data_3QVO # _model_server_result.job_id iULwTL1-Ha9ll1O4a-uBPg _model_server_result.datetime_utc '2024-12-12 04:48:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":215}' # _entry.id 3QVO # _exptl.entry_id 3QVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.184 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-MERCAPTO-2-NITRO-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QVO _cell.length_a 73.524 _cell.length_b 73.524 _cell.length_c 130.246 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 22 A HIS 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N LYS 24 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ILE 72 A ILE 50 1_555 A N MSE 73 A MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 73 A MSE 51 1_555 A N GLY 74 A GLY 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale5 A C ALA 85 A ALA 63 1_555 A N MSE 86 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 86 A MSE 64 1_555 A N GLN 87 A GLN 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale7 A C ALA 111 A ALA 89 1_555 A N MSE 112 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale8 A C MSE 112 A MSE 90 1_555 A N LYS 113 A LYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A SG CYS 115 A CYS 93 1_555 B S5 MNB . A MNB 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale10 A C PHE 233 A PHE 211 1_555 A N MSE 234 A MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C7 H5 N O4 S' _chem_comp.formula_weight 199.184 _chem_comp.id MNB _chem_comp.mon_nstd_flag . _chem_comp.name '5-MERCAPTO-2-NITRO-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 MNB doub 218 n y C6 C5 MNB sing 219 n y C6 HC6 MNB sing 220 n n C1 C2 MNB sing 221 n y C1 C10 MNB sing 222 n n C2 C3 MNB doub 223 n y C2 N7 MNB sing 224 n n C3 C4 MNB sing 225 n y C3 HC3 MNB sing 226 n n C4 C5 MNB doub 227 n y C4 HC4 MNB sing 228 n n C5 S5 MNB sing 229 n n S5 HS5 MNB sing 230 n n C10 O12 MNB sing 231 n n C10 O11 MNB doub 232 n n O12 H12 MNB sing 233 n n N7 O9 MNB doub 234 n n N7 O8 MNB sing 235 n n # _atom_sites.entry_id 3QVO _atom_sites.fract_transf_matrix[1][1] 0.013601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MNB A 1 215 1 MNB MNB . C 3 HOH A 1 216 1 HOH HOH . C 3 HOH A 2 217 2 HOH HOH . C 3 HOH A 3 218 3 HOH HOH . C 3 HOH A 4 219 4 HOH HOH . C 3 HOH A 5 220 5 HOH HOH . C 3 HOH A 6 221 6 HOH HOH . C 3 HOH A 7 222 7 HOH HOH . C 3 HOH A 8 223 8 HOH HOH . C 3 HOH A 9 224 9 HOH HOH . C 3 HOH A 10 225 10 HOH HOH . C 3 HOH A 11 226 11 HOH HOH . C 3 HOH A 12 227 12 HOH HOH . C 3 HOH A 13 228 13 HOH HOH . C 3 HOH A 14 229 14 HOH HOH . C 3 HOH A 15 230 15 HOH HOH . C 3 HOH A 16 231 16 HOH HOH . C 3 HOH A 17 232 17 HOH HOH . C 3 HOH A 18 233 18 HOH HOH . C 3 HOH A 19 234 19 HOH HOH . C 3 HOH A 20 235 20 HOH HOH . C 3 HOH A 21 236 21 HOH HOH . C 3 HOH A 22 237 22 HOH HOH . C 3 HOH A 23 238 23 HOH HOH . C 3 HOH A 24 239 24 HOH HOH . C 3 HOH A 25 240 25 HOH HOH . C 3 HOH A 26 241 26 HOH HOH . C 3 HOH A 27 242 27 HOH HOH . C 3 HOH A 28 243 28 HOH HOH . C 3 HOH A 29 244 29 HOH HOH . C 3 HOH A 30 245 30 HOH HOH . C 3 HOH A 31 246 31 HOH HOH . C 3 HOH A 32 247 32 HOH HOH . C 3 HOH A 33 248 33 HOH HOH . C 3 HOH A 34 249 34 HOH HOH . C 3 HOH A 35 250 35 HOH HOH . C 3 HOH A 36 251 36 HOH HOH . C 3 HOH A 37 252 37 HOH HOH . C 3 HOH A 38 253 38 HOH HOH . C 3 HOH A 39 254 39 HOH HOH . C 3 HOH A 40 255 40 HOH HOH . C 3 HOH A 41 256 41 HOH HOH . C 3 HOH A 42 257 42 HOH HOH . C 3 HOH A 43 258 43 HOH HOH . C 3 HOH A 44 259 44 HOH HOH . C 3 HOH A 45 260 45 HOH HOH . C 3 HOH A 46 261 46 HOH HOH . C 3 HOH A 47 262 47 HOH HOH . C 3 HOH A 48 263 48 HOH HOH . C 3 HOH A 49 264 49 HOH HOH . C 3 HOH A 50 265 50 HOH HOH . C 3 HOH A 51 266 51 HOH HOH . C 3 HOH A 52 267 52 HOH HOH . C 3 HOH A 53 268 53 HOH HOH . C 3 HOH A 54 269 54 HOH HOH . C 3 HOH A 55 270 55 HOH HOH . C 3 HOH A 56 271 56 HOH HOH . C 3 HOH A 57 272 57 HOH HOH . C 3 HOH A 58 273 58 HOH HOH . C 3 HOH A 59 274 59 HOH HOH . C 3 HOH A 60 275 60 HOH HOH . C 3 HOH A 61 276 61 HOH HOH . C 3 HOH A 62 277 62 HOH HOH . C 3 HOH A 63 278 63 HOH HOH . C 3 HOH A 64 279 64 HOH HOH . C 3 HOH A 65 280 65 HOH HOH . C 3 HOH A 66 281 66 HOH HOH . C 3 HOH A 67 282 67 HOH HOH . C 3 HOH A 68 283 68 HOH HOH . C 3 HOH A 69 284 69 HOH HOH . C 3 HOH A 70 285 70 HOH HOH . C 3 HOH A 71 286 71 HOH HOH . C 3 HOH A 72 287 72 HOH HOH . C 3 HOH A 73 288 73 HOH HOH . C 3 HOH A 74 289 74 HOH HOH . C 3 HOH A 75 290 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 MNB . . . B 2 -4.585 5.195 6.421 1 64.63 ? C6 MNB 215 A 1 HETATM 2 C C1 MNB . . . B 2 -5.54 4.777 5.524 1 66.14 ? C1 MNB 215 A 1 HETATM 3 C C2 MNB . . . B 2 -5.169 4.142 4.325 1 67.42 ? C2 MNB 215 A 1 HETATM 4 C C3 MNB . . . B 2 -3.802 3.928 4.016 1 65.19 ? C3 MNB 215 A 1 HETATM 5 C C4 MNB . . . B 2 -2.853 4.357 4.929 1 66.06 ? C4 MNB 215 A 1 HETATM 6 C C5 MNB . . . B 2 -3.255 4.982 6.12 1 66.89 ? C5 MNB 215 A 1 HETATM 7 S S5 MNB . . . B 2 -2.063 5.486 7.35 1 64.73 ? S5 MNB 215 A 1 HETATM 8 C C10 MNB . . . B 2 -6.991 5.056 5.946 1 66.73 ? C10 MNB 215 A 1 HETATM 9 O O12 MNB . . . B 2 -7.419 6.268 5.86 1 64.62 ? O12 MNB 215 A 1 HETATM 10 O O11 MNB . . . B 2 -7.593 4.031 6.388 1 63.04 ? O11 MNB 215 A 1 HETATM 11 N N7 MNB . . . B 2 -6.099 3.717 3.44 1 65.65 ? N7 MNB 215 A 1 HETATM 12 O O9 MNB . . . B 2 -5.712 2.964 2.279 1 62.66 ? O9 MNB 215 A 1 HETATM 13 O O8 MNB . . . B 2 -7.422 3.948 3.65 1 67.16 ? O8 MNB 215 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #