data_3QW1
#
_model_server_result.job_id            fkzCYcPby_UNJLOfAKIr_A 
_model_server_result.datetime_utc      '2024-11-08 14:35:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qw1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    3QW1 
#
_exptl.entry_id    3QW1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              113.115 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-methylpyrrolidine-2,5-dione 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.22 
_cell.angle_gamma         90 
_cell.entry_id            3QW1 
_cell.length_a            48.298 
_cell.length_b            61.843 
_cell.length_c            70.087 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QW1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 82 A CYS 82 1_555 G C1 LCY . A LCY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
covale ? covale2 A SG CYS 98 A CYS 98 1_555 F CAB HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? 
covale ? covale3 A SG CYS 101 A CYS 101 1_555 F CAC HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
covale ? covale4 B SG CYS 82 B CYS 82 1_555 J C1 LCY . B LCY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? 
covale ? covale5 B SG CYS 98 B CYS 98 1_555 I CAB HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
covale ? covale6 B SG CYS 101 B CYS 101 1_555 I CAC HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
covale ? covale7 C SG CYS 82 C CYS 82 1_555 M C1 LCY . C LCY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
covale ? covale8 C SG CYS 98 C CYS 98 1_555 L CAB HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
covale ? covale9 C SG CYS 101 C CYS 101 1_555 L CAC HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? 
covale ? covale10 D SG CYS 82 D CYS 82 1_555 P C2 LCY . D LCY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? 
covale ? covale11 D SG CYS 98 D CYS 98 1_555 O CAB HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
covale ? covale12 D SG CYS 101 D CYS 101 1_555 O CAC HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
metalc ? metalc1 A SD MET 7 A MET 7 1_555 F FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 N ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc3 A NE2 HIS 73 A HIS 73 1_555 E ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc4 A OD2 ASP 74 A ASP 74 1_555 K ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc5 A OD1 ASP 74 A ASP 74 1_555 K ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc6 A NE2 HIS 77 A HIS 77 1_555 E ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc7 A NE2 HIS 102 A HIS 102 1_555 F FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc8 E ZN ZN . A ZN 500 1_555 C OD2 ASP 74 C ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc9 E ZN ZN . A ZN 500 1_555 D NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc10 B SD MET 7 B MET 7 1_555 I FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc11 B NE2 HIS 63 B HIS 63 1_555 K ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc12 B NE2 HIS 73 B HIS 73 1_555 H ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc13 B OD2 ASP 74 B ASP 74 1_555 N ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc14 B NE2 HIS 77 B HIS 77 1_555 H ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc15 B NE2 HIS 102 B HIS 102 1_555 I FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc16 H ZN ZN . B ZN 500 1_555 C NE2 HIS 63 C HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc17 H ZN ZN . B ZN 500 1_555 D OD2 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc18 H ZN ZN . B ZN 500 1_555 D OD1 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc19 C SD MET 7 C MET 7 1_555 L FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc20 C NE2 HIS 73 C HIS 73 1_555 K ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc21 C NE2 HIS 77 C HIS 77 1_555 K ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? 
metalc ? metalc22 C NE2 HIS 102 C HIS 102 1_555 L FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc23 D OE2 GLU 4 D GLU 4 1_555 Q ZN ZN . D ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc24 D OD2 ASP 5 D ASP 5 1_555 Q ZN ZN . D ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc25 D SD MET 7 D MET 7 1_555 O FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc26 D NE2 HIS 73 D HIS 73 1_555 N ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc27 D NE2 HIS 77 D HIS 77 1_555 N ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc28 D NE2 HIS 102 D HIS 102 1_555 O FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc29 Q ZN ZN . D ZN 107 1_555 U O HOH . D HOH 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
#
_chem_comp.formula           'C5 H7 N O2' 
_chem_comp.formula_weight    113.115 
_chem_comp.id                LCY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-methylpyrrolidine-2,5-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LCY sing 255 n n 
C1 C4 LCY sing 256 n n 
C2 C3 LCY sing 257 n n 
C3 O2 LCY doub 258 n n 
C3 N1 LCY sing 259 n n 
N1 C4 LCY sing 260 n n 
N1 C5 LCY sing 261 n n 
C4 O1 LCY doub 262 n n 
C1 H1 LCY sing 263 n n 
C1 H1A LCY sing 264 n n 
C2 H2 LCY sing 265 n n 
C2 H2A LCY sing 266 n n 
C5 H5 LCY sing 267 n n 
C5 H5A LCY sing 268 n n 
C5 H5B LCY sing 269 n n 
#
_atom_sites.entry_id                     3QW1 
_atom_sites.fract_transf_matrix[1][1]    0.020705 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004484 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01617 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 500 500 ZN ZN . 
F 3 HEM A 1 150 150 HEM HEM . 
G 4 LCY A 1 501 501 LCY LCY . 
H 2 ZN B 1 500 500 ZN ZN . 
I 3 HEM B 1 150 150 HEM HEM . 
J 4 LCY B 1 501 501 LCY LCY . 
K 2 ZN C 1 500 500 ZN ZN . 
L 3 HEM C 1 150 150 HEM HEM . 
M 4 LCY C 1 501 501 LCY LCY . 
N 2 ZN D 1 500 500 ZN ZN . 
O 3 HEM D 1 150 150 HEM HEM . 
P 4 LCY D 1 501 501 LCY LCY . 
Q 2 ZN D 1 107 107 ZN ZN . 
R 5 HOH A 1 107 107 HOH HOH . 
S 5 HOH B 1 107 107 HOH HOH . 
S 5 HOH B 2 108 108 HOH HOH . 
T 5 HOH C 1 107 107 HOH HOH . 
T 5 HOH C 2 108 108 HOH HOH . 
T 5 HOH C 3 109 109 HOH HOH . 
T 5 HOH C 4 110 110 HOH HOH . 
U 5 HOH D 1 108 108 HOH HOH . 
U 5 HOH D 2 109 109 HOH HOH . 
U 5 HOH D 3 110 110 HOH HOH . 
U 5 HOH D 4 111 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LCY . . . M 4 4.01 20.253 6.368 1 42.18 ? C1 LCY 501 C 1 
HETATM 2 C C2 LCY . . . M 4 3.31 19.446 7.439 1 43.27 ? C2 LCY 501 C 1 
HETATM 3 C C3 LCY . . . M 4 2.824 18.218 6.676 1 44.77 ? C3 LCY 501 C 1 
HETATM 4 O O2 LCY . . . M 4 2.194 17.295 7.19 1 42.73 ? O2 LCY 501 C 1 
HETATM 5 N N1 LCY . . . M 4 3.161 18.261 5.38 1 44.19 ? N1 LCY 501 C 1 
HETATM 6 C C4 LCY . . . M 4 3.84 19.388 5.123 1 43.15 ? C4 LCY 501 C 1 
HETATM 7 O O1 LCY . . . M 4 4.274 19.69 4.013 1 46.33 ? O1 LCY 501 C 1 
HETATM 8 C C5 LCY . . . M 4 2.835 17.219 4.381 1 43.43 ? C5 LCY 501 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#