data_3QVZ # _model_server_result.job_id aPvouT1QIRu-AklwtHBdbA _model_server_result.datetime_utc '2024-11-06 11:33:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 3QVZ # _exptl.entry_id 3QVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.182 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QVZ _cell.length_a 52.525 _cell.length_b 52.525 _cell.length_c 255.717 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 82 A CYS 82 1_555 F CAE ME7 . A ME7 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale2 A SG CYS 98 A CYS 98 1_555 E CAB HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale3 A SG CYS 101 A CYS 101 1_555 E CAC HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? covale ? covale4 F CAH ME7 . A ME7 501 1_555 C SG CYS 82 C CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? covale ? covale5 B SG CYS 82 B CYS 82 1_555 N CAG ME7 . B ME7 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? covale ? covale6 B SG CYS 98 B CYS 98 1_555 M CAB HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale7 B SG CYS 101 B CYS 101 1_555 M CAC HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? covale ? covale8 N CAF ME7 . B ME7 501 1_555 D SG CYS 82 D CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? covale ? covale9 C SG CYS 98 C CYS 98 1_555 Q CAB HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? covale ? covale10 C SG CYS 101 C CYS 101 1_555 Q CAC HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale11 D SG CYS 98 D CYS 98 1_555 W CAB HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale12 D SG CYS 101 D CYS 101 1_555 W CAC HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc1 A N ALA 1 A ALA 1 1_555 H CU CU . A CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 H CU CU . A CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A OD2 ASP 2 A ASP 2 1_555 K CU CU . A CU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 A OD1 ASP 5 A ASP 5 1_555 J CU CU . A CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 A SD MET 7 A MET 7 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 A OE1 GLU 8 A GLU 8 1_555 L ZN ZN . A ZN 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc7 A OD2 ASP 12 A ASP 12 1_555 L ZN ZN . A ZN 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc8 A OD2 ASP 39 A ASP 39 1_555 H CU CU . A CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 A OD1 ASP 39 A ASP 39 1_555 H CU CU . A CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc10 A NE2 HIS 63 A HIS 63 1_555 V ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc11 A NE2 HIS 73 A HIS 73 1_555 G ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 A OD2 ASP 74 A ASP 74 1_555 P ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc13 A NE2 HIS 77 A HIS 77 1_555 G ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc14 A NE2 HIS 102 A HIS 102 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc15 I CU CU . A CU 108 1_555 K CU CU . A CU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc16 J CU CU . A CU 109 1_555 K CU CU . A CU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc17 G ZN ZN . A ZN 500 1_555 C OD2 ASP 74 C ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc18 G ZN ZN . A ZN 500 1_555 D NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc19 B SD MET 7 B MET 7 1_555 M FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc20 B NE2 HIS 63 B HIS 63 1_555 P ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc21 B NE2 HIS 73 B HIS 73 1_555 O ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc22 B OD2 ASP 74 B ASP 74 1_555 V ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc23 B NE2 HIS 77 B HIS 77 1_555 O ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc24 B NE2 HIS 102 B HIS 102 1_555 M FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc25 O ZN ZN . B ZN 500 1_555 C NE2 HIS 63 C HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc26 O ZN ZN . B ZN 500 1_555 D OD2 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc27 O ZN ZN . B ZN 500 1_555 D OD1 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc28 C N ALA 1 C ALA 1 1_555 U CU CU . C CU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc29 C O ALA 1 C ALA 1 1_555 U CU CU . C CU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc30 C OD2 ASP 2 C ASP 2 1_555 T CU CU . C CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc31 C OD1 ASP 5 C ASP 5 1_555 R CU CU . C CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc32 C SD MET 7 C MET 7 1_555 Q FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc33 C OD2 ASP 39 C ASP 39 1_555 U CU CU . C CU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc34 C OD1 ASP 39 C ASP 39 1_555 U CU CU . C CU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc35 C NE2 HIS 73 C HIS 73 1_555 P ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc36 C NE2 HIS 77 C HIS 77 1_555 P ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc37 C NE2 HIS 102 C HIS 102 1_555 Q FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc38 R CU CU . C CU 107 1_555 T CU CU . C CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc39 T CU CU . C CU 109 1_555 Z O HOH . C HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc40 D SD MET 7 D MET 7 1_555 W FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc41 D NE2 HIS 73 D HIS 73 1_555 V ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc42 D NE2 HIS 77 D HIS 77 1_555 V ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc43 D NE2 HIS 102 D HIS 102 1_555 W FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? # _chem_comp.formula 'C10 H8 N2 O4' _chem_comp.formula_weight 220.182 _chem_comp.id ME7 _chem_comp.mon_nstd_flag . _chem_comp.name "1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAK ME7 doub 300 n n OAB CAL ME7 doub 301 n n OAC CAM ME7 doub 302 n n CAN OAD ME7 doub 303 n n CAK CAE ME7 sing 304 n n CAE CAF ME7 doub 305 n n CAE HAE ME7 sing 306 n n CAL CAF ME7 sing 307 n n CAF HAF ME7 sing 308 n n CAG CAH ME7 doub 309 n n CAG CAM ME7 sing 310 n n CAG HAG ME7 sing 311 n n CAH CAN ME7 sing 312 n n CAH HAH ME7 sing 313 n n CAJ CAI ME7 sing 314 n n CAI NAO ME7 sing 315 n n CAI HAI ME7 sing 316 n n CAI HAIA ME7 sing 317 n n NAP CAJ ME7 sing 318 n n CAJ HAJ ME7 sing 319 n n CAJ HAJA ME7 sing 320 n n NAO CAK ME7 sing 321 n n NAO CAL ME7 sing 322 n n CAM NAP ME7 sing 323 n n CAN NAP ME7 sing 324 n n # _atom_sites.entry_id 3QVZ _atom_sites.fract_transf_matrix[1][1] 0.019039 _atom_sites.fract_transf_matrix[1][2] 0.010992 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 150 150 HEM HEM . F 3 ME7 A 1 501 501 ME7 ME7 . G 4 ZN A 1 500 500 ZN ZN . H 5 CU A 1 107 107 CU CU . I 5 CU A 1 108 108 CU CU . J 5 CU A 1 109 109 CU CU . K 5 CU A 1 110 110 CU CU . L 4 ZN A 1 111 111 ZN ZN . M 2 HEM B 1 150 150 HEM HEM . N 3 ME7 B 1 501 501 ME7 ME7 . O 4 ZN B 1 500 500 ZN ZN . P 4 ZN C 1 500 500 ZN ZN . Q 2 HEM C 1 150 150 HEM HEM . R 5 CU C 1 107 107 CU CU . S 5 CU C 1 108 108 CU CU . T 5 CU C 1 109 109 CU CU . U 5 CU C 1 110 110 CU CU . V 4 ZN D 1 500 500 ZN ZN . W 2 HEM D 1 150 150 HEM HEM . X 6 HOH A 1 112 112 HOH HOH . X 6 HOH A 2 113 113 HOH HOH . X 6 HOH A 3 114 114 HOH HOH . X 6 HOH A 4 115 115 HOH HOH . X 6 HOH A 5 116 116 HOH HOH . Y 6 HOH B 1 107 107 HOH HOH . Y 6 HOH B 2 108 108 HOH HOH . Y 6 HOH B 3 109 109 HOH HOH . Z 6 HOH C 1 111 111 HOH HOH . Z 6 HOH C 2 112 112 HOH HOH . Z 6 HOH C 3 113 113 HOH HOH . Z 6 HOH C 4 114 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ME7 . . . F 3 -39.831 6.935 -2.785 1 37.66 ? OAA ME7 501 A 1 HETATM 2 O OAB ME7 . . . F 3 -37.008 6.733 0.488 1 39.22 ? OAB ME7 501 A 1 HETATM 3 O OAC ME7 . . . F 3 -40.364 9.477 -0.097 1 37.98 ? OAC ME7 501 A 1 HETATM 4 O OAD ME7 . . . F 3 -38.826 6.785 3.077 1 35.86 ? OAD ME7 501 A 1 HETATM 5 C CAE ME7 . . . F 3 -37.606 7.725 -2.842 1 36.16 ? CAE ME7 501 A 1 HETATM 6 C CAF ME7 . . . F 3 -36.653 7.626 -1.688 1 35.83 ? CAF ME7 501 A 1 HETATM 7 C CAG ME7 . . . F 3 -38.837 9.961 1.553 1 36.16 ? CAG ME7 501 A 1 HETATM 8 C CAH ME7 . . . F 3 -38.296 9.092 2.678 1 35.87 ? CAH ME7 501 A 1 HETATM 9 C CAI ME7 . . . F 3 -39.646 6.042 -0.132 1 38.67 ? CAI ME7 501 A 1 HETATM 10 C CAJ ME7 . . . F 3 -40.62 6.775 0.804 1 38.47 ? CAJ ME7 501 A 1 HETATM 11 C CAK ME7 . . . F 3 -38.802 7.074 -2.215 1 37.59 ? CAK ME7 501 A 1 HETATM 12 C CAL ME7 . . . F 3 -37.45 6.977 -0.604 1 37.8 ? CAL ME7 501 A 1 HETATM 13 C CAM ME7 . . . F 3 -39.785 9.007 0.848 1 37.87 ? CAM ME7 501 A 1 HETATM 14 C CAN ME7 . . . F 3 -39.041 7.791 2.518 1 36.58 ? CAN ME7 501 A 1 HETATM 15 N NAO ME7 . . . F 3 -38.659 6.72 -0.976 1 38.08 ? NAO ME7 501 A 1 HETATM 16 N NAP ME7 . . . F 3 -39.835 7.79 1.421 1 38.05 ? NAP ME7 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #