data_3QVV # _model_server_result.job_id QSrYdlHrFLen2jWPuiMyHg _model_server_result.datetime_utc '2024-11-29 06:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 3QVV # _exptl.entry_id 3QVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QVV _cell.length_a 71.79 _cell.length_b 71.91 _cell.length_c 122.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 21 n n P1 O2P A3P sing 22 n n P1 O3P A3P sing 23 n n P1 O3' A3P sing 24 n n O2P HOP2 A3P sing 25 n n O3P HOP3 A3P sing 26 n n P2 O4P A3P doub 27 n n P2 O5P A3P sing 28 n n P2 O6P A3P sing 29 n n P2 O5' A3P sing 30 n n O5P HOP5 A3P sing 31 n n O6P HOP6 A3P sing 32 n n O5' C5' A3P sing 33 n n C5' C4' A3P sing 34 n n C5' "H5'1" A3P sing 35 n n C5' "H5'2" A3P sing 36 n n C4' O4' A3P sing 37 n n C4' C3' A3P sing 38 n n C4' H4' A3P sing 39 n n O4' C1' A3P sing 40 n n C3' O3' A3P sing 41 n n C3' C2' A3P sing 42 n n C3' H3' A3P sing 43 n n C2' O2' A3P sing 44 n n C2' C1' A3P sing 45 n n C2' H2' A3P sing 46 n n O2' HO2' A3P sing 47 n n C1' N9 A3P sing 48 n n C1' H1' A3P sing 49 n n N9 C8 A3P sing 50 n y N9 C4 A3P sing 51 n y C8 N7 A3P doub 52 n y C8 H8 A3P sing 53 n n N7 C5 A3P sing 54 n y C5 C6 A3P sing 55 n y C5 C4 A3P doub 56 n y C6 N6 A3P sing 57 n n C6 N1 A3P doub 58 n y N6 HN61 A3P sing 59 n n N6 HN62 A3P sing 60 n n N1 C2 A3P sing 61 n y C2 N3 A3P doub 62 n y C2 H2 A3P sing 63 n n N3 C4 A3P sing 64 n y # _atom_sites.entry_id 3QVV _atom_sites.fract_transf_matrix[1][1] 0.01393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A3P A 1 2001 2001 A3P A3P . D 3 3QV A 1 296 2 3QV 3QV . E 2 A3P B 1 2001 2001 A3P A3P . F 3 3QV B 1 296 2 3QV 3QV . G 4 HOH A 1 297 6 HOH HOH . G 4 HOH A 2 298 16 HOH HOH . G 4 HOH A 3 299 24 HOH HOH . G 4 HOH A 4 300 31 HOH HOH . G 4 HOH A 5 301 37 HOH HOH . G 4 HOH A 6 302 61 HOH HOH . G 4 HOH A 7 303 70 HOH HOH . G 4 HOH A 8 304 74 HOH HOH . G 4 HOH A 9 305 139 HOH HOH . G 4 HOH A 10 306 140 HOH HOH . G 4 HOH A 11 307 265 HOH HOH . G 4 HOH A 12 308 266 HOH HOH . G 4 HOH A 13 309 271 HOH HOH . G 4 HOH A 14 310 272 HOH HOH . G 4 HOH A 15 311 273 HOH HOH . G 4 HOH A 16 312 274 HOH HOH . G 4 HOH A 17 313 275 HOH HOH . H 4 HOH B 1 297 1 HOH HOH . H 4 HOH B 2 298 4 HOH HOH . H 4 HOH B 3 299 8 HOH HOH . H 4 HOH B 4 300 9 HOH HOH . H 4 HOH B 5 301 18 HOH HOH . H 4 HOH B 6 302 22 HOH HOH . H 4 HOH B 7 303 45 HOH HOH . H 4 HOH B 8 304 47 HOH HOH . H 4 HOH B 9 305 48 HOH HOH . H 4 HOH B 10 306 115 HOH HOH . H 4 HOH B 11 307 137 HOH HOH . H 4 HOH B 12 308 194 HOH HOH . H 4 HOH B 13 309 253 HOH HOH . H 4 HOH B 14 310 256 HOH HOH . H 4 HOH B 15 311 258 HOH HOH . H 4 HOH B 16 312 264 HOH HOH . H 4 HOH B 17 313 267 HOH HOH . H 4 HOH B 18 314 268 HOH HOH . H 4 HOH B 19 315 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . E 2 34.962 52.054 23.978 1 59.78 ? P1 A3P 2001 B 1 HETATM 2 O O1P A3P . . . E 2 35.861 51.007 23.368 1 58.42 ? O1P A3P 2001 B 1 HETATM 3 O O2P A3P . . . E 2 34 51.506 25.003 1 64.67 ? O2P A3P 2001 B 1 HETATM 4 O O3P A3P . . . E 2 35.648 53.327 24.401 1 59.98 ? O3P A3P 2001 B 1 HETATM 5 P P2 A3P . . . E 2 31.715 51.954 17.125 1 58.7 ? P2 A3P 2001 B 1 HETATM 6 O O4P A3P . . . E 2 32.491 50.665 17.057 1 62.2 ? O4P A3P 2001 B 1 HETATM 7 O O5P A3P . . . E 2 30.217 51.778 17.164 1 66.74 ? O5P A3P 2001 B 1 HETATM 8 O O6P A3P . . . E 2 32.194 53.039 16.195 1 62.65 ? O6P A3P 2001 B 1 HETATM 9 O O5' A3P . . . E 2 32.057 52.535 18.573 1 59.91 ? O5' A3P 2001 B 1 HETATM 10 C C5' A3P . . . E 2 32.328 51.668 19.664 1 60.34 ? C5' A3P 2001 B 1 HETATM 11 C C4' A3P . . . E 2 32.724 52.556 20.828 1 63.37 ? C4' A3P 2001 B 1 HETATM 12 O O4' A3P . . . E 2 31.603 53.361 21.213 1 64.2 ? O4' A3P 2001 B 1 HETATM 13 C C3' A3P . . . E 2 33.116 51.746 22.047 1 63.72 ? C3' A3P 2001 B 1 HETATM 14 O O3' A3P . . . E 2 34.039 52.563 22.762 1 63.47 ? O3' A3P 2001 B 1 HETATM 15 C C2' A3P . . . E 2 31.807 51.642 22.79 1 63.75 ? C2' A3P 2001 B 1 HETATM 16 O O2' A3P . . . E 2 31.996 51.375 24.18 1 64.21 ? O2' A3P 2001 B 1 HETATM 17 C C1' A3P . . . E 2 31.222 53.024 22.549 1 65.33 ? C1' A3P 2001 B 1 HETATM 18 N N9 A3P . . . E 2 29.751 53.055 22.738 1 65.12 ? N9 A3P 2001 B 1 HETATM 19 C C8 A3P . . . E 2 28.856 52.161 22.279 1 64.88 ? C8 A3P 2001 B 1 HETATM 20 N N7 A3P . . . E 2 27.596 52.505 22.648 1 64.63 ? N7 A3P 2001 B 1 HETATM 21 C C5 A3P . . . E 2 27.681 53.641 23.362 1 65.82 ? C5 A3P 2001 B 1 HETATM 22 C C6 A3P . . . E 2 26.735 54.547 24.052 1 65.78 ? C6 A3P 2001 B 1 HETATM 23 N N6 A3P . . . E 2 25.406 54.296 24.05 1 64.75 ? N6 A3P 2001 B 1 HETATM 24 N N1 A3P . . . E 2 27.244 55.631 24.679 1 67.63 ? N1 A3P 2001 B 1 HETATM 25 C C2 A3P . . . E 2 28.565 55.894 24.689 1 67.48 ? C2 A3P 2001 B 1 HETATM 26 N N3 A3P . . . E 2 29.477 55.116 24.082 1 66.98 ? N3 A3P 2001 B 1 HETATM 27 C C4 A3P . . . E 2 29.104 53.997 23.417 1 65.13 ? C4 A3P 2001 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #