964 1 30.63 ? C18 LUN 1 A 1 HETATM 19 C C19 LUN . . . B 2 13.127 -7.205 11.24 1 30 ? C19 LUN 1 A 1 HETATM 20 C C20 LUN . . . B 2 9.832 -12.149 14.64 1 37.52 ? C20 LUN 1 A 1 HETATM 21 N N21 LUN . . . B 2 7.768 -12.611 14.091 1 37.7 ? N21 LUN 1 A 1 HETATM 22 C C22 LUN . . . B 2 15.863 -7.551 11.946 1 33.55 ? C22 LUN 1 A 1 HETATM 23 N N23 LUN . . . B 2 14.082 -7.79 10.298 1 32.84 ? N23 LUN 1 A 1 HETATM 24 C C24 LUN . . . B 2 9.809 -13.437 14.036 1 39.74 ? C24 LUN 1 A 1 HETATM 25 C C25 LUN . . . B 2 8.495 -13.698 13.699 1 39.34 ? C25 LUN 1 A 1 HETATM 26 C C26 LUN . . . B 2 15.413 -7.216 10.533 1 32.74 ? C26 LUN 1 A 1 HETATM 27 C C27 LUN . . . B 2 10.779 -14.392 13.752 1 41.99 ? C27 LUN 1 A 1 HETATM 28 C C28 LUN . . . B 2 8.061 -14.854 13.085 1 41.21 ? C28 LUN 1 A 1 HETATM 29 C C29 LUN . . . B 2 10.36 -15.562 13.145 1 43.61 ? C29 LUN 1 A 1 HETATM 30 C C30 LUN . . . B 2 9.042 -15.782 12.819 1 42.54 ? C30 LUN 1 A 1 HETATM 31 F F31 LUN . . . B 2 11.27 -16.529 12.846 1 45.05 ? F31 LUN 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #