data_3QV6 # _model_server_result.job_id wKUXv8Oh4sppP44ZAdVCyw _model_server_result.datetime_utc '2024-11-19 14:42:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 3QV6 # _exptl.entry_id 3QV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.19 _cell.angle_gamma 90 _cell.entry_id 3QV6 _cell.length_a 130.053 _cell.length_b 127.495 _cell.length_c 118.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 51 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc2 A OG SER 54 A SER 53 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc3 A OD1 ASP 84 A ASP 83 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc4 A O THR 85 A THR 84 1_555 E K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc5 A O GLN 355 A GLN 354 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.173 ? metalc ? metalc6 A O LEU 358 A LEU 357 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc7 A OE2 GLU 360 A GLU 359 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.327 ? metalc ? metalc8 A OE1 GLU 360 A GLU 359 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.355 ? metalc ? metalc9 E K K . A K 501 1_555 K O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc10 F K K . A K 502 1_555 K O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc11 B OD1 ASN 52 D ASN 51 1_555 H K K . D K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.186 ? metalc ? metalc12 B OG SER 54 D SER 53 1_555 H K K . D K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc13 B OD1 ASP 84 D ASP 83 1_555 H K K . D K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.231 ? metalc ? metalc14 B O THR 85 D THR 84 1_555 H K K . D K 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc15 B O GLN 355 D GLN 354 1_555 I K K . D K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc16 B O LEU 358 D LEU 357 1_555 I K K . D K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc17 B OE1 GLU 360 D GLU 359 1_555 I K K . D K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc18 B OE2 GLU 360 D GLU 359 1_555 I K K . D K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.461 ? metalc ? metalc19 H K K . D K 499 1_555 L O HOH . D HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc20 I K K . D K 500 1_555 L O HOH . D HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3QV6 _atom_sites.fract_transf_matrix[1][1] 0.007689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003782 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QV6 A 1 499 1 QV6 QV6 . D 2 QV6 A 1 500 1 QV6 QV6 . E 3 K A 1 501 2 K K . F 3 K A 1 502 4 K K . G 4 PO4 A 1 503 1 PO4 PO4 . H 3 K D 1 499 1 K K . I 3 K D 1 500 3 K K . J 4 PO4 D 1 501 2 PO4 PO4 . K 5 HOH A 1 504 1 HOH HOH . K 5 HOH A 2 505 6 HOH HOH . K 5 HOH A 3 506 7 HOH HOH . K 5 HOH A 4 507 14 HOH HOH . K 5 HOH A 5 508 16 HOH HOH . K 5 HOH A 6 509 20 HOH HOH . K 5 HOH A 7 510 22 HOH HOH . K 5 HOH A 8 511 23 HOH HOH . K 5 HOH A 9 512 24 HOH HOH . K 5 HOH A 10 513 36 HOH HOH . K 5 HOH A 11 514 38 HOH HOH . K 5 HOH A 12 515 39 HOH HOH . K 5 HOH A 13 516 41 HOH HOH . K 5 HOH A 14 517 44 HOH HOH . K 5 HOH A 15 518 45 HOH HOH . K 5 HOH A 16 519 55 HOH HOH . K 5 HOH A 17 520 56 HOH HOH . K 5 HOH A 18 521 57 HOH HOH . K 5 HOH A 19 522 60 HOH HOH . K 5 HOH A 20 523 63 HOH HOH . K 5 HOH A 21 524 64 HOH HOH . K 5 HOH A 22 525 65 HOH HOH . K 5 HOH A 23 526 67 HOH HOH . K 5 HOH A 24 527 69 HOH HOH . K 5 HOH A 25 528 70 HOH HOH . K 5 HOH A 26 529 71 HOH HOH . K 5 HOH A 27 530 72 HOH HOH . K 5 HOH A 28 531 75 HOH HOH . K 5 HOH A 29 532 80 HOH HOH . K 5 HOH A 30 533 81 HOH HOH . K 5 HOH A 31 534 84 HOH HOH . K 5 HOH A 32 535 85 HOH HOH . K 5 HOH A 33 536 86 HOH HOH . K 5 HOH A 34 537 88 HOH HOH . K 5 HOH A 35 538 95 HOH HOH . K 5 HOH A 36 539 97 HOH HOH . K 5 HOH A 37 540 98 HOH HOH . K 5 HOH A 38 541 100 HOH HOH . K 5 HOH A 39 542 101 HOH HOH . K 5 HOH A 40 543 103 HOH HOH . K 5 HOH A 41 544 106 HOH HOH . K 5 HOH A 42 545 107 HOH HOH . K 5 HOH A 43 546 108 HOH HOH . K 5 HOH A 44 547 113 HOH HOH . K 5 HOH A 45 548 119 HOH HOH . K 5 HOH A 46 549 126 HOH HOH . K 5 HOH A 47 550 127 HOH HOH . K 5 HOH A 48 551 129 HOH HOH . K 5 HOH A 49 552 134 HOH HOH . K 5 HOH A 50 553 139 HOH HOH . K 5 HOH A 51 554 141 HOH HOH . K 5 HOH A 52 555 153 HOH HOH . K 5 HOH A 53 556 160 HOH HOH . K 5 HOH A 54 557 168 HOH HOH . K 5 HOH A 55 558 175 HOH HOH . K 5 HOH A 56 559 177 HOH HOH . K 5 HOH A 57 560 187 HOH HOH . L 5 HOH D 1 502 4 HOH HOH . L 5 HOH D 2 503 8 HOH HOH . L 5 HOH D 3 504 15 HOH HOH . L 5 HOH D 4 505 17 HOH HOH . L 5 HOH D 5 506 19 HOH HOH . L 5 HOH D 6 507 25 HOH HOH . L 5 HOH D 7 508 27 HOH HOH . L 5 HOH D 8 509 30 HOH HOH . L 5 HOH D 9 510 32 HOH HOH . L 5 HOH D 10 511 37 HOH HOH . L 5 HOH D 11 512 43 HOH HOH . L 5 HOH D 12 513 48 HOH HOH . L 5 HOH D 13 514 49 HOH HOH . L 5 HOH D 14 515 52 HOH HOH . L 5 HOH D 15 516 53 HOH HOH . L 5 HOH D 16 517 54 HOH HOH . L 5 HOH D 17 518 58 HOH HOH . L 5 HOH D 18 519 59 HOH HOH . L 5 HOH D 19 520 61 HOH HOH . L 5 HOH D 20 521 62 HOH HOH . L 5 HOH D 21 522 66 HOH HOH . L 5 HOH D 22 523 68 HOH HOH . L 5 HOH D 23 524 73 HOH HOH . L 5 HOH D 24 525 76 HOH HOH . L 5 HOH D 25 526 79 HOH HOH . L 5 HOH D 26 527 87 HOH HOH . L 5 HOH D 27 528 89 HOH HOH . L 5 HOH D 28 529 96 HOH HOH . L 5 HOH D 29 530 99 HOH HOH . L 5 HOH D 30 531 102 HOH HOH . L 5 HOH D 31 532 110 HOH HOH . L 5 HOH D 32 533 111 HOH HOH . L 5 HOH D 33 534 112 HOH HOH . L 5 HOH D 34 535 114 HOH HOH . L 5 HOH D 35 536 115 HOH HOH . L 5 HOH D 36 537 117 HOH HOH . L 5 HOH D 37 538 124 HOH HOH . L 5 HOH D 38 539 125 HOH HOH . L 5 HOH D 39 540 131 HOH HOH . L 5 HOH D 40 541 137 HOH HOH . L 5 HOH D 41 542 142 HOH HOH . L 5 HOH D 42 543 143 HOH HOH . L 5 HOH D 43 544 148 HOH HOH . L 5 HOH D 44 545 150 HOH HOH . L 5 HOH D 45 546 154 HOH HOH . L 5 HOH D 46 547 156 HOH HOH . L 5 HOH D 47 548 167 HOH HOH . L 5 HOH D 48 549 186 HOH HOH . L 5 HOH D 49 550 188 HOH HOH . L 5 HOH D 50 551 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 4 30.714 -44.311 -7.61 1 113.99 ? P PO4 503 A 1 HETATM 2 O O1 PO4 . . . G 4 31.752 -44.404 -8.704 1 113.99 ? O1 PO4 503 A 1 HETATM 3 O O2 PO4 . . . G 4 29.431 -43.766 -8.183 1 113.91 ? O2 PO4 503 A 1 HETATM 4 O O3 PO4 . . . G 4 30.454 -45.68 -7.022 1 113.98 ? O3 PO4 503 A 1 HETATM 5 O O4 PO4 . . . G 4 31.212 -43.373 -6.537 1 114.13 ? O4 PO4 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #