data_3QWH # _model_server_result.job_id u5SpYU5IySq8qsW4EfjeJw _model_server_result.datetime_utc '2024-11-01 05:39:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qwh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":272}' # _entry.id 3QWH # _exptl.entry_id 3QWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.54 _cell.angle_gamma 90 _cell.entry_id 3QWH _cell.length_a 62.95 _cell.length_b 116.64 _cell.length_c 70.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,M,N 1 1 C,D,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 L N N # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id KMP _chem_comp.mon_nstd_flag . _chem_comp.name 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KAEMPHEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KMP doub 173 n y C1 C6 KMP sing 174 n y C1 H1 KMP sing 175 n n C2 C3 KMP sing 176 n y C2 O30 KMP sing 177 n n C3 C4 KMP doub 178 n y C3 C9 KMP sing 179 n y C4 C5 KMP sing 180 n y C4 O12 KMP sing 181 n y C5 C6 KMP doub 182 n y C5 H5 KMP sing 183 n n C6 O29 KMP sing 184 n n C9 C10 KMP sing 185 n y C9 O13 KMP doub 186 n n C10 C11 KMP doub 187 n y C10 O27 KMP sing 188 n n C11 C14 KMP sing 189 n y C11 O12 KMP sing 190 n y C14 C15 KMP doub 191 n y C14 C19 KMP sing 192 n y C15 C16 KMP sing 193 n y C15 H15 KMP sing 194 n n C16 C17 KMP doub 195 n y C16 H16 KMP sing 196 n n C17 C18 KMP sing 197 n y C17 O24 KMP sing 198 n n C18 C19 KMP doub 199 n y C18 H18 KMP sing 200 n n C19 H19 KMP sing 201 n n O24 H24 KMP sing 202 n n O27 H27 KMP sing 203 n n O29 H29 KMP sing 204 n n O30 H30 KMP sing 205 n n # _atom_sites.entry_id 3QWH _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003533 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 271 271 NAP NAP . F 3 KMP A 1 272 272 KMP KMP . G 2 NAP B 1 271 271 NAP NAP . H 3 KMP B 1 272 272 KMP KMP . I 4 PEG B 1 273 273 PEG PEG . J 2 NAP C 1 271 271 NAP NAP . K 2 NAP D 1 271 271 NAP NAP . L 3 KMP D 1 272 272 KMP KMP . M 5 HOH A 1 273 273 HOH HOH . M 5 HOH A 2 274 274 HOH HOH . M 5 HOH A 3 275 275 HOH HOH . M 5 HOH A 4 276 276 HOH HOH . M 5 HOH A 5 277 277 HOH HOH . M 5 HOH A 6 278 278 HOH HOH . M 5 HOH A 7 279 279 HOH HOH . M 5 HOH A 8 280 280 HOH HOH . M 5 HOH A 9 281 281 HOH HOH . M 5 HOH A 10 282 282 HOH HOH . M 5 HOH A 11 283 283 HOH HOH . M 5 HOH A 12 284 284 HOH HOH . M 5 HOH A 13 285 285 HOH HOH . M 5 HOH A 14 286 286 HOH HOH . M 5 HOH A 15 287 287 HOH HOH . M 5 HOH A 16 288 288 HOH HOH . M 5 HOH A 17 289 289 HOH HOH . M 5 HOH A 18 290 290 HOH HOH . M 5 HOH A 19 291 291 HOH HOH . M 5 HOH A 20 292 292 HOH HOH . M 5 HOH A 21 293 293 HOH HOH . M 5 HOH A 22 294 294 HOH HOH . M 5 HOH A 23 295 295 HOH HOH . M 5 HOH A 24 296 296 HOH HOH . M 5 HOH A 25 297 297 HOH HOH . M 5 HOH A 26 298 298 HOH HOH . M 5 HOH A 27 299 299 HOH HOH . M 5 HOH A 28 300 300 HOH HOH . M 5 HOH A 29 301 301 HOH HOH . M 5 HOH A 30 302 302 HOH HOH . M 5 HOH A 31 303 303 HOH HOH . M 5 HOH A 32 304 304 HOH HOH . M 5 HOH A 33 305 305 HOH HOH . M 5 HOH A 34 306 306 HOH HOH . M 5 HOH A 35 307 307 HOH HOH . M 5 HOH A 36 308 308 HOH HOH . M 5 HOH A 37 309 309 HOH HOH . M 5 HOH A 38 310 310 HOH HOH . M 5 HOH A 39 311 311 HOH HOH . M 5 HOH A 40 312 312 HOH HOH . M 5 HOH A 41 313 313 HOH HOH . M 5 HOH A 42 314 314 HOH HOH . M 5 HOH A 43 315 315 HOH HOH . M 5 HOH A 44 316 316 HOH HOH . M 5 HOH A 45 317 317 HOH HOH . M 5 HOH A 46 318 318 HOH HOH . M 5 HOH A 47 319 319 HOH HOH . M 5 HOH A 48 320 320 HOH HOH . M 5 HOH A 49 321 321 HOH HOH . M 5 HOH A 50 322 322 HOH HOH . M 5 HOH A 51 323 323 HOH HOH . M 5 HOH A 52 324 324 HOH HOH . M 5 HOH A 53 325 325 HOH HOH . N 5 HOH B 1 274 274 HOH HOH . N 5 HOH B 2 275 275 HOH HOH . N 5 HOH B 3 276 276 HOH HOH . N 5 HOH B 4 277 277 HOH HOH . N 5 HOH B 5 278 278 HOH HOH . N 5 HOH B 6 279 279 HOH HOH . N 5 HOH B 7 280 280 HOH HOH . N 5 HOH B 8 281 281 HOH HOH . N 5 HOH B 9 282 282 HOH HOH . N 5 HOH B 10 283 283 HOH HOH . N 5 HOH B 11 284 284 HOH HOH . N 5 HOH B 12 285 285 HOH HOH . N 5 HOH B 13 286 286 HOH HOH . N 5 HOH B 14 287 287 HOH HOH . N 5 HOH B 15 288 288 HOH HOH . N 5 HOH B 16 289 289 HOH HOH . N 5 HOH B 17 290 290 HOH HOH . N 5 HOH B 18 291 291 HOH HOH . N 5 HOH B 19 292 292 HOH HOH . N 5 HOH B 20 293 293 HOH HOH . N 5 HOH B 21 294 294 HOH HOH . N 5 HOH B 22 295 295 HOH HOH . N 5 HOH B 23 296 296 HOH HOH . N 5 HOH B 24 297 297 HOH HOH . N 5 HOH B 25 298 298 HOH HOH . N 5 HOH B 26 299 299 HOH HOH . N 5 HOH B 27 300 300 HOH HOH . N 5 HOH B 28 301 301 HOH HOH . N 5 HOH B 29 302 302 HOH HOH . N 5 HOH B 30 303 303 HOH HOH . N 5 HOH B 31 304 304 HOH HOH . N 5 HOH B 32 305 305 HOH HOH . N 5 HOH B 33 306 306 HOH HOH . N 5 HOH B 34 307 307 HOH HOH . N 5 HOH B 35 308 308 HOH HOH . N 5 HOH B 36 309 309 HOH HOH . N 5 HOH B 37 310 310 HOH HOH . N 5 HOH B 38 311 311 HOH HOH . N 5 HOH B 39 312 312 HOH HOH . N 5 HOH B 40 313 313 HOH HOH . N 5 HOH B 41 314 314 HOH HOH . N 5 HOH B 42 315 315 HOH HOH . N 5 HOH B 43 316 316 HOH HOH . N 5 HOH B 44 317 317 HOH HOH . N 5 HOH B 45 318 318 HOH HOH . N 5 HOH B 46 319 319 HOH HOH . N 5 HOH B 47 320 320 HOH HOH . N 5 HOH B 48 321 321 HOH HOH . N 5 HOH B 49 322 322 HOH HOH . N 5 HOH B 50 323 323 HOH HOH . N 5 HOH B 51 324 324 HOH HOH . N 5 HOH B 52 325 325 HOH HOH . N 5 HOH B 53 326 326 HOH HOH . N 5 HOH B 54 327 327 HOH HOH . N 5 HOH B 55 328 328 HOH HOH . N 5 HOH B 56 329 329 HOH HOH . N 5 HOH B 57 330 330 HOH HOH . N 5 HOH B 58 331 331 HOH HOH . N 5 HOH B 59 332 332 HOH HOH . N 5 HOH B 60 333 333 HOH HOH . N 5 HOH B 61 334 334 HOH HOH . N 5 HOH B 62 335 335 HOH HOH . N 5 HOH B 63 336 336 HOH HOH . N 5 HOH B 64 337 337 HOH HOH . N 5 HOH B 65 338 338 HOH HOH . N 5 HOH B 66 339 339 HOH HOH . N 5 HOH B 67 340 340 HOH HOH . N 5 HOH B 68 341 341 HOH HOH . N 5 HOH B 69 342 342 HOH HOH . N 5 HOH B 70 343 343 HOH HOH . O 5 HOH C 1 272 272 HOH HOH . O 5 HOH C 2 273 273 HOH HOH . O 5 HOH C 3 274 274 HOH HOH . O 5 HOH C 4 275 275 HOH HOH . O 5 HOH C 5 276 276 HOH HOH . O 5 HOH C 6 277 277 HOH HOH . O 5 HOH C 7 278 278 HOH HOH . O 5 HOH C 8 279 279 HOH HOH . O 5 HOH C 9 280 280 HOH HOH . O 5 HOH C 10 281 281 HOH HOH . O 5 HOH C 11 282 282 HOH HOH . O 5 HOH C 12 283 283 HOH HOH . O 5 HOH C 13 284 284 HOH HOH . O 5 HOH C 14 285 285 HOH HOH . O 5 HOH C 15 286 286 HOH HOH . O 5 HOH C 16 287 287 HOH HOH . O 5 HOH C 17 288 288 HOH HOH . O 5 HOH C 18 289 289 HOH HOH . O 5 HOH C 19 290 290 HOH HOH . O 5 HOH C 20 291 291 HOH HOH . O 5 HOH C 21 292 292 HOH HOH . O 5 HOH C 22 293 293 HOH HOH . O 5 HOH C 23 294 294 HOH HOH . O 5 HOH C 24 295 295 HOH HOH . O 5 HOH C 25 296 296 HOH HOH . O 5 HOH C 26 297 297 HOH HOH . O 5 HOH C 27 298 298 HOH HOH . O 5 HOH C 28 299 299 HOH HOH . O 5 HOH C 29 300 300 HOH HOH . O 5 HOH C 30 301 301 HOH HOH . O 5 HOH C 31 302 302 HOH HOH . O 5 HOH C 32 303 303 HOH HOH . O 5 HOH C 33 304 304 HOH HOH . O 5 HOH C 34 305 305 HOH HOH . O 5 HOH C 35 306 306 HOH HOH . O 5 HOH C 36 307 307 HOH HOH . O 5 HOH C 37 308 308 HOH HOH . O 5 HOH C 38 309 309 HOH HOH . O 5 HOH C 39 310 310 HOH HOH . O 5 HOH C 40 311 311 HOH HOH . O 5 HOH C 41 312 312 HOH HOH . O 5 HOH C 42 313 313 HOH HOH . O 5 HOH C 43 314 314 HOH HOH . O 5 HOH C 44 315 315 HOH HOH . O 5 HOH C 45 316 316 HOH HOH . O 5 HOH C 46 317 317 HOH HOH . O 5 HOH C 47 318 318 HOH HOH . O 5 HOH C 48 319 319 HOH HOH . O 5 HOH C 49 320 320 HOH HOH . O 5 HOH C 50 321 321 HOH HOH . O 5 HOH C 51 322 322 HOH HOH . O 5 HOH C 52 323 323 HOH HOH . O 5 HOH C 53 324 324 HOH HOH . O 5 HOH C 54 325 325 HOH HOH . O 5 HOH C 55 326 326 HOH HOH . O 5 HOH C 56 327 327 HOH HOH . O 5 HOH C 57 328 328 HOH HOH . O 5 HOH C 58 329 329 HOH HOH . P 5 HOH D 1 273 273 HOH HOH . P 5 HOH D 2 274 274 HOH HOH . P 5 HOH D 3 275 275 HOH HOH . P 5 HOH D 4 276 276 HOH HOH . P 5 HOH D 5 277 277 HOH HOH . P 5 HOH D 6 278 278 HOH HOH . P 5 HOH D 7 279 279 HOH HOH . P 5 HOH D 8 280 280 HOH HOH . P 5 HOH D 9 281 281 HOH HOH . P 5 HOH D 10 282 282 HOH HOH . P 5 HOH D 11 283 283 HOH HOH . P 5 HOH D 12 284 284 HOH HOH . P 5 HOH D 13 285 285 HOH HOH . P 5 HOH D 14 286 286 HOH HOH . P 5 HOH D 15 287 287 HOH HOH . P 5 HOH D 16 288 288 HOH HOH . P 5 HOH D 17 289 289 HOH HOH . P 5 HOH D 18 290 290 HOH HOH . P 5 HOH D 19 291 291 HOH HOH . P 5 HOH D 20 292 292 HOH HOH . P 5 HOH D 21 293 293 HOH HOH . P 5 HOH D 22 294 294 HOH HOH . P 5 HOH D 23 295 295 HOH HOH . P 5 HOH D 24 296 296 HOH HOH . P 5 HOH D 25 297 297 HOH HOH . P 5 HOH D 26 298 298 HOH HOH . P 5 HOH D 27 299 299 HOH HOH . P 5 HOH D 28 300 300 HOH HOH . P 5 HOH D 29 301 301 HOH HOH . P 5 HOH D 30 302 302 HOH HOH . P 5 HOH D 31 303 303 HOH HOH . P 5 HOH D 32 304 304 HOH HOH . P 5 HOH D 33 305 305 HOH HOH . P 5 HOH D 34 306 306 HOH HOH . P 5 HOH D 35 307 307 HOH HOH . P 5 HOH D 36 308 308 HOH HOH . P 5 HOH D 37 309 309 HOH HOH . P 5 HOH D 38 310 310 HOH HOH . P 5 HOH D 39 311 311 HOH HOH . P 5 HOH D 40 312 312 HOH HOH . P 5 HOH D 41 313 313 HOH HOH . P 5 HOH D 42 314 314 HOH HOH . P 5 HOH D 43 315 315 HOH HOH . P 5 HOH D 44 316 316 HOH HOH . P 5 HOH D 45 317 317 HOH HOH . P 5 HOH D 46 318 318 HOH HOH . P 5 HOH D 47 319 319 HOH HOH . P 5 HOH D 48 320 320 HOH HOH . P 5 HOH D 49 321 321 HOH HOH . P 5 HOH D 50 322 322 HOH HOH . P 5 HOH D 51 323 323 HOH HOH . P 5 HOH D 52 324 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KMP . . . H 3 -17.212 10.769 7.323 1 51.66 ? C1 KMP 272 B 1 HETATM 2 C C2 KMP . . . H 3 -17.981 11.885 7.655 1 51.85 ? C2 KMP 272 B 1 HETATM 3 C C3 KMP . . . H 3 -17.508 12.808 8.605 1 51.93 ? C3 KMP 272 B 1 HETATM 4 C C4 KMP . . . H 3 -16.275 12.594 9.241 1 51.75 ? C4 KMP 272 B 1 HETATM 5 C C5 KMP . . . H 3 -15.506 11.467 8.896 1 50.8 ? C5 KMP 272 B 1 HETATM 6 C C6 KMP . . . H 3 -15.976 10.555 7.935 1 51.31 ? C6 KMP 272 B 1 HETATM 7 C C9 KMP . . . H 3 -18.283 13.903 8.977 1 53.14 ? C9 KMP 272 B 1 HETATM 8 C C10 KMP . . . H 3 -17.872 14.719 10.029 1 53.96 ? C10 KMP 272 B 1 HETATM 9 C C11 KMP . . . H 3 -16.628 14.487 10.645 1 53.91 ? C11 KMP 272 B 1 HETATM 10 C C14 KMP . . . H 3 -16.166 15.317 11.684 1 55.53 ? C14 KMP 272 B 1 HETATM 11 C C15 KMP . . . H 3 -16.889 16.433 12.131 1 57.49 ? C15 KMP 272 B 1 HETATM 12 C C16 KMP . . . H 3 -16.401 17.249 13.161 1 60.32 ? C16 KMP 272 B 1 HETATM 13 C C17 KMP . . . H 3 -15.177 16.949 13.772 1 60.03 ? C17 KMP 272 B 1 HETATM 14 C C18 KMP . . . H 3 -14.457 15.831 13.34 1 58.78 ? C18 KMP 272 B 1 HETATM 15 C C19 KMP . . . H 3 -14.948 15.022 12.304 1 56.54 ? C19 KMP 272 B 1 HETATM 16 O O12 KMP . . . H 3 -15.803 13.473 10.193 1 52.2 ? O12 KMP 272 B 1 HETATM 17 O O13 KMP . . . H 3 -19.398 14.079 8.482 1 54.24 ? O13 KMP 272 B 1 HETATM 18 O O24 KMP . . . H 3 -14.683 17.732 14.775 1 61.17 ? O24 KMP 272 B 1 HETATM 19 O O27 KMP . . . H 3 -18.689 15.747 10.422 1 53.26 ? O27 KMP 272 B 1 HETATM 20 O O29 KMP . . . H 3 -15.26 9.444 7.57 1 51.39 ? O29 KMP 272 B 1 HETATM 21 O O30 KMP . . . H 3 -19.185 12.051 7.03 1 51.61 ? O30 KMP 272 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #