data_3QVU # _model_server_result.job_id '_ecFZd44MwC2x_rK-T6XUw' _model_server_result.datetime_utc '2024-11-08 18:05:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":297}' # _entry.id 3QVU # _exptl.entry_id 3QVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.109 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description P-NITROPHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QVU _cell.length_a 66.86 _cell.length_b 71.54 _cell.length_c 122.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C6 H5 N O3' _chem_comp.formula_weight 139.109 _chem_comp.id NPO _chem_comp.mon_nstd_flag . _chem_comp.name P-NITROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NPO doub 290 n y C1 C6 NPO sing 291 n y C1 N1 NPO sing 292 n n C2 C3 NPO sing 293 n y C2 H2 NPO sing 294 n n C3 C4 NPO doub 295 n y C3 H3 NPO sing 296 n n C4 C5 NPO sing 297 n y C4 OH NPO sing 298 n n C5 C6 NPO doub 299 n y C5 H5 NPO sing 300 n n C6 H6 NPO sing 301 n n OH HO NPO sing 302 n n N1 O2 NPO sing 303 n n N1 O3 NPO doub 304 n n # _atom_sites.entry_id 3QVU _atom_sites.fract_transf_matrix[1][1] 0.014957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NPO A 1 296 1 NPO NPO . D 3 EDO A 1 297 1 EDO EDO . E 4 A3P A 1 2001 2001 A3P A3P . F 3 EDO B 1 296 1 EDO EDO . G 4 A3P B 1 2001 2001 A3P A3P . H 2 NPO B 1 297 1 NPO NPO . I 5 HOH A 1 298 6 HOH HOH . I 5 HOH A 2 299 9 HOH HOH . I 5 HOH A 3 300 10 HOH HOH . I 5 HOH A 4 301 11 HOH HOH . I 5 HOH A 5 302 15 HOH HOH . I 5 HOH A 6 303 21 HOH HOH . I 5 HOH A 7 304 22 HOH HOH . I 5 HOH A 8 305 24 HOH HOH . I 5 HOH A 9 306 26 HOH HOH . I 5 HOH A 10 307 32 HOH HOH . I 5 HOH A 11 308 34 HOH HOH . I 5 HOH A 12 309 36 HOH HOH . I 5 HOH A 13 310 46 HOH HOH . I 5 HOH A 14 311 47 HOH HOH . I 5 HOH A 15 312 48 HOH HOH . I 5 HOH A 16 313 49 HOH HOH . I 5 HOH A 17 314 50 HOH HOH . I 5 HOH A 18 315 51 HOH HOH . I 5 HOH A 19 316 52 HOH HOH . I 5 HOH A 20 317 56 HOH HOH . I 5 HOH A 21 318 57 HOH HOH . I 5 HOH A 22 319 60 HOH HOH . I 5 HOH A 23 320 63 HOH HOH . I 5 HOH A 24 321 64 HOH HOH . I 5 HOH A 25 322 65 HOH HOH . I 5 HOH A 26 323 72 HOH HOH . I 5 HOH A 27 324 73 HOH HOH . I 5 HOH A 28 325 76 HOH HOH . I 5 HOH A 29 326 80 HOH HOH . I 5 HOH A 30 327 81 HOH HOH . I 5 HOH A 31 328 82 HOH HOH . I 5 HOH A 32 329 85 HOH HOH . I 5 HOH A 33 330 86 HOH HOH . I 5 HOH A 34 331 89 HOH HOH . I 5 HOH A 35 332 90 HOH HOH . I 5 HOH A 36 333 91 HOH HOH . I 5 HOH A 37 334 93 HOH HOH . I 5 HOH A 38 335 94 HOH HOH . I 5 HOH A 39 336 95 HOH HOH . I 5 HOH A 40 337 97 HOH HOH . J 5 HOH B 1 298 2 HOH HOH . J 5 HOH B 2 299 3 HOH HOH . J 5 HOH B 3 300 4 HOH HOH . J 5 HOH B 4 301 7 HOH HOH . J 5 HOH B 5 302 8 HOH HOH . J 5 HOH B 6 303 12 HOH HOH . J 5 HOH B 7 304 13 HOH HOH . J 5 HOH B 8 305 14 HOH HOH . J 5 HOH B 9 306 16 HOH HOH . J 5 HOH B 10 307 17 HOH HOH . J 5 HOH B 11 308 18 HOH HOH . J 5 HOH B 12 309 19 HOH HOH . J 5 HOH B 13 310 20 HOH HOH . J 5 HOH B 14 311 23 HOH HOH . J 5 HOH B 15 312 25 HOH HOH . J 5 HOH B 16 313 27 HOH HOH . J 5 HOH B 17 314 29 HOH HOH . J 5 HOH B 18 315 35 HOH HOH . J 5 HOH B 19 316 37 HOH HOH . J 5 HOH B 20 317 38 HOH HOH . J 5 HOH B 21 318 39 HOH HOH . J 5 HOH B 22 319 40 HOH HOH . J 5 HOH B 23 320 41 HOH HOH . J 5 HOH B 24 321 42 HOH HOH . J 5 HOH B 25 322 43 HOH HOH . J 5 HOH B 26 323 45 HOH HOH . J 5 HOH B 27 324 53 HOH HOH . J 5 HOH B 28 325 54 HOH HOH . J 5 HOH B 29 326 55 HOH HOH . J 5 HOH B 30 327 61 HOH HOH . J 5 HOH B 31 328 62 HOH HOH . J 5 HOH B 32 329 66 HOH HOH . J 5 HOH B 33 330 67 HOH HOH . J 5 HOH B 34 331 68 HOH HOH . J 5 HOH B 35 332 69 HOH HOH . J 5 HOH B 36 333 70 HOH HOH . J 5 HOH B 37 334 71 HOH HOH . J 5 HOH B 38 335 74 HOH HOH . J 5 HOH B 39 336 75 HOH HOH . J 5 HOH B 40 337 77 HOH HOH . J 5 HOH B 41 338 78 HOH HOH . J 5 HOH B 42 339 79 HOH HOH . J 5 HOH B 43 340 83 HOH HOH . J 5 HOH B 44 341 84 HOH HOH . J 5 HOH B 45 342 87 HOH HOH . J 5 HOH B 46 343 92 HOH HOH . J 5 HOH B 47 344 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPO . . . H 2 6.404 -0.17 -32.702 1 33.43 ? C1 NPO 297 B 1 HETATM 2 C C2 NPO . . . H 2 6.83 1.064 -32.224 1 32.29 ? C2 NPO 297 B 1 HETATM 3 C C3 NPO . . . H 2 8.184 1.374 -32.214 1 33.05 ? C3 NPO 297 B 1 HETATM 4 C C4 NPO . . . H 2 9.112 0.451 -32.683 1 31.4 ? C4 NPO 297 B 1 HETATM 5 C C5 NPO . . . H 2 8.687 -0.783 -33.163 1 29.98 ? C5 NPO 297 B 1 HETATM 6 C C6 NPO . . . H 2 7.332 -1.093 -33.171 1 31.95 ? C6 NPO 297 B 1 HETATM 7 O OH NPO . . . H 2 10.438 0.76 -32.673 1 27.77 ? OH NPO 297 B 1 HETATM 8 N N1 NPO . . . H 2 5.039 -0.483 -32.709 1 36.09 ? N1 NPO 297 B 1 HETATM 9 O O2 NPO . . . H 2 4.67 -1.584 -33.082 1 37.56 ? O2 NPO 297 B 1 HETATM 10 O O3 NPO . . . H 2 4.218 0.344 -32.343 1 36.58 ? O3 NPO 297 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #