data_3QV2 # _model_server_result.job_id NMQVjopVXcT5-N_fJF7XQQ _model_server_result.datetime_utc '2025-02-27 11:42:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":323}' # _entry.id 3QV2 # _exptl.entry_id 3QV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QV2 _cell.length_a 46.97 _cell.length_b 46.97 _cell.length_c 303.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3QV2 _atom_sites.fract_transf_matrix[1][1] 0.02129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 323 1 SAH SAH . C 3 SO4 A 1 324 1 SO4 SO4 . D 3 SO4 A 1 325 2 SO4 SO4 . E 3 SO4 A 1 326 2 SO4 SO4 . F 4 HOH A 1 327 1 HOH HOH . F 4 HOH A 2 328 2 HOH HOH . F 4 HOH A 3 329 3 HOH HOH . F 4 HOH A 4 330 4 HOH HOH . F 4 HOH A 5 331 5 HOH HOH . F 4 HOH A 6 332 6 HOH HOH . F 4 HOH A 7 333 7 HOH HOH . F 4 HOH A 8 334 8 HOH HOH . F 4 HOH A 9 335 9 HOH HOH . F 4 HOH A 10 336 10 HOH HOH . F 4 HOH A 11 337 11 HOH HOH . F 4 HOH A 12 338 12 HOH HOH . F 4 HOH A 13 339 13 HOH HOH . F 4 HOH A 14 340 14 HOH HOH . F 4 HOH A 15 341 15 HOH HOH . F 4 HOH A 16 342 16 HOH HOH . F 4 HOH A 17 343 17 HOH HOH . F 4 HOH A 18 344 18 HOH HOH . F 4 HOH A 19 345 19 HOH HOH . F 4 HOH A 20 346 20 HOH HOH . F 4 HOH A 21 347 21 HOH HOH . F 4 HOH A 22 348 22 HOH HOH . F 4 HOH A 23 349 23 HOH HOH . F 4 HOH A 24 350 24 HOH HOH . F 4 HOH A 25 351 25 HOH HOH . F 4 HOH A 26 352 26 HOH HOH . F 4 HOH A 27 353 27 HOH HOH . F 4 HOH A 28 354 28 HOH HOH . F 4 HOH A 29 355 29 HOH HOH . F 4 HOH A 30 356 30 HOH HOH . F 4 HOH A 31 357 31 HOH HOH . F 4 HOH A 32 358 32 HOH HOH . F 4 HOH A 33 359 33 HOH HOH . F 4 HOH A 34 360 34 HOH HOH . F 4 HOH A 35 361 35 HOH HOH . F 4 HOH A 36 362 36 HOH HOH . F 4 HOH A 37 363 37 HOH HOH . F 4 HOH A 38 364 38 HOH HOH . F 4 HOH A 39 365 39 HOH HOH . F 4 HOH A 40 366 40 HOH HOH . F 4 HOH A 41 367 41 HOH HOH . F 4 HOH A 42 368 42 HOH HOH . F 4 HOH A 43 369 43 HOH HOH . F 4 HOH A 44 370 44 HOH HOH . F 4 HOH A 45 371 45 HOH HOH . F 4 HOH A 46 372 46 HOH HOH . F 4 HOH A 47 373 47 HOH HOH . F 4 HOH A 48 374 48 HOH HOH . F 4 HOH A 49 375 49 HOH HOH . F 4 HOH A 50 376 50 HOH HOH . F 4 HOH A 51 377 51 HOH HOH . F 4 HOH A 52 378 52 HOH HOH . F 4 HOH A 53 379 53 HOH HOH . F 4 HOH A 54 380 54 HOH HOH . F 4 HOH A 55 381 55 HOH HOH . F 4 HOH A 56 382 56 HOH HOH . F 4 HOH A 57 383 57 HOH HOH . F 4 HOH A 58 384 58 HOH HOH . F 4 HOH A 59 385 59 HOH HOH . F 4 HOH A 60 386 60 HOH HOH . F 4 HOH A 61 387 61 HOH HOH . F 4 HOH A 62 388 62 HOH HOH . F 4 HOH A 63 389 63 HOH HOH . F 4 HOH A 64 390 64 HOH HOH . F 4 HOH A 65 391 65 HOH HOH . F 4 HOH A 66 392 66 HOH HOH . F 4 HOH A 67 393 67 HOH HOH . F 4 HOH A 68 394 68 HOH HOH . F 4 HOH A 69 395 69 HOH HOH . F 4 HOH A 70 396 70 HOH HOH . F 4 HOH A 71 397 71 HOH HOH . F 4 HOH A 72 398 72 HOH HOH . F 4 HOH A 73 399 73 HOH HOH . F 4 HOH A 74 400 74 HOH HOH . F 4 HOH A 75 401 75 HOH HOH . F 4 HOH A 76 402 76 HOH HOH . F 4 HOH A 77 403 77 HOH HOH . F 4 HOH A 78 404 78 HOH HOH . F 4 HOH A 79 405 79 HOH HOH . F 4 HOH A 80 406 80 HOH HOH . F 4 HOH A 81 407 81 HOH HOH . F 4 HOH A 82 408 82 HOH HOH . F 4 HOH A 83 409 83 HOH HOH . F 4 HOH A 84 410 84 HOH HOH . F 4 HOH A 85 411 85 HOH HOH . F 4 HOH A 86 412 86 HOH HOH . F 4 HOH A 87 413 87 HOH HOH . F 4 HOH A 88 414 88 HOH HOH . F 4 HOH A 89 415 89 HOH HOH . F 4 HOH A 90 416 90 HOH HOH . F 4 HOH A 91 417 91 HOH HOH . F 4 HOH A 92 418 92 HOH HOH . F 4 HOH A 93 419 93 HOH HOH . F 4 HOH A 94 420 94 HOH HOH . F 4 HOH A 95 421 95 HOH HOH . F 4 HOH A 96 422 96 HOH HOH . F 4 HOH A 97 423 97 HOH HOH . F 4 HOH A 98 424 98 HOH HOH . F 4 HOH A 99 425 99 HOH HOH . F 4 HOH A 100 426 100 HOH HOH . F 4 HOH A 101 427 102 HOH HOH . F 4 HOH A 102 428 103 HOH HOH . F 4 HOH A 103 429 104 HOH HOH . F 4 HOH A 104 430 105 HOH HOH . F 4 HOH A 105 431 106 HOH HOH . F 4 HOH A 106 432 107 HOH HOH . F 4 HOH A 107 433 108 HOH HOH . F 4 HOH A 108 434 109 HOH HOH . F 4 HOH A 109 435 110 HOH HOH . F 4 HOH A 110 436 111 HOH HOH . F 4 HOH A 111 437 112 HOH HOH . F 4 HOH A 112 438 114 HOH HOH . F 4 HOH A 113 439 115 HOH HOH . F 4 HOH A 114 440 116 HOH HOH . F 4 HOH A 115 441 117 HOH HOH . F 4 HOH A 116 442 118 HOH HOH . F 4 HOH A 117 443 119 HOH HOH . F 4 HOH A 118 444 120 HOH HOH . F 4 HOH A 119 445 121 HOH HOH . F 4 HOH A 120 446 122 HOH HOH . F 4 HOH A 121 447 123 HOH HOH . F 4 HOH A 122 448 124 HOH HOH . F 4 HOH A 123 449 125 HOH HOH . F 4 HOH A 124 450 126 HOH HOH . F 4 HOH A 125 451 127 HOH HOH . F 4 HOH A 126 452 128 HOH HOH . F 4 HOH A 127 453 129 HOH HOH . F 4 HOH A 128 454 130 HOH HOH . F 4 HOH A 129 455 131 HOH HOH . F 4 HOH A 130 456 132 HOH HOH . F 4 HOH A 131 457 134 HOH HOH . F 4 HOH A 132 458 135 HOH HOH . F 4 HOH A 133 459 136 HOH HOH . F 4 HOH A 134 460 137 HOH HOH . F 4 HOH A 135 461 138 HOH HOH . F 4 HOH A 136 462 139 HOH HOH . F 4 HOH A 137 463 140 HOH HOH . F 4 HOH A 138 464 141 HOH HOH . F 4 HOH A 139 465 143 HOH HOH . F 4 HOH A 140 466 144 HOH HOH . F 4 HOH A 141 467 145 HOH HOH . F 4 HOH A 142 468 146 HOH HOH . F 4 HOH A 143 469 147 HOH HOH . F 4 HOH A 144 470 148 HOH HOH . F 4 HOH A 145 471 149 HOH HOH . F 4 HOH A 146 472 150 HOH HOH . F 4 HOH A 147 473 151 HOH HOH . F 4 HOH A 148 474 152 HOH HOH . F 4 HOH A 149 475 153 HOH HOH . F 4 HOH A 150 476 154 HOH HOH . F 4 HOH A 151 477 155 HOH HOH . F 4 HOH A 152 478 156 HOH HOH . F 4 HOH A 153 479 157 HOH HOH . F 4 HOH A 154 480 158 HOH HOH . F 4 HOH A 155 481 160 HOH HOH . F 4 HOH A 156 482 161 HOH HOH . F 4 HOH A 157 483 162 HOH HOH . F 4 HOH A 158 484 163 HOH HOH . F 4 HOH A 159 485 164 HOH HOH . F 4 HOH A 160 486 165 HOH HOH . F 4 HOH A 161 487 166 HOH HOH . F 4 HOH A 162 488 167 HOH HOH . F 4 HOH A 163 489 168 HOH HOH . F 4 HOH A 164 490 169 HOH HOH . F 4 HOH A 165 491 170 HOH HOH . F 4 HOH A 166 492 171 HOH HOH . F 4 HOH A 167 493 172 HOH HOH . F 4 HOH A 168 494 173 HOH HOH . F 4 HOH A 169 495 174 HOH HOH . F 4 HOH A 170 496 175 HOH HOH . F 4 HOH A 171 497 176 HOH HOH . F 4 HOH A 172 498 177 HOH HOH . F 4 HOH A 173 499 178 HOH HOH . F 4 HOH A 174 500 179 HOH HOH . F 4 HOH A 175 501 180 HOH HOH . F 4 HOH A 176 502 181 HOH HOH . F 4 HOH A 177 503 182 HOH HOH . F 4 HOH A 178 504 183 HOH HOH . F 4 HOH A 179 505 184 HOH HOH . F 4 HOH A 180 506 185 HOH HOH . F 4 HOH A 181 507 186 HOH HOH . F 4 HOH A 182 508 187 HOH HOH . F 4 HOH A 183 509 189 HOH HOH . F 4 HOH A 184 510 190 HOH HOH . F 4 HOH A 185 511 191 HOH HOH . F 4 HOH A 186 512 192 HOH HOH . F 4 HOH A 187 513 193 HOH HOH . F 4 HOH A 188 514 194 HOH HOH . F 4 HOH A 189 515 196 HOH HOH . F 4 HOH A 190 516 197 HOH HOH . F 4 HOH A 191 517 198 HOH HOH . F 4 HOH A 192 518 200 HOH HOH . F 4 HOH A 193 519 201 HOH HOH . F 4 HOH A 194 520 203 HOH HOH . F 4 HOH A 195 521 204 HOH HOH . F 4 HOH A 196 522 205 HOH HOH . F 4 HOH A 197 523 206 HOH HOH . F 4 HOH A 198 524 208 HOH HOH . F 4 HOH A 199 525 209 HOH HOH . F 4 HOH A 200 526 210 HOH HOH . F 4 HOH A 201 527 211 HOH HOH . F 4 HOH A 202 528 212 HOH HOH . F 4 HOH A 203 529 213 HOH HOH . F 4 HOH A 204 530 214 HOH HOH . F 4 HOH A 205 531 215 HOH HOH . F 4 HOH A 206 532 216 HOH HOH . F 4 HOH A 207 533 217 HOH HOH . F 4 HOH A 208 534 218 HOH HOH . F 4 HOH A 209 535 219 HOH HOH . F 4 HOH A 210 536 220 HOH HOH . F 4 HOH A 211 537 221 HOH HOH . F 4 HOH A 212 538 222 HOH HOH . F 4 HOH A 213 539 223 HOH HOH . F 4 HOH A 214 540 224 HOH HOH . F 4 HOH A 215 541 225 HOH HOH . F 4 HOH A 216 542 226 HOH HOH . F 4 HOH A 217 543 227 HOH HOH . F 4 HOH A 218 544 229 HOH HOH . F 4 HOH A 219 545 230 HOH HOH . F 4 HOH A 220 546 232 HOH HOH . F 4 HOH A 221 547 233 HOH HOH . F 4 HOH A 222 548 234 HOH HOH . F 4 HOH A 223 549 1 HOH HOH . F 4 HOH A 224 550 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 12.978 -20.585 19.584 1 22.58 ? N SAH 323 A 1 HETATM 2 C CA SAH . . . B 2 14.092 -19.661 19.675 1 21.57 ? CA SAH 323 A 1 HETATM 3 C CB SAH . . . B 2 15.288 -20.17 18.882 1 21.8 ? CB SAH 323 A 1 HETATM 4 C CG SAH . . . B 2 15.459 -21.658 18.695 1 22.36 ? CG SAH 323 A 1 HETATM 5 S SD SAH . . . B 2 16.839 -22.211 17.673 1 19.15 ? SD SAH 323 A 1 HETATM 6 C C SAH . . . B 2 13.652 -18.301 19.195 1 18.21 ? C SAH 323 A 1 HETATM 7 O O SAH . . . B 2 14.5 -17.506 18.699 1 21.03 ? O SAH 323 A 1 HETATM 8 O OXT SAH . . . B 2 12.426 -17.954 19.295 1 15.75 ? OXT SAH 323 A 1 HETATM 9 C C5' SAH . . . B 2 17.839 -23.351 18.605 1 23.78 ? C5' SAH 323 A 1 HETATM 10 C C4' SAH . . . B 2 18.792 -22.798 19.6 1 24.41 ? C4' SAH 323 A 1 HETATM 11 O O4' SAH . . . B 2 19.265 -23.839 20.381 1 25.37 ? O4' SAH 323 A 1 HETATM 12 C C3' SAH . . . B 2 19.943 -22.214 18.908 1 22.59 ? C3' SAH 323 A 1 HETATM 13 O O3' SAH . . . B 2 19.944 -20.838 19.08 1 21.39 ? O3' SAH 323 A 1 HETATM 14 C C2' SAH . . . B 2 21.128 -22.787 19.493 1 23.85 ? C2' SAH 323 A 1 HETATM 15 O O2' SAH . . . B 2 22.015 -21.784 19.845 1 21.9 ? O2' SAH 323 A 1 HETATM 16 C C1' SAH . . . B 2 20.653 -23.495 20.685 1 20.2 ? C1' SAH 323 A 1 HETATM 17 N N9 SAH . . . B 2 21.497 -24.609 21.011 1 20.62 ? N9 SAH 323 A 1 HETATM 18 C C8 SAH . . . B 2 21.974 -25.593 20.237 1 21.61 ? C8 SAH 323 A 1 HETATM 19 N N7 SAH . . . B 2 22.716 -26.393 21.02 1 21.16 ? N7 SAH 323 A 1 HETATM 20 C C5 SAH . . . B 2 22.7 -25.9 22.282 1 21.66 ? C5 SAH 323 A 1 HETATM 21 C C6 SAH . . . B 2 23.285 -26.313 23.481 1 19.99 ? C6 SAH 323 A 1 HETATM 22 N N6 SAH . . . B 2 24.107 -27.497 23.531 1 17.83 ? N6 SAH 323 A 1 HETATM 23 N N1 SAH . . . B 2 23.064 -25.577 24.585 1 19.09 ? N1 SAH 323 A 1 HETATM 24 C C2 SAH . . . B 2 22.305 -24.473 24.562 1 17.43 ? C2 SAH 323 A 1 HETATM 25 N N3 SAH . . . B 2 21.734 -24.06 23.425 1 20.42 ? N3 SAH 323 A 1 HETATM 26 C C4 SAH . . . B 2 21.915 -24.748 22.283 1 22.06 ? C4 SAH 323 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #