data_3QWC # _model_server_result.job_id tuuU9f59en_yWR2JatSWSw _model_server_result.datetime_utc '2024-11-26 09:27:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 3QWC # _exptl.entry_id 3QWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.6 _cell.angle_gamma 90 _cell.entry_id 3QWC _cell.length_a 70.6 _cell.length_b 71.5 _cell.length_c 72.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 260 1_555 G ? ? G ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 C C GLU 10 I GLU 562 1_555 C N TYS 11 I TYS 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C TYS 11 I TYS 563 1_555 C N LEU 12 I LEU 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QWC _atom_sites.fract_transf_matrix[1][1] 0.014164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 260 260 NAG NAG G E 5 NA H 1 1001 1001 NA NA . F 5 NA H 1 1002 1002 NA NA . G 6 GOL H 1 1501 1501 GOL GOL . H 7 98P H 1 2001 2001 98P 98P . I 8 HOH L 1 3001 3001 HOH HOH . I 8 HOH L 2 3002 3002 HOH HOH . I 8 HOH L 3 3003 3003 HOH HOH . I 8 HOH L 4 3004 3004 HOH HOH . I 8 HOH L 5 3005 3005 HOH HOH . I 8 HOH L 6 3006 3006 HOH HOH . I 8 HOH L 7 3007 3007 HOH HOH . I 8 HOH L 8 3008 3008 HOH HOH . I 8 HOH L 9 3009 3009 HOH HOH . I 8 HOH L 10 3010 3010 HOH HOH . I 8 HOH L 11 3011 3011 HOH HOH . I 8 HOH L 12 3012 3012 HOH HOH . I 8 HOH L 13 3013 3013 HOH HOH . I 8 HOH L 14 3014 3014 HOH HOH . I 8 HOH L 15 3015 3015 HOH HOH . I 8 HOH L 16 3016 3016 HOH HOH . I 8 HOH L 17 3017 3017 HOH HOH . I 8 HOH L 18 3018 3018 HOH HOH . I 8 HOH L 19 3019 3019 HOH HOH . I 8 HOH L 20 3020 3020 HOH HOH . I 8 HOH L 21 3021 3021 HOH HOH . I 8 HOH L 22 3022 3022 HOH HOH . I 8 HOH L 23 3023 3023 HOH HOH . I 8 HOH L 24 3024 3024 HOH HOH . I 8 HOH L 25 3025 3025 HOH HOH . I 8 HOH L 26 3026 3026 HOH HOH . I 8 HOH L 27 3027 3027 HOH HOH . I 8 HOH L 28 3028 3029 HOH HOH . I 8 HOH L 29 3029 3030 HOH HOH . I 8 HOH L 30 3030 3031 HOH HOH . I 8 HOH L 31 3031 3032 HOH HOH . I 8 HOH L 32 3032 3033 HOH HOH . I 8 HOH L 33 3033 3034 HOH HOH . I 8 HOH L 34 3034 3035 HOH HOH . I 8 HOH L 35 3035 3036 HOH HOH . I 8 HOH L 36 3036 3037 HOH HOH . I 8 HOH L 37 3037 3038 HOH HOH . I 8 HOH L 38 3038 3039 HOH HOH . I 8 HOH L 39 3039 3040 HOH HOH . I 8 HOH L 40 3040 3041 HOH HOH . I 8 HOH L 41 3041 3042 HOH HOH . J 8 HOH H 1 3042 3043 HOH HOH . J 8 HOH H 2 3043 3044 HOH HOH . J 8 HOH H 3 3044 3045 HOH HOH . J 8 HOH H 4 3045 3046 HOH HOH . J 8 HOH H 5 3046 3047 HOH HOH . J 8 HOH H 6 3047 3048 HOH HOH . J 8 HOH H 7 3048 3049 HOH HOH . J 8 HOH H 8 3049 3050 HOH HOH . J 8 HOH H 9 3050 3051 HOH HOH . J 8 HOH H 10 3051 3052 HOH HOH . J 8 HOH H 11 3052 3053 HOH HOH . J 8 HOH H 12 3053 3054 HOH HOH . J 8 HOH H 13 3054 3055 HOH HOH . J 8 HOH H 14 3055 3056 HOH HOH . J 8 HOH H 15 3056 3057 HOH HOH . J 8 HOH H 16 3057 3058 HOH HOH . J 8 HOH H 17 3058 3059 HOH HOH . J 8 HOH H 18 3059 3060 HOH HOH . J 8 HOH H 19 3060 3061 HOH HOH . J 8 HOH H 20 3061 3062 HOH HOH . J 8 HOH H 21 3062 3063 HOH HOH . J 8 HOH H 22 3063 3064 HOH HOH . J 8 HOH H 23 3064 3065 HOH HOH . J 8 HOH H 24 3065 3066 HOH HOH . J 8 HOH H 25 3066 3067 HOH HOH . J 8 HOH H 26 3067 3068 HOH HOH . J 8 HOH H 27 3068 3069 HOH HOH . J 8 HOH H 28 3069 3070 HOH HOH . J 8 HOH H 29 3070 3071 HOH HOH . J 8 HOH H 30 3071 3072 HOH HOH . J 8 HOH H 31 3072 3073 HOH HOH . J 8 HOH H 32 3073 3074 HOH HOH . J 8 HOH H 33 3074 3075 HOH HOH . J 8 HOH H 34 3075 3076 HOH HOH . J 8 HOH H 35 3076 3077 HOH HOH . J 8 HOH H 36 3077 3078 HOH HOH . J 8 HOH H 37 3078 3079 HOH HOH . J 8 HOH H 38 3079 3080 HOH HOH . J 8 HOH H 39 3080 3081 HOH HOH . J 8 HOH H 40 3081 3082 HOH HOH . J 8 HOH H 41 3082 3083 HOH HOH . J 8 HOH H 42 3083 3084 HOH HOH . J 8 HOH H 43 3084 3085 HOH HOH . J 8 HOH H 44 3085 3086 HOH HOH . J 8 HOH H 45 3086 3087 HOH HOH . J 8 HOH H 46 3087 3088 HOH HOH . J 8 HOH H 47 3088 3089 HOH HOH . J 8 HOH H 48 3089 3090 HOH HOH . J 8 HOH H 49 3090 3091 HOH HOH . J 8 HOH H 50 3091 3092 HOH HOH . J 8 HOH H 51 3092 3093 HOH HOH . J 8 HOH H 52 3093 3094 HOH HOH . J 8 HOH H 53 3094 3095 HOH HOH . J 8 HOH H 54 3095 3096 HOH HOH . J 8 HOH H 55 3096 3097 HOH HOH . J 8 HOH H 56 3097 3098 HOH HOH . J 8 HOH H 57 3098 3099 HOH HOH . J 8 HOH H 58 3099 3100 HOH HOH . J 8 HOH H 59 3100 3101 HOH HOH . J 8 HOH H 60 3101 3102 HOH HOH . J 8 HOH H 61 3102 3103 HOH HOH . J 8 HOH H 62 3103 3104 HOH HOH . J 8 HOH H 63 3104 3105 HOH HOH . J 8 HOH H 64 3105 3106 HOH HOH . J 8 HOH H 65 3106 3107 HOH HOH . J 8 HOH H 66 3107 3108 HOH HOH . J 8 HOH H 67 3108 3109 HOH HOH . J 8 HOH H 68 3109 3110 HOH HOH . J 8 HOH H 69 3110 3111 HOH HOH . J 8 HOH H 70 3111 3112 HOH HOH . J 8 HOH H 71 3112 3113 HOH HOH . J 8 HOH H 72 3113 3114 HOH HOH . J 8 HOH H 73 3114 3115 HOH HOH . J 8 HOH H 74 3115 3116 HOH HOH . J 8 HOH H 75 3116 3117 HOH HOH . J 8 HOH H 76 3117 3118 HOH HOH . J 8 HOH H 77 3118 3119 HOH HOH . J 8 HOH H 78 3119 3120 HOH HOH . J 8 HOH H 79 3120 3121 HOH HOH . J 8 HOH H 80 3121 3122 HOH HOH . J 8 HOH H 81 3122 3123 HOH HOH . J 8 HOH H 82 3123 3124 HOH HOH . J 8 HOH H 83 3124 3125 HOH HOH . J 8 HOH H 84 3125 3126 HOH HOH . J 8 HOH H 85 3126 3127 HOH HOH . J 8 HOH H 86 3127 3128 HOH HOH . J 8 HOH H 87 3128 3129 HOH HOH . J 8 HOH H 88 3129 3130 HOH HOH . J 8 HOH H 89 3130 3131 HOH HOH . J 8 HOH H 90 3131 3132 HOH HOH . J 8 HOH H 91 3132 3133 HOH HOH . J 8 HOH H 92 3133 3134 HOH HOH . J 8 HOH H 93 3134 3135 HOH HOH . J 8 HOH H 94 3135 3136 HOH HOH . J 8 HOH H 95 3136 3137 HOH HOH . J 8 HOH H 96 3137 3138 HOH HOH . J 8 HOH H 97 3138 3139 HOH HOH . J 8 HOH H 98 3139 3140 HOH HOH . J 8 HOH H 99 3140 3141 HOH HOH . J 8 HOH H 100 3141 3142 HOH HOH . J 8 HOH H 101 3142 3143 HOH HOH . J 8 HOH H 102 3143 3144 HOH HOH . J 8 HOH H 103 3144 3145 HOH HOH . J 8 HOH H 104 3145 3146 HOH HOH . J 8 HOH H 105 3146 3147 HOH HOH . J 8 HOH H 106 3147 3148 HOH HOH . J 8 HOH H 107 3148 3149 HOH HOH . J 8 HOH H 108 3149 3150 HOH HOH . J 8 HOH H 109 3150 3151 HOH HOH . J 8 HOH H 110 3151 3152 HOH HOH . J 8 HOH H 111 3152 3153 HOH HOH . J 8 HOH H 112 3153 3154 HOH HOH . J 8 HOH H 113 3154 3155 HOH HOH . J 8 HOH H 114 3155 3156 HOH HOH . J 8 HOH H 115 3156 3157 HOH HOH . J 8 HOH H 116 3157 3158 HOH HOH . J 8 HOH H 117 3158 3159 HOH HOH . J 8 HOH H 118 3159 3160 HOH HOH . J 8 HOH H 119 3160 3161 HOH HOH . J 8 HOH H 120 3161 3162 HOH HOH . J 8 HOH H 121 3162 3163 HOH HOH . J 8 HOH H 122 3163 3164 HOH HOH . J 8 HOH H 123 3164 3165 HOH HOH . J 8 HOH H 124 3165 3166 HOH HOH . J 8 HOH H 125 3166 3167 HOH HOH . J 8 HOH H 126 3167 3168 HOH HOH . J 8 HOH H 127 3168 3169 HOH HOH . J 8 HOH H 128 3169 3170 HOH HOH . J 8 HOH H 129 3170 3171 HOH HOH . J 8 HOH H 130 3171 3172 HOH HOH . J 8 HOH H 131 3172 3173 HOH HOH . J 8 HOH H 132 3173 3174 HOH HOH . J 8 HOH H 133 3174 3175 HOH HOH . J 8 HOH H 134 3175 3176 HOH HOH . J 8 HOH H 135 3176 3177 HOH HOH . J 8 HOH H 136 3177 3178 HOH HOH . J 8 HOH H 137 3178 3179 HOH HOH . J 8 HOH H 138 3179 3180 HOH HOH . J 8 HOH H 139 3180 3181 HOH HOH . J 8 HOH H 140 3181 3182 HOH HOH . J 8 HOH H 141 3182 3183 HOH HOH . J 8 HOH H 142 3183 3184 HOH HOH . J 8 HOH H 143 3184 3185 HOH HOH . J 8 HOH H 144 3185 3186 HOH HOH . J 8 HOH H 145 3186 3187 HOH HOH . J 8 HOH H 146 3187 3188 HOH HOH . J 8 HOH H 147 3188 3189 HOH HOH . J 8 HOH H 148 3189 3190 HOH HOH . J 8 HOH H 149 3190 3191 HOH HOH . J 8 HOH H 150 3191 3192 HOH HOH . J 8 HOH H 151 3192 3193 HOH HOH . J 8 HOH H 152 3193 3194 HOH HOH . J 8 HOH H 153 3194 3195 HOH HOH . J 8 HOH H 154 3195 3196 HOH HOH . J 8 HOH H 155 3196 3197 HOH HOH . J 8 HOH H 156 3197 3198 HOH HOH . J 8 HOH H 157 3198 3199 HOH HOH . J 8 HOH H 158 3199 3200 HOH HOH . J 8 HOH H 159 3200 3201 HOH HOH . J 8 HOH H 160 3201 3202 HOH HOH . J 8 HOH H 161 3202 3203 HOH HOH . J 8 HOH H 162 3203 3204 HOH HOH . J 8 HOH H 163 3204 3205 HOH HOH . J 8 HOH H 164 3205 3206 HOH HOH . J 8 HOH H 165 3206 3207 HOH HOH . J 8 HOH H 166 3207 3208 HOH HOH . J 8 HOH H 167 3208 3209 HOH HOH . J 8 HOH H 168 3209 3210 HOH HOH . J 8 HOH H 169 3210 3211 HOH HOH . J 8 HOH H 170 3211 3212 HOH HOH . J 8 HOH H 171 3212 3213 HOH HOH . J 8 HOH H 172 3213 3214 HOH HOH . J 8 HOH H 173 3214 3215 HOH HOH . J 8 HOH H 174 3215 3216 HOH HOH . J 8 HOH H 175 3216 3217 HOH HOH . J 8 HOH H 176 3217 3218 HOH HOH . J 8 HOH H 177 3218 3219 HOH HOH . J 8 HOH H 178 3219 3220 HOH HOH . J 8 HOH H 179 3220 3221 HOH HOH . J 8 HOH H 180 3221 3222 HOH HOH . J 8 HOH H 181 3222 3223 HOH HOH . J 8 HOH H 182 3223 3224 HOH HOH . J 8 HOH H 183 3224 3225 HOH HOH . J 8 HOH H 184 3225 3226 HOH HOH . J 8 HOH H 185 3226 3227 HOH HOH . J 8 HOH H 186 3227 3228 HOH HOH . J 8 HOH H 187 3228 3229 HOH HOH . J 8 HOH H 188 3229 3230 HOH HOH . J 8 HOH H 189 3230 3231 HOH HOH . J 8 HOH H 190 3231 3232 HOH HOH . J 8 HOH H 191 3232 3233 HOH HOH . J 8 HOH H 192 3233 3234 HOH HOH . J 8 HOH H 193 3234 3235 HOH HOH . J 8 HOH H 194 3235 3236 HOH HOH . J 8 HOH H 195 3236 3237 HOH HOH . J 8 HOH H 196 3237 3238 HOH HOH . J 8 HOH H 197 3238 3239 HOH HOH . J 8 HOH H 198 3239 3240 HOH HOH . J 8 HOH H 199 3240 3241 HOH HOH . J 8 HOH H 200 3241 3242 HOH HOH . J 8 HOH H 201 3242 3243 HOH HOH . J 8 HOH H 202 3243 3244 HOH HOH . J 8 HOH H 203 3244 3245 HOH HOH . J 8 HOH H 204 3245 3246 HOH HOH . J 8 HOH H 205 3246 3247 HOH HOH . J 8 HOH H 206 3247 3248 HOH HOH . J 8 HOH H 207 3248 3249 HOH HOH . J 8 HOH H 208 3249 3250 HOH HOH . J 8 HOH H 209 3250 3251 HOH HOH . J 8 HOH H 210 3251 3252 HOH HOH . J 8 HOH H 211 3252 3253 HOH HOH . J 8 HOH H 212 3253 3254 HOH HOH . K 8 HOH I 1 3254 3255 HOH HOH . K 8 HOH I 2 3255 3256 HOH HOH . K 8 HOH I 3 3256 3257 HOH HOH . K 8 HOH I 4 3257 3258 HOH HOH . K 8 HOH I 5 3258 3259 HOH HOH . K 8 HOH I 6 3259 3260 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 5.712 _atom_site.Cartn_y -12.629 _atom_site.Cartn_z 30.493 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #