data_3QVX
#
_model_server_result.job_id            Mkjc2U06FSIOYUFzaICK6g 
_model_server_result.datetime_utc      '2024-12-12 14:17:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qvx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":403}' 
#
_entry.id    3QVX 
#
_exptl.entry_id    3QVX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QVX 
_cell.length_a            82.07 
_cell.length_b            89.28 
_cell.length_c            104.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QVX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 89.28 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 89.28 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OD2 
_struct_conn.ptnr1_label_comp_id            ASP 
_struct_conn.ptnr1_label_seq_id             329 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASP 
_struct_conn.ptnr1_auth_seq_id              329 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            K 
_struct_conn.ptnr2_label_atom_id            NA 
_struct_conn.ptnr2_label_comp_id            NA 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NA 
_struct_conn.ptnr2_auth_seq_id              410 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.615 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3QVX 
_atom_sites.fract_transf_matrix[1][1]    0.012185 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011201 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009527 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 393 393 PO4 PO4 . 
C 3 SO4 A 1 394 394 SO4 SO4 . 
D 3 SO4 A 1 395 395 SO4 SO4 . 
E 4 NAD A 1 396 396 NAD NAD . 
F 5 GOL A 1 397 397 GOL GOL . 
G 5 GOL A 1 398 398 GOL GOL . 
H 5 GOL A 1 403 403 GOL GOL . 
I 5 GOL A 1 404 404 GOL GOL . 
J 6 PG4 A 1 399 399 PG4 PG4 . 
K 7 NA A 1 410 410 NA NA . 
L 8 HOH A 1 400 400 HOH HOH . 
L 8 HOH A 2 401 401 HOH HOH . 
L 8 HOH A 3 402 402 HOH HOH . 
L 8 HOH A 4 405 1 HOH HOH . 
L 8 HOH A 5 406 2 HOH HOH . 
L 8 HOH A 6 407 3 HOH HOH . 
L 8 HOH A 7 408 4 HOH HOH . 
L 8 HOH A 8 409 5 HOH HOH . 
L 8 HOH A 9 411 7 HOH HOH . 
L 8 HOH A 10 412 8 HOH HOH . 
L 8 HOH A 11 413 9 HOH HOH . 
L 8 HOH A 12 414 10 HOH HOH . 
L 8 HOH A 13 415 11 HOH HOH . 
L 8 HOH A 14 416 13 HOH HOH . 
L 8 HOH A 15 417 14 HOH HOH . 
L 8 HOH A 16 418 15 HOH HOH . 
L 8 HOH A 17 419 16 HOH HOH . 
L 8 HOH A 18 420 17 HOH HOH . 
L 8 HOH A 19 421 18 HOH HOH . 
L 8 HOH A 20 422 20 HOH HOH . 
L 8 HOH A 21 423 21 HOH HOH . 
L 8 HOH A 22 424 22 HOH HOH . 
L 8 HOH A 23 425 23 HOH HOH . 
L 8 HOH A 24 426 24 HOH HOH . 
L 8 HOH A 25 427 25 HOH HOH . 
L 8 HOH A 26 428 26 HOH HOH . 
L 8 HOH A 27 429 27 HOH HOH . 
L 8 HOH A 28 430 28 HOH HOH . 
L 8 HOH A 29 431 29 HOH HOH . 
L 8 HOH A 30 432 30 HOH HOH . 
L 8 HOH A 31 433 31 HOH HOH . 
L 8 HOH A 32 434 32 HOH HOH . 
L 8 HOH A 33 435 34 HOH HOH . 
L 8 HOH A 34 436 35 HOH HOH . 
L 8 HOH A 35 437 36 HOH HOH . 
L 8 HOH A 36 438 37 HOH HOH . 
L 8 HOH A 37 439 38 HOH HOH . 
L 8 HOH A 38 440 39 HOH HOH . 
L 8 HOH A 39 441 40 HOH HOH . 
L 8 HOH A 40 442 41 HOH HOH . 
L 8 HOH A 41 443 42 HOH HOH . 
L 8 HOH A 42 444 43 HOH HOH . 
L 8 HOH A 43 445 44 HOH HOH . 
L 8 HOH A 44 446 45 HOH HOH . 
L 8 HOH A 45 447 46 HOH HOH . 
L 8 HOH A 46 448 47 HOH HOH . 
L 8 HOH A 47 449 49 HOH HOH . 
L 8 HOH A 48 450 50 HOH HOH . 
L 8 HOH A 49 451 51 HOH HOH . 
L 8 HOH A 50 452 52 HOH HOH . 
L 8 HOH A 51 453 53 HOH HOH . 
L 8 HOH A 52 454 54 HOH HOH . 
L 8 HOH A 53 455 55 HOH HOH . 
L 8 HOH A 54 456 56 HOH HOH . 
L 8 HOH A 55 457 57 HOH HOH . 
L 8 HOH A 56 458 58 HOH HOH . 
L 8 HOH A 57 459 59 HOH HOH . 
L 8 HOH A 58 460 60 HOH HOH . 
L 8 HOH A 59 461 61 HOH HOH . 
L 8 HOH A 60 462 62 HOH HOH . 
L 8 HOH A 61 463 63 HOH HOH . 
L 8 HOH A 62 464 64 HOH HOH . 
L 8 HOH A 63 465 65 HOH HOH . 
L 8 HOH A 64 466 66 HOH HOH . 
L 8 HOH A 65 467 67 HOH HOH . 
L 8 HOH A 66 468 68 HOH HOH . 
L 8 HOH A 67 469 69 HOH HOH . 
L 8 HOH A 68 470 70 HOH HOH . 
L 8 HOH A 69 471 71 HOH HOH . 
L 8 HOH A 70 472 72 HOH HOH . 
L 8 HOH A 71 473 73 HOH HOH . 
L 8 HOH A 72 474 74 HOH HOH . 
L 8 HOH A 73 475 75 HOH HOH . 
L 8 HOH A 74 476 76 HOH HOH . 
L 8 HOH A 75 477 77 HOH HOH . 
L 8 HOH A 76 478 78 HOH HOH . 
L 8 HOH A 77 479 79 HOH HOH . 
L 8 HOH A 78 480 80 HOH HOH . 
L 8 HOH A 79 481 81 HOH HOH . 
L 8 HOH A 80 482 82 HOH HOH . 
L 8 HOH A 81 483 83 HOH HOH . 
L 8 HOH A 82 484 84 HOH HOH . 
L 8 HOH A 83 485 85 HOH HOH . 
L 8 HOH A 84 486 86 HOH HOH . 
L 8 HOH A 85 487 87 HOH HOH . 
L 8 HOH A 86 488 88 HOH HOH . 
L 8 HOH A 87 489 89 HOH HOH . 
L 8 HOH A 88 490 90 HOH HOH . 
L 8 HOH A 89 491 91 HOH HOH . 
L 8 HOH A 90 492 92 HOH HOH . 
L 8 HOH A 91 493 93 HOH HOH . 
L 8 HOH A 92 494 94 HOH HOH . 
L 8 HOH A 93 495 95 HOH HOH . 
L 8 HOH A 94 496 96 HOH HOH . 
L 8 HOH A 95 497 97 HOH HOH . 
L 8 HOH A 96 498 98 HOH HOH . 
L 8 HOH A 97 499 99 HOH HOH . 
L 8 HOH A 98 500 100 HOH HOH . 
L 8 HOH A 99 501 101 HOH HOH . 
L 8 HOH A 100 502 102 HOH HOH . 
L 8 HOH A 101 503 103 HOH HOH . 
L 8 HOH A 102 504 104 HOH HOH . 
L 8 HOH A 103 505 105 HOH HOH . 
L 8 HOH A 104 506 106 HOH HOH . 
L 8 HOH A 105 507 107 HOH HOH . 
L 8 HOH A 106 508 108 HOH HOH . 
L 8 HOH A 107 509 109 HOH HOH . 
L 8 HOH A 108 510 110 HOH HOH . 
L 8 HOH A 109 511 111 HOH HOH . 
L 8 HOH A 110 512 112 HOH HOH . 
L 8 HOH A 111 513 113 HOH HOH . 
L 8 HOH A 112 514 114 HOH HOH . 
L 8 HOH A 113 515 115 HOH HOH . 
L 8 HOH A 114 516 116 HOH HOH . 
L 8 HOH A 115 517 117 HOH HOH . 
L 8 HOH A 116 518 118 HOH HOH . 
L 8 HOH A 117 519 119 HOH HOH . 
L 8 HOH A 118 520 120 HOH HOH . 
L 8 HOH A 119 521 121 HOH HOH . 
L 8 HOH A 120 522 122 HOH HOH . 
L 8 HOH A 121 523 123 HOH HOH . 
L 8 HOH A 122 524 124 HOH HOH . 
L 8 HOH A 123 525 125 HOH HOH . 
L 8 HOH A 124 526 126 HOH HOH . 
L 8 HOH A 125 527 127 HOH HOH . 
L 8 HOH A 126 528 128 HOH HOH . 
L 8 HOH A 127 529 129 HOH HOH . 
L 8 HOH A 128 530 130 HOH HOH . 
L 8 HOH A 129 531 131 HOH HOH . 
L 8 HOH A 130 532 133 HOH HOH . 
L 8 HOH A 131 533 134 HOH HOH . 
L 8 HOH A 132 534 135 HOH HOH . 
L 8 HOH A 133 535 136 HOH HOH . 
L 8 HOH A 134 536 137 HOH HOH . 
L 8 HOH A 135 537 138 HOH HOH . 
L 8 HOH A 136 538 139 HOH HOH . 
L 8 HOH A 137 539 140 HOH HOH . 
L 8 HOH A 138 540 141 HOH HOH . 
L 8 HOH A 139 541 142 HOH HOH . 
L 8 HOH A 140 542 143 HOH HOH . 
L 8 HOH A 141 543 144 HOH HOH . 
L 8 HOH A 142 544 145 HOH HOH . 
L 8 HOH A 143 545 146 HOH HOH . 
L 8 HOH A 144 546 147 HOH HOH . 
L 8 HOH A 145 547 148 HOH HOH . 
L 8 HOH A 146 548 149 HOH HOH . 
L 8 HOH A 147 549 150 HOH HOH . 
L 8 HOH A 148 550 151 HOH HOH . 
L 8 HOH A 149 551 152 HOH HOH . 
L 8 HOH A 150 552 153 HOH HOH . 
L 8 HOH A 151 553 154 HOH HOH . 
L 8 HOH A 152 554 155 HOH HOH . 
L 8 HOH A 153 555 156 HOH HOH . 
L 8 HOH A 154 556 158 HOH HOH . 
L 8 HOH A 155 557 159 HOH HOH . 
L 8 HOH A 156 558 160 HOH HOH . 
L 8 HOH A 157 559 161 HOH HOH . 
L 8 HOH A 158 560 162 HOH HOH . 
L 8 HOH A 159 561 163 HOH HOH . 
L 8 HOH A 160 562 164 HOH HOH . 
L 8 HOH A 161 563 165 HOH HOH . 
L 8 HOH A 162 564 166 HOH HOH . 
L 8 HOH A 163 565 167 HOH HOH . 
L 8 HOH A 164 566 168 HOH HOH . 
L 8 HOH A 165 567 169 HOH HOH . 
L 8 HOH A 166 568 170 HOH HOH . 
L 8 HOH A 167 569 171 HOH HOH . 
L 8 HOH A 168 570 172 HOH HOH . 
L 8 HOH A 169 571 173 HOH HOH . 
L 8 HOH A 170 572 174 HOH HOH . 
L 8 HOH A 171 573 175 HOH HOH . 
L 8 HOH A 172 574 176 HOH HOH . 
L 8 HOH A 173 575 177 HOH HOH . 
L 8 HOH A 174 576 178 HOH HOH . 
L 8 HOH A 175 577 179 HOH HOH . 
L 8 HOH A 176 578 180 HOH HOH . 
L 8 HOH A 177 579 181 HOH HOH . 
L 8 HOH A 178 580 182 HOH HOH . 
L 8 HOH A 179 581 183 HOH HOH . 
L 8 HOH A 180 582 184 HOH HOH . 
L 8 HOH A 181 583 185 HOH HOH . 
L 8 HOH A 182 584 186 HOH HOH . 
L 8 HOH A 183 585 187 HOH HOH . 
L 8 HOH A 184 586 189 HOH HOH . 
L 8 HOH A 185 587 190 HOH HOH . 
L 8 HOH A 186 588 191 HOH HOH . 
L 8 HOH A 187 589 192 HOH HOH . 
L 8 HOH A 188 590 193 HOH HOH . 
L 8 HOH A 189 591 194 HOH HOH . 
L 8 HOH A 190 592 195 HOH HOH . 
L 8 HOH A 191 593 196 HOH HOH . 
L 8 HOH A 192 594 197 HOH HOH . 
L 8 HOH A 193 595 198 HOH HOH . 
L 8 HOH A 194 596 199 HOH HOH . 
L 8 HOH A 195 597 200 HOH HOH . 
L 8 HOH A 196 598 201 HOH HOH . 
L 8 HOH A 197 599 202 HOH HOH . 
L 8 HOH A 198 600 203 HOH HOH . 
L 8 HOH A 199 601 204 HOH HOH . 
L 8 HOH A 200 602 205 HOH HOH . 
L 8 HOH A 201 603 206 HOH HOH . 
L 8 HOH A 202 604 207 HOH HOH . 
L 8 HOH A 203 605 208 HOH HOH . 
L 8 HOH A 204 606 209 HOH HOH . 
L 8 HOH A 205 607 210 HOH HOH . 
L 8 HOH A 206 608 211 HOH HOH . 
L 8 HOH A 207 609 212 HOH HOH . 
L 8 HOH A 208 610 213 HOH HOH . 
L 8 HOH A 209 611 214 HOH HOH . 
L 8 HOH A 210 612 215 HOH HOH . 
L 8 HOH A 211 613 216 HOH HOH . 
L 8 HOH A 212 614 217 HOH HOH . 
L 8 HOH A 213 615 218 HOH HOH . 
L 8 HOH A 214 616 219 HOH HOH . 
L 8 HOH A 215 617 220 HOH HOH . 
L 8 HOH A 216 618 221 HOH HOH . 
L 8 HOH A 217 619 222 HOH HOH . 
L 8 HOH A 218 620 223 HOH HOH . 
L 8 HOH A 219 621 224 HOH HOH . 
L 8 HOH A 220 622 225 HOH HOH . 
L 8 HOH A 221 623 226 HOH HOH . 
L 8 HOH A 222 624 227 HOH HOH . 
L 8 HOH A 223 625 228 HOH HOH . 
L 8 HOH A 224 626 229 HOH HOH . 
L 8 HOH A 225 627 230 HOH HOH . 
L 8 HOH A 226 628 231 HOH HOH . 
L 8 HOH A 227 629 232 HOH HOH . 
L 8 HOH A 228 630 233 HOH HOH . 
L 8 HOH A 229 631 234 HOH HOH . 
L 8 HOH A 230 632 235 HOH HOH . 
L 8 HOH A 231 633 236 HOH HOH . 
L 8 HOH A 232 634 237 HOH HOH . 
L 8 HOH A 233 635 238 HOH HOH . 
L 8 HOH A 234 636 239 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 5 3.436 30.388 -0.12 1 36.93 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . H 5 2.835 29.773 -1.216 1 39.15 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . H 5 3.302 29.468 1.075 1 37.64 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . H 5 4.497 29.614 1.793 1 38.04 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . H 5 2.147 29.975 1.908 1 37.03 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . H 5 1.576 28.884 2.603 1 45.43 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           501 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#