data_3QVF # _model_server_result.job_id sJbDSHoyfMWHk5kE3N-mOw _model_server_result.datetime_utc '2024-11-14 08:02:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4001}' # _entry.id 3QVF # _exptl.entry_id 3QVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description dihydroxy{[(2R,3S)-3-methyloxiran-2-yl]phosphonato-kappaO}oxovanadium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QVF _cell.length_a 87.38 _cell.length_b 87.38 _cell.length_c 79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 79 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O HOH . A HOH 330 1_555 D MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 E O HOH . A HOH 357 1_555 D MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc3 E O HOH . A HOH 375 1_555 D MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 B O1B ADP . A ADP 1260 1_555 D MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 B O2A ADP . A ADP 1260 1_555 D MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 C O3 FV1 . A FV1 4001 1_555 D MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C3 H8 O7 P V' _chem_comp.formula_weight 238.007 _chem_comp.id FV1 _chem_comp.mon_nstd_flag . _chem_comp.name dihydroxy{[(2R,3S)-3-methyloxiran-2-yl]phosphonato-kappaO}oxovanadium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C1 FV1 sing 127 n n O C2 FV1 sing 128 n n P O3P FV1 sing 129 n n P C1 FV1 sing 130 n n V O2P FV1 sing 131 n n V O3 FV1 doub 132 n n C1 C2 FV1 sing 133 n n C1 H1 FV1 sing 134 n n O1 V FV1 sing 135 n n O1 HO1 FV1 sing 136 n n C2 H2 FV1 sing 137 n n O2 V FV1 sing 138 n n O2 HO2 FV1 sing 139 n n C3 C2 FV1 sing 140 n n C3 H3 FV1 sing 141 n n C3 H3A FV1 sing 142 n n C3 H3B FV1 sing 143 n n O1P P FV1 doub 144 n n O2P P FV1 sing 145 n n O3P HO3P FV1 sing 146 n n # _atom_sites.entry_id 3QVF _atom_sites.fract_transf_matrix[1][1] 0.011444 _atom_sites.fract_transf_matrix[1][2] 0.006607 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1260 1260 ADP ADP . C 3 FV1 A 1 4001 4001 FV1 FV1 . D 4 MG A 1 5000 5000 MG MG . E 5 HOH A 1 267 1 HOH HOH . E 5 HOH A 2 268 2 HOH HOH . E 5 HOH A 3 269 3 HOH HOH . E 5 HOH A 4 270 4 HOH HOH . E 5 HOH A 5 271 5 HOH HOH . E 5 HOH A 6 272 6 HOH HOH . E 5 HOH A 7 273 7 HOH HOH . E 5 HOH A 8 274 8 HOH HOH . E 5 HOH A 9 275 9 HOH HOH . E 5 HOH A 10 276 10 HOH HOH . E 5 HOH A 11 277 11 HOH HOH . E 5 HOH A 12 278 12 HOH HOH . E 5 HOH A 13 279 13 HOH HOH . E 5 HOH A 14 280 14 HOH HOH . E 5 HOH A 15 281 15 HOH HOH . E 5 HOH A 16 282 16 HOH HOH . E 5 HOH A 17 283 17 HOH HOH . E 5 HOH A 18 284 18 HOH HOH . E 5 HOH A 19 285 19 HOH HOH . E 5 HOH A 20 286 20 HOH HOH . E 5 HOH A 21 287 21 HOH HOH . E 5 HOH A 22 288 22 HOH HOH . E 5 HOH A 23 289 23 HOH HOH . E 5 HOH A 24 290 24 HOH HOH . E 5 HOH A 25 291 25 HOH HOH . E 5 HOH A 26 292 26 HOH HOH . E 5 HOH A 27 293 27 HOH HOH . E 5 HOH A 28 294 28 HOH HOH . E 5 HOH A 29 295 29 HOH HOH . E 5 HOH A 30 296 30 HOH HOH . E 5 HOH A 31 297 31 HOH HOH . E 5 HOH A 32 298 32 HOH HOH . E 5 HOH A 33 299 33 HOH HOH . E 5 HOH A 34 300 34 HOH HOH . E 5 HOH A 35 301 35 HOH HOH . E 5 HOH A 36 302 36 HOH HOH . E 5 HOH A 37 303 37 HOH HOH . E 5 HOH A 38 304 38 HOH HOH . E 5 HOH A 39 305 39 HOH HOH . E 5 HOH A 40 306 40 HOH HOH . E 5 HOH A 41 307 41 HOH HOH . E 5 HOH A 42 308 42 HOH HOH . E 5 HOH A 43 309 43 HOH HOH . E 5 HOH A 44 310 44 HOH HOH . E 5 HOH A 45 311 45 HOH HOH . E 5 HOH A 46 312 46 HOH HOH . E 5 HOH A 47 313 47 HOH HOH . E 5 HOH A 48 314 48 HOH HOH . E 5 HOH A 49 315 49 HOH HOH . E 5 HOH A 50 316 50 HOH HOH . E 5 HOH A 51 317 51 HOH HOH . E 5 HOH A 52 318 52 HOH HOH . E 5 HOH A 53 319 53 HOH HOH . E 5 HOH A 54 320 54 HOH HOH . E 5 HOH A 55 321 55 HOH HOH . E 5 HOH A 56 322 56 HOH HOH . E 5 HOH A 57 323 57 HOH HOH . E 5 HOH A 58 324 58 HOH HOH . E 5 HOH A 59 325 59 HOH HOH . E 5 HOH A 60 326 60 HOH HOH . E 5 HOH A 61 327 61 HOH HOH . E 5 HOH A 62 328 62 HOH HOH . E 5 HOH A 63 329 63 HOH HOH . E 5 HOH A 64 330 64 HOH HOH . E 5 HOH A 65 331 65 HOH HOH . E 5 HOH A 66 332 66 HOH HOH . E 5 HOH A 67 333 67 HOH HOH . E 5 HOH A 68 334 68 HOH HOH . E 5 HOH A 69 335 69 HOH HOH . E 5 HOH A 70 336 70 HOH HOH . E 5 HOH A 71 337 71 HOH HOH . E 5 HOH A 72 338 72 HOH HOH . E 5 HOH A 73 339 73 HOH HOH . E 5 HOH A 74 340 74 HOH HOH . E 5 HOH A 75 341 75 HOH HOH . E 5 HOH A 76 342 76 HOH HOH . E 5 HOH A 77 343 77 HOH HOH . E 5 HOH A 78 344 78 HOH HOH . E 5 HOH A 79 345 79 HOH HOH . E 5 HOH A 80 346 80 HOH HOH . E 5 HOH A 81 347 81 HOH HOH . E 5 HOH A 82 348 82 HOH HOH . E 5 HOH A 83 349 83 HOH HOH . E 5 HOH A 84 350 84 HOH HOH . E 5 HOH A 85 351 85 HOH HOH . E 5 HOH A 86 352 86 HOH HOH . E 5 HOH A 87 353 87 HOH HOH . E 5 HOH A 88 354 88 HOH HOH . E 5 HOH A 89 355 89 HOH HOH . E 5 HOH A 90 356 90 HOH HOH . E 5 HOH A 91 357 91 HOH HOH . E 5 HOH A 92 358 92 HOH HOH . E 5 HOH A 93 359 93 HOH HOH . E 5 HOH A 94 360 94 HOH HOH . E 5 HOH A 95 361 95 HOH HOH . E 5 HOH A 96 362 96 HOH HOH . E 5 HOH A 97 363 97 HOH HOH . E 5 HOH A 98 364 98 HOH HOH . E 5 HOH A 99 365 99 HOH HOH . E 5 HOH A 100 366 100 HOH HOH . E 5 HOH A 101 367 101 HOH HOH . E 5 HOH A 102 368 102 HOH HOH . E 5 HOH A 103 369 103 HOH HOH . E 5 HOH A 104 370 104 HOH HOH . E 5 HOH A 105 371 105 HOH HOH . E 5 HOH A 106 372 106 HOH HOH . E 5 HOH A 107 373 107 HOH HOH . E 5 HOH A 108 374 108 HOH HOH . E 5 HOH A 109 375 109 HOH HOH . E 5 HOH A 110 376 110 HOH HOH . E 5 HOH A 111 377 111 HOH HOH . E 5 HOH A 112 378 112 HOH HOH . E 5 HOH A 113 379 113 HOH HOH . E 5 HOH A 114 380 114 HOH HOH . E 5 HOH A 115 381 115 HOH HOH . E 5 HOH A 116 382 116 HOH HOH . E 5 HOH A 117 383 117 HOH HOH . E 5 HOH A 118 384 118 HOH HOH . E 5 HOH A 119 385 119 HOH HOH . E 5 HOH A 120 386 120 HOH HOH . E 5 HOH A 121 387 121 HOH HOH . E 5 HOH A 122 388 122 HOH HOH . E 5 HOH A 123 389 123 HOH HOH . E 5 HOH A 124 390 124 HOH HOH . E 5 HOH A 125 391 125 HOH HOH . E 5 HOH A 126 392 126 HOH HOH . E 5 HOH A 127 393 127 HOH HOH . E 5 HOH A 128 394 128 HOH HOH . E 5 HOH A 129 395 129 HOH HOH . E 5 HOH A 130 396 130 HOH HOH . E 5 HOH A 131 397 131 HOH HOH . E 5 HOH A 132 398 132 HOH HOH . E 5 HOH A 133 399 133 HOH HOH . E 5 HOH A 134 400 134 HOH HOH . E 5 HOH A 135 401 135 HOH HOH . E 5 HOH A 136 402 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O FV1 . . . C 3 -0.182 27.349 41.289 1 35.58 ? O FV1 4001 A 1 HETATM 2 P P FV1 . . . C 3 -1.349 29.48 39.851 1 34.46 ? P FV1 4001 A 1 HETATM 3 V V FV1 . . . C 3 -3.961 28.482 38.118 1 65.98 ? V FV1 4001 A 1 HETATM 4 C C1 FV1 . . . C 3 -1.178 28.423 41.299 1 34.93 ? C1 FV1 4001 A 1 HETATM 5 O O1 FV1 . . . C 3 -3.872 26.551 38.108 1 39.29 ? O1 FV1 4001 A 1 HETATM 6 C C2 FV1 . . . C 3 0.062 28.369 42.224 1 36.2 ? C2 FV1 4001 A 1 HETATM 7 O O2 FV1 . . . C 3 -3.694 29.308 36.408 1 38.9 ? O2 FV1 4001 A 1 HETATM 8 C C3 FV1 . . . C 3 1.21 29.405 42.134 1 34.87 ? C3 FV1 4001 A 1 HETATM 9 O O3 FV1 . . . C 3 -5.689 29.212 38.927 1 47.58 ? O3 FV1 4001 A 1 HETATM 10 O O1P FV1 . . . C 3 0.008 29.73 39.221 1 31.53 ? O1P FV1 4001 A 1 HETATM 11 O O2P FV1 . . . C 3 -2.159 28.702 38.814 1 34.25 ? O2P FV1 4001 A 1 HETATM 12 O O3P FV1 . . . C 3 -2.15 30.739 40.342 1 31.86 ? O3P FV1 4001 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #