data_3QVS
#
_model_server_result.job_id            dOgrNjvWSh0VBj2KpcUxZQ 
_model_server_result.datetime_utc      '2024-12-11 22:07:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qvs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":525}' 
#
_entry.id    3QVS 
#
_exptl.entry_id    3QVS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QVS 
_cell.length_a            82.47 
_cell.length_b            89.5 
_cell.length_c            104.62 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QVS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 89.5 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 89.5 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OD2 
_struct_conn.ptnr1_label_comp_id            ASP 
_struct_conn.ptnr1_label_seq_id             329 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASP 
_struct_conn.ptnr1_auth_seq_id              329 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            G 
_struct_conn.ptnr2_label_atom_id            NA 
_struct_conn.ptnr2_label_comp_id            NA 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NA 
_struct_conn.ptnr2_auth_seq_id              525 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.512 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3QVS 
_atom_sites.fract_transf_matrix[1][1]    0.012126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011173 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 395 395 PO4 PO4 . 
C 3 NAD A 1 396 396 NAD NAD . 
D 4 PG4 A 1 399 399 PG4 PG4 . 
E 2 PO4 A 1 520 520 PO4 PO4 . 
F 5 GOL A 1 521 521 GOL GOL . 
G 6 NA A 1 525 525 NA NA . 
H 7 HOH A 1 393 1 HOH HOH . 
H 7 HOH A 2 394 2 HOH HOH . 
H 7 HOH A 3 397 3 HOH HOH . 
H 7 HOH A 4 398 4 HOH HOH . 
H 7 HOH A 5 400 6 HOH HOH . 
H 7 HOH A 6 401 7 HOH HOH . 
H 7 HOH A 7 402 8 HOH HOH . 
H 7 HOH A 8 403 9 HOH HOH . 
H 7 HOH A 9 404 10 HOH HOH . 
H 7 HOH A 10 405 11 HOH HOH . 
H 7 HOH A 11 406 12 HOH HOH . 
H 7 HOH A 12 407 13 HOH HOH . 
H 7 HOH A 13 408 14 HOH HOH . 
H 7 HOH A 14 409 15 HOH HOH . 
H 7 HOH A 15 410 16 HOH HOH . 
H 7 HOH A 16 411 17 HOH HOH . 
H 7 HOH A 17 412 18 HOH HOH . 
H 7 HOH A 18 413 19 HOH HOH . 
H 7 HOH A 19 414 20 HOH HOH . 
H 7 HOH A 20 415 21 HOH HOH . 
H 7 HOH A 21 416 22 HOH HOH . 
H 7 HOH A 22 417 23 HOH HOH . 
H 7 HOH A 23 418 24 HOH HOH . 
H 7 HOH A 24 419 25 HOH HOH . 
H 7 HOH A 25 420 26 HOH HOH . 
H 7 HOH A 26 421 27 HOH HOH . 
H 7 HOH A 27 422 28 HOH HOH . 
H 7 HOH A 28 423 29 HOH HOH . 
H 7 HOH A 29 424 30 HOH HOH . 
H 7 HOH A 30 425 31 HOH HOH . 
H 7 HOH A 31 426 32 HOH HOH . 
H 7 HOH A 32 427 33 HOH HOH . 
H 7 HOH A 33 428 34 HOH HOH . 
H 7 HOH A 34 429 35 HOH HOH . 
H 7 HOH A 35 430 36 HOH HOH . 
H 7 HOH A 36 431 37 HOH HOH . 
H 7 HOH A 37 432 38 HOH HOH . 
H 7 HOH A 38 433 39 HOH HOH . 
H 7 HOH A 39 434 40 HOH HOH . 
H 7 HOH A 40 435 41 HOH HOH . 
H 7 HOH A 41 436 42 HOH HOH . 
H 7 HOH A 42 437 43 HOH HOH . 
H 7 HOH A 43 438 44 HOH HOH . 
H 7 HOH A 44 439 45 HOH HOH . 
H 7 HOH A 45 440 46 HOH HOH . 
H 7 HOH A 46 441 47 HOH HOH . 
H 7 HOH A 47 442 49 HOH HOH . 
H 7 HOH A 48 443 50 HOH HOH . 
H 7 HOH A 49 444 51 HOH HOH . 
H 7 HOH A 50 445 52 HOH HOH . 
H 7 HOH A 51 446 53 HOH HOH . 
H 7 HOH A 52 447 54 HOH HOH . 
H 7 HOH A 53 448 55 HOH HOH . 
H 7 HOH A 54 449 56 HOH HOH . 
H 7 HOH A 55 450 57 HOH HOH . 
H 7 HOH A 56 451 58 HOH HOH . 
H 7 HOH A 57 452 59 HOH HOH . 
H 7 HOH A 58 453 60 HOH HOH . 
H 7 HOH A 59 454 61 HOH HOH . 
H 7 HOH A 60 455 62 HOH HOH . 
H 7 HOH A 61 456 63 HOH HOH . 
H 7 HOH A 62 457 64 HOH HOH . 
H 7 HOH A 63 458 65 HOH HOH . 
H 7 HOH A 64 459 66 HOH HOH . 
H 7 HOH A 65 460 67 HOH HOH . 
H 7 HOH A 66 461 68 HOH HOH . 
H 7 HOH A 67 462 69 HOH HOH . 
H 7 HOH A 68 463 70 HOH HOH . 
H 7 HOH A 69 464 71 HOH HOH . 
H 7 HOH A 70 465 72 HOH HOH . 
H 7 HOH A 71 466 73 HOH HOH . 
H 7 HOH A 72 467 74 HOH HOH . 
H 7 HOH A 73 468 75 HOH HOH . 
H 7 HOH A 74 469 76 HOH HOH . 
H 7 HOH A 75 470 77 HOH HOH . 
H 7 HOH A 76 471 78 HOH HOH . 
H 7 HOH A 77 472 79 HOH HOH . 
H 7 HOH A 78 473 80 HOH HOH . 
H 7 HOH A 79 474 81 HOH HOH . 
H 7 HOH A 80 475 82 HOH HOH . 
H 7 HOH A 81 476 83 HOH HOH . 
H 7 HOH A 82 477 84 HOH HOH . 
H 7 HOH A 83 478 85 HOH HOH . 
H 7 HOH A 84 479 86 HOH HOH . 
H 7 HOH A 85 480 87 HOH HOH . 
H 7 HOH A 86 481 88 HOH HOH . 
H 7 HOH A 87 482 89 HOH HOH . 
H 7 HOH A 88 483 90 HOH HOH . 
H 7 HOH A 89 484 91 HOH HOH . 
H 7 HOH A 90 485 92 HOH HOH . 
H 7 HOH A 91 486 93 HOH HOH . 
H 7 HOH A 92 487 94 HOH HOH . 
H 7 HOH A 93 488 95 HOH HOH . 
H 7 HOH A 94 489 96 HOH HOH . 
H 7 HOH A 95 490 97 HOH HOH . 
H 7 HOH A 96 491 98 HOH HOH . 
H 7 HOH A 97 492 99 HOH HOH . 
H 7 HOH A 98 493 100 HOH HOH . 
H 7 HOH A 99 494 101 HOH HOH . 
H 7 HOH A 100 495 102 HOH HOH . 
H 7 HOH A 101 496 103 HOH HOH . 
H 7 HOH A 102 497 104 HOH HOH . 
H 7 HOH A 103 498 105 HOH HOH . 
H 7 HOH A 104 499 106 HOH HOH . 
H 7 HOH A 105 500 107 HOH HOH . 
H 7 HOH A 106 501 108 HOH HOH . 
H 7 HOH A 107 502 109 HOH HOH . 
H 7 HOH A 108 503 110 HOH HOH . 
H 7 HOH A 109 504 111 HOH HOH . 
H 7 HOH A 110 505 112 HOH HOH . 
H 7 HOH A 111 506 113 HOH HOH . 
H 7 HOH A 112 507 114 HOH HOH . 
H 7 HOH A 113 508 115 HOH HOH . 
H 7 HOH A 114 509 116 HOH HOH . 
H 7 HOH A 115 510 117 HOH HOH . 
H 7 HOH A 116 511 118 HOH HOH . 
H 7 HOH A 117 512 119 HOH HOH . 
H 7 HOH A 118 513 120 HOH HOH . 
H 7 HOH A 119 514 121 HOH HOH . 
H 7 HOH A 120 515 122 HOH HOH . 
H 7 HOH A 121 516 123 HOH HOH . 
H 7 HOH A 122 517 124 HOH HOH . 
H 7 HOH A 123 518 125 HOH HOH . 
H 7 HOH A 124 519 126 HOH HOH . 
H 7 HOH A 125 522 127 HOH HOH . 
H 7 HOH A 126 523 128 HOH HOH . 
H 7 HOH A 127 524 129 HOH HOH . 
H 7 HOH A 128 526 130 HOH HOH . 
H 7 HOH A 129 527 131 HOH HOH . 
H 7 HOH A 130 528 133 HOH HOH . 
H 7 HOH A 131 529 134 HOH HOH . 
H 7 HOH A 132 530 135 HOH HOH . 
H 7 HOH A 133 531 136 HOH HOH . 
H 7 HOH A 134 532 137 HOH HOH . 
H 7 HOH A 135 533 138 HOH HOH . 
H 7 HOH A 136 534 139 HOH HOH . 
H 7 HOH A 137 535 140 HOH HOH . 
H 7 HOH A 138 536 141 HOH HOH . 
H 7 HOH A 139 537 142 HOH HOH . 
H 7 HOH A 140 538 143 HOH HOH . 
H 7 HOH A 141 539 144 HOH HOH . 
H 7 HOH A 142 540 145 HOH HOH . 
H 7 HOH A 143 541 146 HOH HOH . 
H 7 HOH A 144 542 147 HOH HOH . 
H 7 HOH A 145 543 148 HOH HOH . 
H 7 HOH A 146 544 149 HOH HOH . 
H 7 HOH A 147 545 150 HOH HOH . 
H 7 HOH A 148 546 151 HOH HOH . 
H 7 HOH A 149 547 152 HOH HOH . 
H 7 HOH A 150 548 153 HOH HOH . 
H 7 HOH A 151 549 154 HOH HOH . 
H 7 HOH A 152 550 155 HOH HOH . 
H 7 HOH A 153 551 156 HOH HOH . 
H 7 HOH A 154 552 157 HOH HOH . 
H 7 HOH A 155 553 158 HOH HOH . 
H 7 HOH A 156 554 159 HOH HOH . 
H 7 HOH A 157 555 160 HOH HOH . 
H 7 HOH A 158 556 161 HOH HOH . 
H 7 HOH A 159 557 162 HOH HOH . 
H 7 HOH A 160 558 163 HOH HOH . 
H 7 HOH A 161 559 164 HOH HOH . 
H 7 HOH A 162 560 165 HOH HOH . 
H 7 HOH A 163 561 166 HOH HOH . 
H 7 HOH A 164 562 167 HOH HOH . 
H 7 HOH A 165 563 168 HOH HOH . 
H 7 HOH A 166 564 169 HOH HOH . 
H 7 HOH A 167 565 170 HOH HOH . 
H 7 HOH A 168 566 171 HOH HOH . 
H 7 HOH A 169 567 172 HOH HOH . 
H 7 HOH A 170 568 173 HOH HOH . 
H 7 HOH A 171 569 174 HOH HOH . 
H 7 HOH A 172 570 175 HOH HOH . 
H 7 HOH A 173 571 176 HOH HOH . 
H 7 HOH A 174 572 177 HOH HOH . 
H 7 HOH A 175 573 178 HOH HOH . 
H 7 HOH A 176 574 179 HOH HOH . 
H 7 HOH A 177 575 180 HOH HOH . 
H 7 HOH A 178 576 181 HOH HOH . 
H 7 HOH A 179 577 182 HOH HOH . 
H 7 HOH A 180 578 183 HOH HOH . 
H 7 HOH A 181 579 184 HOH HOH . 
H 7 HOH A 182 580 185 HOH HOH . 
H 7 HOH A 183 581 186 HOH HOH . 
H 7 HOH A 184 582 187 HOH HOH . 
H 7 HOH A 185 583 188 HOH HOH . 
H 7 HOH A 186 584 189 HOH HOH . 
H 7 HOH A 187 585 190 HOH HOH . 
H 7 HOH A 188 586 191 HOH HOH . 
H 7 HOH A 189 587 192 HOH HOH . 
H 7 HOH A 190 588 193 HOH HOH . 
H 7 HOH A 191 589 194 HOH HOH . 
H 7 HOH A 192 590 195 HOH HOH . 
H 7 HOH A 193 591 196 HOH HOH . 
H 7 HOH A 194 592 197 HOH HOH . 
H 7 HOH A 195 593 198 HOH HOH . 
H 7 HOH A 196 594 199 HOH HOH . 
H 7 HOH A 197 595 200 HOH HOH . 
H 7 HOH A 198 596 201 HOH HOH . 
H 7 HOH A 199 597 202 HOH HOH . 
H 7 HOH A 200 598 203 HOH HOH . 
H 7 HOH A 201 599 204 HOH HOH . 
H 7 HOH A 202 600 205 HOH HOH . 
H 7 HOH A 203 601 206 HOH HOH . 
H 7 HOH A 204 602 207 HOH HOH . 
H 7 HOH A 205 603 208 HOH HOH . 
H 7 HOH A 206 604 209 HOH HOH . 
H 7 HOH A 207 605 210 HOH HOH . 
H 7 HOH A 208 606 211 HOH HOH . 
H 7 HOH A 209 607 212 HOH HOH . 
H 7 HOH A 210 608 213 HOH HOH . 
H 7 HOH A 211 609 214 HOH HOH . 
H 7 HOH A 212 610 215 HOH HOH . 
H 7 HOH A 213 611 216 HOH HOH . 
H 7 HOH A 214 612 217 HOH HOH . 
H 7 HOH A 215 613 218 HOH HOH . 
H 7 HOH A 216 614 219 HOH HOH . 
H 7 HOH A 217 615 220 HOH HOH . 
H 7 HOH A 218 616 221 HOH HOH . 
H 7 HOH A 219 617 222 HOH HOH . 
H 7 HOH A 220 618 223 HOH HOH . 
H 7 HOH A 221 619 224 HOH HOH . 
H 7 HOH A 222 620 225 HOH HOH . 
H 7 HOH A 223 621 226 HOH HOH . 
H 7 HOH A 224 622 227 HOH HOH . 
H 7 HOH A 225 623 228 HOH HOH . 
H 7 HOH A 226 624 229 HOH HOH . 
H 7 HOH A 227 625 230 HOH HOH . 
H 7 HOH A 228 626 231 HOH HOH . 
H 7 HOH A 229 627 232 HOH HOH . 
H 7 HOH A 230 628 233 HOH HOH . 
H 7 HOH A 231 629 234 HOH HOH . 
H 7 HOH A 232 630 235 HOH HOH . 
H 7 HOH A 233 631 236 HOH HOH . 
H 7 HOH A 234 632 237 HOH HOH . 
H 7 HOH A 235 633 238 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               0.004 
_atom_site.Cartn_y               35.048 
_atom_site.Cartn_z               0.001 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        26.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           525 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#