data_3QUT # _model_server_result.job_id eoknhcEmV90YFiIllZngQw _model_server_result.datetime_utc '2025-08-18 21:34:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":227}' # _entry.id 3QUT # _exptl.entry_id 3QUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QUT _cell.length_a 45.475 _cell.length_b 65.405 _cell.length_c 76.168 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 30 A ASP 11 1_555 B MG MG . A MG 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc2 A O ASN 32 A ASN 13 1_555 B MG MG . A MG 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A OE2 GLU 66 A GLU 47 1_555 B MG MG . A MG 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc4 A OD1 ASN 191 A ASN 172 1_555 B MG MG . A MG 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 A O ASN 210 A ASN 191 1_555 C MG MG . A MG 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A O PRO 229 A PRO 210 1_555 C MG MG . A MG 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 B MG MG . A MG 225 1_555 D O3 MLT . A MLT 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 B MG MG . A MG 225 1_555 F O HOH . A HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc9 C MG MG . A MG 226 1_555 F O HOH . A HOH 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc10 C MG MG . A MG 226 1_555 F O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 237 n n C1 O2 MLT sing 238 n n C1 C2 MLT sing 239 n n C2 O3 MLT sing 240 n n C2 C3 MLT sing 241 n n C2 H2 MLT sing 242 n n O3 HO3 MLT sing 243 n n C3 C4 MLT sing 244 n n C3 H31 MLT sing 245 n n C3 H32 MLT sing 246 n n C4 O4 MLT doub 247 n n C4 O5 MLT sing 248 n n O5 HO5 MLT sing 249 n n O2 H6 MLT sing 250 n n # _atom_sites.entry_id 3QUT _atom_sites.fract_transf_matrix[1][1] 0.02199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 225 1 MG MG . C 2 MG A 1 226 1 MG MG . D 3 MLT A 1 227 1 MLT MLT . E 4 CL A 1 228 1 CL CL . F 5 HOH A 1 229 229 HOH HOH . F 5 HOH A 2 230 230 HOH HOH . F 5 HOH A 3 231 231 HOH HOH . F 5 HOH A 4 232 1 HOH HOH . F 5 HOH A 5 233 2 HOH HOH . F 5 HOH A 6 234 234 HOH HOH . F 5 HOH A 7 235 235 HOH HOH . F 5 HOH A 8 236 236 HOH HOH . F 5 HOH A 9 237 3 HOH HOH . F 5 HOH A 10 238 238 HOH HOH . F 5 HOH A 11 239 239 HOH HOH . F 5 HOH A 12 240 240 HOH HOH . F 5 HOH A 13 241 241 HOH HOH . F 5 HOH A 14 242 242 HOH HOH . F 5 HOH A 15 243 243 HOH HOH . F 5 HOH A 16 244 244 HOH HOH . F 5 HOH A 17 245 5 HOH HOH . F 5 HOH A 18 246 6 HOH HOH . F 5 HOH A 19 247 247 HOH HOH . F 5 HOH A 20 248 7 HOH HOH . F 5 HOH A 21 249 249 HOH HOH . F 5 HOH A 22 250 250 HOH HOH . F 5 HOH A 23 251 251 HOH HOH . F 5 HOH A 24 252 252 HOH HOH . F 5 HOH A 25 253 253 HOH HOH . F 5 HOH A 26 254 8 HOH HOH . F 5 HOH A 27 255 9 HOH HOH . F 5 HOH A 28 256 256 HOH HOH . F 5 HOH A 29 257 257 HOH HOH . F 5 HOH A 30 258 258 HOH HOH . F 5 HOH A 31 259 259 HOH HOH . F 5 HOH A 32 260 260 HOH HOH . F 5 HOH A 33 261 261 HOH HOH . F 5 HOH A 34 262 262 HOH HOH . F 5 HOH A 35 263 263 HOH HOH . F 5 HOH A 36 264 264 HOH HOH . F 5 HOH A 37 265 265 HOH HOH . F 5 HOH A 38 266 10 HOH HOH . F 5 HOH A 39 267 267 HOH HOH . F 5 HOH A 40 268 268 HOH HOH . F 5 HOH A 41 269 11 HOH HOH . F 5 HOH A 42 270 270 HOH HOH . F 5 HOH A 43 271 12 HOH HOH . F 5 HOH A 44 272 272 HOH HOH . F 5 HOH A 45 273 13 HOH HOH . F 5 HOH A 46 274 274 HOH HOH . F 5 HOH A 47 275 275 HOH HOH . F 5 HOH A 48 276 14 HOH HOH . F 5 HOH A 49 277 277 HOH HOH . F 5 HOH A 50 278 278 HOH HOH . F 5 HOH A 51 279 279 HOH HOH . F 5 HOH A 52 280 15 HOH HOH . F 5 HOH A 53 281 16 HOH HOH . F 5 HOH A 54 282 282 HOH HOH . F 5 HOH A 55 283 283 HOH HOH . F 5 HOH A 56 284 284 HOH HOH . F 5 HOH A 57 285 285 HOH HOH . F 5 HOH A 58 286 286 HOH HOH . F 5 HOH A 59 287 287 HOH HOH . F 5 HOH A 60 288 288 HOH HOH . F 5 HOH A 61 289 289 HOH HOH . F 5 HOH A 62 290 290 HOH HOH . F 5 HOH A 63 291 291 HOH HOH . F 5 HOH A 64 292 292 HOH HOH . F 5 HOH A 65 293 293 HOH HOH . F 5 HOH A 66 294 294 HOH HOH . F 5 HOH A 67 295 295 HOH HOH . F 5 HOH A 68 296 296 HOH HOH . F 5 HOH A 69 297 297 HOH HOH . F 5 HOH A 70 298 298 HOH HOH . F 5 HOH A 71 299 299 HOH HOH . F 5 HOH A 72 300 300 HOH HOH . F 5 HOH A 73 301 301 HOH HOH . F 5 HOH A 74 302 302 HOH HOH . F 5 HOH A 75 303 303 HOH HOH . F 5 HOH A 76 304 304 HOH HOH . F 5 HOH A 77 305 305 HOH HOH . F 5 HOH A 78 306 306 HOH HOH . F 5 HOH A 79 307 307 HOH HOH . F 5 HOH A 80 308 308 HOH HOH . F 5 HOH A 81 309 309 HOH HOH . F 5 HOH A 82 310 310 HOH HOH . F 5 HOH A 83 311 17 HOH HOH . F 5 HOH A 84 312 18 HOH HOH . F 5 HOH A 85 313 20 HOH HOH . F 5 HOH A 86 314 21 HOH HOH . F 5 HOH A 87 315 22 HOH HOH . F 5 HOH A 88 316 24 HOH HOH . F 5 HOH A 89 317 25 HOH HOH . F 5 HOH A 90 318 26 HOH HOH . F 5 HOH A 91 319 27 HOH HOH . F 5 HOH A 92 320 28 HOH HOH . F 5 HOH A 93 321 29 HOH HOH . F 5 HOH A 94 322 30 HOH HOH . F 5 HOH A 95 323 32 HOH HOH . F 5 HOH A 96 324 33 HOH HOH . F 5 HOH A 97 325 34 HOH HOH . F 5 HOH A 98 326 35 HOH HOH . F 5 HOH A 99 327 37 HOH HOH . F 5 HOH A 100 328 38 HOH HOH . F 5 HOH A 101 329 39 HOH HOH . F 5 HOH A 102 330 40 HOH HOH . F 5 HOH A 103 331 41 HOH HOH . F 5 HOH A 104 332 42 HOH HOH . F 5 HOH A 105 333 43 HOH HOH . F 5 HOH A 106 334 44 HOH HOH . F 5 HOH A 107 335 45 HOH HOH . F 5 HOH A 108 336 46 HOH HOH . F 5 HOH A 109 337 47 HOH HOH . F 5 HOH A 110 338 48 HOH HOH . F 5 HOH A 111 339 49 HOH HOH . F 5 HOH A 112 340 50 HOH HOH . F 5 HOH A 113 341 51 HOH HOH . F 5 HOH A 114 342 54 HOH HOH . F 5 HOH A 115 343 55 HOH HOH . F 5 HOH A 116 344 57 HOH HOH . F 5 HOH A 117 345 58 HOH HOH . F 5 HOH A 118 346 62 HOH HOH . F 5 HOH A 119 347 63 HOH HOH . F 5 HOH A 120 348 64 HOH HOH . F 5 HOH A 121 349 65 HOH HOH . F 5 HOH A 122 350 66 HOH HOH . F 5 HOH A 123 351 67 HOH HOH . F 5 HOH A 124 352 68 HOH HOH . F 5 HOH A 125 353 71 HOH HOH . F 5 HOH A 126 354 72 HOH HOH . F 5 HOH A 127 355 73 HOH HOH . F 5 HOH A 128 356 74 HOH HOH . F 5 HOH A 129 357 75 HOH HOH . F 5 HOH A 130 358 76 HOH HOH . F 5 HOH A 131 359 80 HOH HOH . F 5 HOH A 132 360 81 HOH HOH . F 5 HOH A 133 361 82 HOH HOH . F 5 HOH A 134 362 83 HOH HOH . F 5 HOH A 135 363 84 HOH HOH . F 5 HOH A 136 364 85 HOH HOH . F 5 HOH A 137 365 86 HOH HOH . F 5 HOH A 138 366 87 HOH HOH . F 5 HOH A 139 367 88 HOH HOH . F 5 HOH A 140 368 89 HOH HOH . F 5 HOH A 141 369 90 HOH HOH . F 5 HOH A 142 370 91 HOH HOH . F 5 HOH A 143 371 92 HOH HOH . F 5 HOH A 144 372 93 HOH HOH . F 5 HOH A 145 373 94 HOH HOH . F 5 HOH A 146 374 95 HOH HOH . F 5 HOH A 147 375 96 HOH HOH . F 5 HOH A 148 376 97 HOH HOH . F 5 HOH A 149 377 99 HOH HOH . F 5 HOH A 150 378 100 HOH HOH . F 5 HOH A 151 379 102 HOH HOH . F 5 HOH A 152 380 103 HOH HOH . F 5 HOH A 153 381 104 HOH HOH . F 5 HOH A 154 382 108 HOH HOH . F 5 HOH A 155 383 109 HOH HOH . F 5 HOH A 156 384 110 HOH HOH . F 5 HOH A 157 385 112 HOH HOH . F 5 HOH A 158 386 113 HOH HOH . F 5 HOH A 159 387 114 HOH HOH . F 5 HOH A 160 388 115 HOH HOH . F 5 HOH A 161 389 116 HOH HOH . F 5 HOH A 162 390 117 HOH HOH . F 5 HOH A 163 391 118 HOH HOH . F 5 HOH A 164 392 119 HOH HOH . F 5 HOH A 165 393 120 HOH HOH . F 5 HOH A 166 394 121 HOH HOH . F 5 HOH A 167 395 122 HOH HOH . F 5 HOH A 168 396 123 HOH HOH . F 5 HOH A 169 397 129 HOH HOH . F 5 HOH A 170 398 131 HOH HOH . F 5 HOH A 171 399 133 HOH HOH . F 5 HOH A 172 400 134 HOH HOH . F 5 HOH A 173 401 135 HOH HOH . F 5 HOH A 174 402 136 HOH HOH . F 5 HOH A 175 403 137 HOH HOH . F 5 HOH A 176 404 138 HOH HOH . F 5 HOH A 177 405 139 HOH HOH . F 5 HOH A 178 406 141 HOH HOH . F 5 HOH A 179 407 142 HOH HOH . F 5 HOH A 180 408 143 HOH HOH . F 5 HOH A 181 409 144 HOH HOH . F 5 HOH A 182 410 145 HOH HOH . F 5 HOH A 183 411 146 HOH HOH . F 5 HOH A 184 412 147 HOH HOH . F 5 HOH A 185 413 148 HOH HOH . F 5 HOH A 186 414 151 HOH HOH . F 5 HOH A 187 415 152 HOH HOH . F 5 HOH A 188 416 153 HOH HOH . F 5 HOH A 189 417 154 HOH HOH . F 5 HOH A 190 418 155 HOH HOH . F 5 HOH A 191 419 156 HOH HOH . F 5 HOH A 192 420 158 HOH HOH . F 5 HOH A 193 421 159 HOH HOH . F 5 HOH A 194 422 160 HOH HOH . F 5 HOH A 195 423 161 HOH HOH . F 5 HOH A 196 424 162 HOH HOH . F 5 HOH A 197 425 163 HOH HOH . F 5 HOH A 198 426 164 HOH HOH . F 5 HOH A 199 427 165 HOH HOH . F 5 HOH A 200 428 168 HOH HOH . F 5 HOH A 201 429 169 HOH HOH . F 5 HOH A 202 430 170 HOH HOH . F 5 HOH A 203 431 171 HOH HOH . F 5 HOH A 204 432 173 HOH HOH . F 5 HOH A 205 433 174 HOH HOH . F 5 HOH A 206 434 175 HOH HOH . F 5 HOH A 207 435 176 HOH HOH . F 5 HOH A 208 436 177 HOH HOH . F 5 HOH A 209 437 179 HOH HOH . F 5 HOH A 210 438 180 HOH HOH . F 5 HOH A 211 439 181 HOH HOH . F 5 HOH A 212 440 182 HOH HOH . F 5 HOH A 213 441 183 HOH HOH . F 5 HOH A 214 442 184 HOH HOH . F 5 HOH A 215 443 185 HOH HOH . F 5 HOH A 216 444 187 HOH HOH . F 5 HOH A 217 445 188 HOH HOH . F 5 HOH A 218 446 189 HOH HOH . F 5 HOH A 219 447 190 HOH HOH . F 5 HOH A 220 448 191 HOH HOH . F 5 HOH A 221 449 192 HOH HOH . F 5 HOH A 222 450 193 HOH HOH . F 5 HOH A 223 451 194 HOH HOH . F 5 HOH A 224 452 195 HOH HOH . F 5 HOH A 225 453 198 HOH HOH . F 5 HOH A 226 454 199 HOH HOH . F 5 HOH A 227 455 202 HOH HOH . F 5 HOH A 228 456 203 HOH HOH . F 5 HOH A 229 457 204 HOH HOH . F 5 HOH A 230 458 205 HOH HOH . F 5 HOH A 231 459 206 HOH HOH . F 5 HOH A 232 460 207 HOH HOH . F 5 HOH A 233 461 209 HOH HOH . F 5 HOH A 234 462 210 HOH HOH . F 5 HOH A 235 463 212 HOH HOH . F 5 HOH A 236 464 213 HOH HOH . F 5 HOH A 237 465 214 HOH HOH . F 5 HOH A 238 466 216 HOH HOH . F 5 HOH A 239 467 219 HOH HOH . F 5 HOH A 240 468 221 HOH HOH . F 5 HOH A 241 469 224 HOH HOH . F 5 HOH A 242 470 226 HOH HOH . F 5 HOH A 243 471 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . D 3 12.724 -4.258 -6.385 0.7 16.22 ? C1 MLT 227 A 1 HETATM 2 O O1 MLT . . . D 3 13.584 -5.18 -6.29 0.7 12.97 ? O1 MLT 227 A 1 HETATM 3 O O2 MLT . . . D 3 12.971 -3.059 -6.082 0.7 17.96 ? O2 MLT 227 A 1 HETATM 4 C C2 MLT . . . D 3 11.34 -4.596 -6.837 0.7 15.77 ? C2 MLT 227 A 1 HETATM 5 O O3 MLT . . . D 3 11.352 -5.96 -7.25 0.7 15.28 ? O3 MLT 227 A 1 HETATM 6 C C3 MLT . . . D 3 10.754 -3.693 -7.914 0.7 17.65 ? C3 MLT 227 A 1 HETATM 7 C C4 MLT . . . D 3 11.599 -3.466 -9.143 0.7 17.73 ? C4 MLT 227 A 1 HETATM 8 O O4 MLT . . . D 3 12.741 -3.952 -9.229 0.7 12.93 ? O4 MLT 227 A 1 HETATM 9 O O5 MLT . . . D 3 11.14 -2.747 -10.077 0.7 22.75 ? O5 MLT 227 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #