data_3QV1 # _model_server_result.job_id WqXlzAB5TZeap8SRG1NwJQ _model_server_result.datetime_utc '2024-10-19 14:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":336}' # _entry.id 3QV1 # _exptl.entry_id 3QV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QV1 _cell.length_a 142.67 _cell.length_b 245.99 _cell.length_c 138.66 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 PISA trimeric 3 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,G,H,J,K,L,M,N,O,P,Q,R,S,V,W,X,Y,BA 1 1 E,F,I,T,U,Z,AA 2 1,2 A,D,G,J,K,L,M,N,S,V,Y,BA 3 1 B,C,H,O,P,Q,R,W,X 4 1 E,T,Z 5 2 F,I,U,AA 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 245.99 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 68 G CYS 64 1_555 G SG CYS 77 G CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 H SG CYS 68 H CYS 64 1_555 H SG CYS 77 H CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 I SG CYS 68 I CYS 64 1_555 I SG CYS 77 I CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3QV1 _atom_sites.fract_transf_matrix[1][1] 0.007009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 3 NAD A 1 335 335 NAD NAD . K 4 PEG A 1 334 2 PEG PEG . L 4 PEG A 1 336 3 PEG PEG . M 5 SO4 A 1 337 1 SO4 SO4 . N 5 SO4 A 1 338 2 SO4 SO4 . O 3 NAD B 1 335 335 NAD NAD . P 3 NAD C 1 335 335 NAD NAD . Q 4 PEG C 1 334 1 PEG PEG . R 6 EDO C 1 336 1 EDO EDO . S 3 NAD D 1 335 335 NAD NAD . T 3 NAD E 1 335 335 NAD NAD . U 3 NAD F 1 335 335 NAD NAD . V 7 HOH A 1 189 189 HOH HOH . V 7 HOH A 2 339 2 HOH HOH . V 7 HOH A 3 340 4 HOH HOH . V 7 HOH A 4 341 13 HOH HOH . V 7 HOH A 5 342 16 HOH HOH . V 7 HOH A 6 343 18 HOH HOH . V 7 HOH A 7 344 24 HOH HOH . V 7 HOH A 8 345 25 HOH HOH . V 7 HOH A 9 346 26 HOH HOH . V 7 HOH A 10 347 27 HOH HOH . V 7 HOH A 11 348 28 HOH HOH . V 7 HOH A 12 349 34 HOH HOH . V 7 HOH A 13 350 39 HOH HOH . V 7 HOH A 14 351 40 HOH HOH . V 7 HOH A 15 352 41 HOH HOH . V 7 HOH A 16 353 42 HOH HOH . V 7 HOH A 17 354 48 HOH HOH . V 7 HOH A 18 355 52 HOH HOH . V 7 HOH A 19 356 61 HOH HOH . V 7 HOH A 20 357 65 HOH HOH . V 7 HOH A 21 358 69 HOH HOH . V 7 HOH A 22 359 70 HOH HOH . V 7 HOH A 23 360 79 HOH HOH . V 7 HOH A 24 361 81 HOH HOH . V 7 HOH A 25 362 85 HOH HOH . V 7 HOH A 26 363 90 HOH HOH . V 7 HOH A 27 364 91 HOH HOH . V 7 HOH A 28 365 95 HOH HOH . V 7 HOH A 29 366 97 HOH HOH . V 7 HOH A 30 367 103 HOH HOH . V 7 HOH A 31 368 113 HOH HOH . V 7 HOH A 32 369 118 HOH HOH . V 7 HOH A 33 370 133 HOH HOH . V 7 HOH A 34 371 134 HOH HOH . V 7 HOH A 35 372 136 HOH HOH . V 7 HOH A 36 373 149 HOH HOH . V 7 HOH A 37 374 151 HOH HOH . V 7 HOH A 38 375 152 HOH HOH . V 7 HOH A 39 376 153 HOH HOH . V 7 HOH A 40 377 154 HOH HOH . V 7 HOH A 41 378 155 HOH HOH . V 7 HOH A 42 379 157 HOH HOH . V 7 HOH A 43 380 158 HOH HOH . V 7 HOH A 44 381 159 HOH HOH . V 7 HOH A 45 382 185 HOH HOH . V 7 HOH A 46 383 188 HOH HOH . V 7 HOH A 47 384 190 HOH HOH . V 7 HOH A 48 385 192 HOH HOH . V 7 HOH A 49 386 194 HOH HOH . V 7 HOH A 50 387 195 HOH HOH . V 7 HOH A 51 388 201 HOH HOH . V 7 HOH A 52 389 203 HOH HOH . V 7 HOH A 53 390 208 HOH HOH . V 7 HOH A 54 391 209 HOH HOH . V 7 HOH A 55 392 211 HOH HOH . V 7 HOH A 56 393 213 HOH HOH . V 7 HOH A 57 394 236 HOH HOH . W 7 HOH B 1 334 3 HOH HOH . W 7 HOH B 2 336 21 HOH HOH . W 7 HOH B 3 337 36 HOH HOH . W 7 HOH B 4 338 47 HOH HOH . W 7 HOH B 5 339 51 HOH HOH . W 7 HOH B 6 340 54 HOH HOH . W 7 HOH B 7 341 59 HOH HOH . W 7 HOH B 8 342 78 HOH HOH . W 7 HOH B 9 343 80 HOH HOH . W 7 HOH B 10 344 89 HOH HOH . W 7 HOH B 11 345 99 HOH HOH . W 7 HOH B 12 346 102 HOH HOH . W 7 HOH B 13 347 108 HOH HOH . W 7 HOH B 14 348 121 HOH HOH . W 7 HOH B 15 349 131 HOH HOH . W 7 HOH B 16 350 141 HOH HOH . W 7 HOH B 17 351 142 HOH HOH . W 7 HOH B 18 352 160 HOH HOH . W 7 HOH B 19 353 161 HOH HOH . W 7 HOH B 20 354 162 HOH HOH . W 7 HOH B 21 355 163 HOH HOH . W 7 HOH B 22 356 166 HOH HOH . W 7 HOH B 23 357 167 HOH HOH . W 7 HOH B 24 358 180 HOH HOH . W 7 HOH B 25 359 187 HOH HOH . W 7 HOH B 26 360 191 HOH HOH . W 7 HOH B 27 361 199 HOH HOH . W 7 HOH B 28 362 206 HOH HOH . W 7 HOH B 29 363 212 HOH HOH . W 7 HOH B 30 364 219 HOH HOH . W 7 HOH B 31 365 220 HOH HOH . W 7 HOH B 32 366 231 HOH HOH . W 7 HOH B 33 367 251 HOH HOH . X 7 HOH C 1 337 11 HOH HOH . X 7 HOH C 2 338 14 HOH HOH . X 7 HOH C 3 339 15 HOH HOH . X 7 HOH C 4 340 19 HOH HOH . X 7 HOH C 5 341 20 HOH HOH . X 7 HOH C 6 342 22 HOH HOH . X 7 HOH C 7 343 23 HOH HOH . X 7 HOH C 8 344 38 HOH HOH . X 7 HOH C 9 345 49 HOH HOH . X 7 HOH C 10 346 56 HOH HOH . X 7 HOH C 11 347 57 HOH HOH . X 7 HOH C 12 348 63 HOH HOH . X 7 HOH C 13 349 71 HOH HOH . X 7 HOH C 14 350 75 HOH HOH . X 7 HOH C 15 351 77 HOH HOH . X 7 HOH C 16 352 82 HOH HOH . X 7 HOH C 17 353 84 HOH HOH . X 7 HOH C 18 354 86 HOH HOH . X 7 HOH C 19 355 92 HOH HOH . X 7 HOH C 20 356 94 HOH HOH . X 7 HOH C 21 357 98 HOH HOH . X 7 HOH C 22 358 107 HOH HOH . X 7 HOH C 23 359 110 HOH HOH . X 7 HOH C 24 360 144 HOH HOH . X 7 HOH C 25 361 165 HOH HOH . X 7 HOH C 26 362 168 HOH HOH . X 7 HOH C 27 363 169 HOH HOH . X 7 HOH C 28 364 171 HOH HOH . X 7 HOH C 29 365 196 HOH HOH . X 7 HOH C 30 366 207 HOH HOH . X 7 HOH C 31 367 249 HOH HOH . Y 7 HOH D 1 35 35 HOH HOH . Y 7 HOH D 2 334 6 HOH HOH . Y 7 HOH D 3 336 43 HOH HOH . Y 7 HOH D 4 337 44 HOH HOH . Y 7 HOH D 5 338 45 HOH HOH . Y 7 HOH D 6 339 46 HOH HOH . Y 7 HOH D 7 340 50 HOH HOH . Y 7 HOH D 8 341 53 HOH HOH . Y 7 HOH D 9 342 68 HOH HOH . Y 7 HOH D 10 343 72 HOH HOH . Y 7 HOH D 11 344 73 HOH HOH . Y 7 HOH D 12 345 76 HOH HOH . Y 7 HOH D 13 346 96 HOH HOH . Y 7 HOH D 14 347 105 HOH HOH . Y 7 HOH D 15 348 106 HOH HOH . Y 7 HOH D 16 349 109 HOH HOH . Y 7 HOH D 17 350 114 HOH HOH . Y 7 HOH D 18 351 115 HOH HOH . Y 7 HOH D 19 352 122 HOH HOH . Y 7 HOH D 20 353 137 HOH HOH . Y 7 HOH D 21 354 139 HOH HOH . Y 7 HOH D 22 355 140 HOH HOH . Y 7 HOH D 23 356 147 HOH HOH . Y 7 HOH D 24 357 156 HOH HOH . Y 7 HOH D 25 358 164 HOH HOH . Y 7 HOH D 26 359 170 HOH HOH . Y 7 HOH D 27 360 172 HOH HOH . Y 7 HOH D 28 361 173 HOH HOH . Y 7 HOH D 29 362 179 HOH HOH . Y 7 HOH D 30 363 182 HOH HOH . Y 7 HOH D 31 364 183 HOH HOH . Y 7 HOH D 32 365 184 HOH HOH . Y 7 HOH D 33 366 186 HOH HOH . Y 7 HOH D 34 367 193 HOH HOH . Y 7 HOH D 35 368 197 HOH HOH . Y 7 HOH D 36 369 202 HOH HOH . Y 7 HOH D 37 370 205 HOH HOH . Y 7 HOH D 38 371 216 HOH HOH . Z 7 HOH E 1 334 5 HOH HOH . Z 7 HOH E 2 336 33 HOH HOH . Z 7 HOH E 3 337 74 HOH HOH . Z 7 HOH E 4 338 101 HOH HOH . Z 7 HOH E 5 339 123 HOH HOH . Z 7 HOH E 6 340 126 HOH HOH . Z 7 HOH E 7 341 128 HOH HOH . Z 7 HOH E 8 342 132 HOH HOH . Z 7 HOH E 9 343 143 HOH HOH . Z 7 HOH E 10 344 145 HOH HOH . Z 7 HOH E 11 345 146 HOH HOH . Z 7 HOH E 12 346 148 HOH HOH . Z 7 HOH E 13 347 174 HOH HOH . Z 7 HOH E 14 348 175 HOH HOH . Z 7 HOH E 15 349 210 HOH HOH . Z 7 HOH E 16 350 227 HOH HOH . Z 7 HOH E 17 351 233 HOH HOH . AA 7 HOH F 1 334 62 HOH HOH . AA 7 HOH F 2 336 83 HOH HOH . AA 7 HOH F 3 337 100 HOH HOH . AA 7 HOH F 4 338 104 HOH HOH . AA 7 HOH F 5 339 124 HOH HOH . AA 7 HOH F 6 340 130 HOH HOH . AA 7 HOH F 7 341 135 HOH HOH . AA 7 HOH F 8 342 138 HOH HOH . AA 7 HOH F 9 343 150 HOH HOH . AA 7 HOH F 10 344 176 HOH HOH . AA 7 HOH F 11 345 177 HOH HOH . AA 7 HOH F 12 346 178 HOH HOH . AA 7 HOH F 13 347 200 HOH HOH . AA 7 HOH F 14 348 204 HOH HOH . BA 7 HOH G 1 198 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 6 6.798 40.802 16.36 1 29.3 ? C1 EDO 336 C 1 HETATM 2 O O1 EDO . . . R 6 5.607 40.372 15.716 1 27 ? O1 EDO 336 C 1 HETATM 3 C C2 EDO . . . R 6 7.626 41.807 15.545 1 29.14 ? C2 EDO 336 C 1 HETATM 4 O O2 EDO . . . R 6 8.728 42.284 16.321 1 29.95 ? O2 EDO 336 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #