data_3QVB # _model_server_result.job_id g5dqEhRQ-dTO4Z_bvVWrjw _model_server_result.datetime_utc '2024-11-16 07:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":268}' # _entry.id 3QVB # _exptl.entry_id 3QVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QVB _cell.length_a 57.4 _cell.length_b 100.97 _cell.length_c 48.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 57.4 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 103 A ASP 102 1_555 B MN MN . A MN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc2 A OD1 ASP 105 A ASP 104 1_555 B MN MN . A MN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 A NE2 HIS 213 A HIS 212 1_555 B MN MN . A MN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 B MN MN . A MN 263 1_555 C O2B UDP . A UDP 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc5 B MN MN . A MN 263 1_555 C O1A UDP . A UDP 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3QVB _atom_sites.fract_transf_matrix[1][1] 0.017422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 263 1 MN MN . C 3 UDP A 1 264 1 UDP UDP . D 4 EDO A 1 265 1 EDO EDO . E 4 EDO A 1 266 2 EDO EDO . F 4 EDO A 1 267 3 EDO EDO . G 4 EDO A 1 268 4 EDO EDO . H 4 EDO A 1 269 5 EDO EDO . I 5 HOH A 1 270 2 HOH HOH . I 5 HOH A 2 271 3 HOH HOH . I 5 HOH A 3 272 5 HOH HOH . I 5 HOH A 4 273 7 HOH HOH . I 5 HOH A 5 274 8 HOH HOH . I 5 HOH A 6 275 9 HOH HOH . I 5 HOH A 7 276 11 HOH HOH . I 5 HOH A 8 277 12 HOH HOH . I 5 HOH A 9 278 13 HOH HOH . I 5 HOH A 10 279 15 HOH HOH . I 5 HOH A 11 280 16 HOH HOH . I 5 HOH A 12 281 17 HOH HOH . I 5 HOH A 13 282 18 HOH HOH . I 5 HOH A 14 283 19 HOH HOH . I 5 HOH A 15 284 21 HOH HOH . I 5 HOH A 16 285 23 HOH HOH . I 5 HOH A 17 286 24 HOH HOH . I 5 HOH A 18 287 25 HOH HOH . I 5 HOH A 19 288 27 HOH HOH . I 5 HOH A 20 289 28 HOH HOH . I 5 HOH A 21 290 29 HOH HOH . I 5 HOH A 22 291 30 HOH HOH . I 5 HOH A 23 292 31 HOH HOH . I 5 HOH A 24 293 32 HOH HOH . I 5 HOH A 25 294 33 HOH HOH . I 5 HOH A 26 295 34 HOH HOH . I 5 HOH A 27 296 35 HOH HOH . I 5 HOH A 28 297 36 HOH HOH . I 5 HOH A 29 298 38 HOH HOH . I 5 HOH A 30 299 39 HOH HOH . I 5 HOH A 31 300 41 HOH HOH . I 5 HOH A 32 301 42 HOH HOH . I 5 HOH A 33 302 43 HOH HOH . I 5 HOH A 34 303 44 HOH HOH . I 5 HOH A 35 304 45 HOH HOH . I 5 HOH A 36 305 46 HOH HOH . I 5 HOH A 37 306 48 HOH HOH . I 5 HOH A 38 307 49 HOH HOH . I 5 HOH A 39 308 50 HOH HOH . I 5 HOH A 40 309 51 HOH HOH . I 5 HOH A 41 310 54 HOH HOH . I 5 HOH A 42 311 55 HOH HOH . I 5 HOH A 43 312 56 HOH HOH . I 5 HOH A 44 313 57 HOH HOH . I 5 HOH A 45 314 58 HOH HOH . I 5 HOH A 46 315 59 HOH HOH . I 5 HOH A 47 316 60 HOH HOH . I 5 HOH A 48 317 61 HOH HOH . I 5 HOH A 49 318 63 HOH HOH . I 5 HOH A 50 319 64 HOH HOH . I 5 HOH A 51 320 66 HOH HOH . I 5 HOH A 52 321 67 HOH HOH . I 5 HOH A 53 322 68 HOH HOH . I 5 HOH A 54 323 69 HOH HOH . I 5 HOH A 55 324 71 HOH HOH . I 5 HOH A 56 325 72 HOH HOH . I 5 HOH A 57 326 73 HOH HOH . I 5 HOH A 58 327 74 HOH HOH . I 5 HOH A 59 328 75 HOH HOH . I 5 HOH A 60 329 76 HOH HOH . I 5 HOH A 61 330 77 HOH HOH . I 5 HOH A 62 331 78 HOH HOH . I 5 HOH A 63 332 79 HOH HOH . I 5 HOH A 64 333 80 HOH HOH . I 5 HOH A 65 334 81 HOH HOH . I 5 HOH A 66 335 82 HOH HOH . I 5 HOH A 67 336 83 HOH HOH . I 5 HOH A 68 337 84 HOH HOH . I 5 HOH A 69 338 85 HOH HOH . I 5 HOH A 70 339 86 HOH HOH . I 5 HOH A 71 340 87 HOH HOH . I 5 HOH A 72 341 88 HOH HOH . I 5 HOH A 73 342 89 HOH HOH . I 5 HOH A 74 343 90 HOH HOH . I 5 HOH A 75 344 91 HOH HOH . I 5 HOH A 76 345 92 HOH HOH . I 5 HOH A 77 346 93 HOH HOH . I 5 HOH A 78 347 94 HOH HOH . I 5 HOH A 79 348 95 HOH HOH . I 5 HOH A 80 349 96 HOH HOH . I 5 HOH A 81 350 97 HOH HOH . I 5 HOH A 82 351 98 HOH HOH . I 5 HOH A 83 352 102 HOH HOH . I 5 HOH A 84 353 103 HOH HOH . I 5 HOH A 85 354 105 HOH HOH . I 5 HOH A 86 355 106 HOH HOH . I 5 HOH A 87 356 107 HOH HOH . I 5 HOH A 88 357 108 HOH HOH . I 5 HOH A 89 358 110 HOH HOH . I 5 HOH A 90 359 111 HOH HOH . I 5 HOH A 91 360 113 HOH HOH . I 5 HOH A 92 361 114 HOH HOH . I 5 HOH A 93 362 115 HOH HOH . I 5 HOH A 94 363 116 HOH HOH . I 5 HOH A 95 364 117 HOH HOH . I 5 HOH A 96 365 118 HOH HOH . I 5 HOH A 97 366 119 HOH HOH . I 5 HOH A 98 367 120 HOH HOH . I 5 HOH A 99 368 121 HOH HOH . I 5 HOH A 100 369 122 HOH HOH . I 5 HOH A 101 370 123 HOH HOH . I 5 HOH A 102 371 124 HOH HOH . I 5 HOH A 103 372 125 HOH HOH . I 5 HOH A 104 373 127 HOH HOH . I 5 HOH A 105 374 128 HOH HOH . I 5 HOH A 106 375 129 HOH HOH . I 5 HOH A 107 376 130 HOH HOH . I 5 HOH A 108 377 131 HOH HOH . I 5 HOH A 109 378 132 HOH HOH . I 5 HOH A 110 379 133 HOH HOH . I 5 HOH A 111 380 134 HOH HOH . I 5 HOH A 112 381 135 HOH HOH . I 5 HOH A 113 382 138 HOH HOH . I 5 HOH A 114 383 139 HOH HOH . I 5 HOH A 115 384 140 HOH HOH . I 5 HOH A 116 385 141 HOH HOH . I 5 HOH A 117 386 142 HOH HOH . I 5 HOH A 118 387 144 HOH HOH . I 5 HOH A 119 388 145 HOH HOH . I 5 HOH A 120 389 146 HOH HOH . I 5 HOH A 121 390 147 HOH HOH . I 5 HOH A 122 391 148 HOH HOH . I 5 HOH A 123 392 149 HOH HOH . I 5 HOH A 124 393 150 HOH HOH . I 5 HOH A 125 394 151 HOH HOH . I 5 HOH A 126 395 152 HOH HOH . I 5 HOH A 127 396 153 HOH HOH . I 5 HOH A 128 397 154 HOH HOH . I 5 HOH A 129 398 155 HOH HOH . I 5 HOH A 130 399 156 HOH HOH . I 5 HOH A 131 400 157 HOH HOH . I 5 HOH A 132 401 158 HOH HOH . I 5 HOH A 133 402 159 HOH HOH . I 5 HOH A 134 403 160 HOH HOH . I 5 HOH A 135 404 161 HOH HOH . I 5 HOH A 136 405 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 15.581 29.755 16.708 1 62.43 ? C1 EDO 268 A 1 HETATM 2 O O1 EDO . . . G 4 15.436 28.83 17.791 1 63.14 ? O1 EDO 268 A 1 HETATM 3 C C2 EDO . . . G 4 16.975 29.597 16.112 1 62.59 ? C2 EDO 268 A 1 HETATM 4 O O2 EDO . . . G 4 17.711 30.823 16.226 1 62.28 ? O2 EDO 268 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #