data_3QWJ # _model_server_result.job_id pRc0KISX0XVunQyOrqnuhg _model_server_result.datetime_utc '2025-01-02 23:55:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":483}' # _entry.id 3QWJ # _exptl.entry_id 3QWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.707 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(2-aminopyrimidin-5-yl)methyl]amino}-4-chloro-5-nitrobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QWJ _cell.length_a 53.33 _cell.length_b 71.48 _cell.length_c 71.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H11 Cl N6 O3' _chem_comp.formula_weight 322.707 _chem_comp.id X6A _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[(2-aminopyrimidin-5-yl)methyl]amino}-4-chloro-5-nitrobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C09 X6A sing 385 n n N01 C14 X6A sing 386 n n N01 HN01 X6A sing 387 n n N02 C13 X6A sing 388 n n N02 H102 X6A sing 389 n n N02 H202 X6A sing 390 n n N04 C17 X6A doub 391 n y N05 O20 X6A doub 392 n n N06 H106 X6A sing 393 n n N06 H206 X6A sing 394 n n C07 C12 X6A sing 395 n y C07 H07 X6A sing 396 n n C08 C07 X6A doub 397 n y C08 C09 X6A sing 398 n y C09 C10 X6A doub 399 n y C10 C11 X6A sing 400 n y C10 H10 X6A sing 401 n n C11 CL22 X6A sing 402 n n C12 N05 X6A sing 403 n n C12 C11 X6A doub 404 n y C13 C08 X6A sing 405 n n C14 C15 X6A sing 406 n n C14 H114 X6A sing 407 n n C14 H214 X6A sing 408 n n C15 C16 X6A sing 409 n y C16 N03 X6A doub 410 n y C16 H16 X6A sing 411 n n C17 N03 X6A sing 412 n y C17 N06 X6A sing 413 n n C18 C15 X6A doub 414 n y C18 N04 X6A sing 415 n y C18 H18 X6A sing 416 n n O19 C13 X6A doub 417 n n O21 N05 X6A sing 418 n n # _atom_sites.entry_id 3QWJ _atom_sites.fract_transf_matrix[1][1] 0.018751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 482 1 EDO EDO . C 3 X6A A 1 483 1 X6A X6A . D 4 HOH A 1 299 1 HOH HOH . D 4 HOH A 2 300 2 HOH HOH . D 4 HOH A 3 301 3 HOH HOH . D 4 HOH A 4 302 4 HOH HOH . D 4 HOH A 5 303 5 HOH HOH . D 4 HOH A 6 304 6 HOH HOH . D 4 HOH A 7 305 7 HOH HOH . D 4 HOH A 8 306 8 HOH HOH . D 4 HOH A 9 307 9 HOH HOH . D 4 HOH A 10 308 10 HOH HOH . D 4 HOH A 11 309 11 HOH HOH . D 4 HOH A 12 310 12 HOH HOH . D 4 HOH A 13 311 13 HOH HOH . D 4 HOH A 14 312 14 HOH HOH . D 4 HOH A 15 313 15 HOH HOH . D 4 HOH A 16 314 16 HOH HOH . D 4 HOH A 17 315 17 HOH HOH . D 4 HOH A 18 316 18 HOH HOH . D 4 HOH A 19 317 19 HOH HOH . D 4 HOH A 20 318 20 HOH HOH . D 4 HOH A 21 319 21 HOH HOH . D 4 HOH A 22 320 22 HOH HOH . D 4 HOH A 23 321 23 HOH HOH . D 4 HOH A 24 322 24 HOH HOH . D 4 HOH A 25 323 25 HOH HOH . D 4 HOH A 26 324 26 HOH HOH . D 4 HOH A 27 325 27 HOH HOH . D 4 HOH A 28 326 28 HOH HOH . D 4 HOH A 29 327 29 HOH HOH . D 4 HOH A 30 328 30 HOH HOH . D 4 HOH A 31 329 31 HOH HOH . D 4 HOH A 32 330 32 HOH HOH . D 4 HOH A 33 331 33 HOH HOH . D 4 HOH A 34 332 34 HOH HOH . D 4 HOH A 35 333 35 HOH HOH . D 4 HOH A 36 334 36 HOH HOH . D 4 HOH A 37 335 37 HOH HOH . D 4 HOH A 38 336 38 HOH HOH . D 4 HOH A 39 337 39 HOH HOH . D 4 HOH A 40 338 40 HOH HOH . D 4 HOH A 41 339 41 HOH HOH . D 4 HOH A 42 340 42 HOH HOH . D 4 HOH A 43 341 43 HOH HOH . D 4 HOH A 44 342 44 HOH HOH . D 4 HOH A 45 343 45 HOH HOH . D 4 HOH A 46 344 46 HOH HOH . D 4 HOH A 47 345 47 HOH HOH . D 4 HOH A 48 346 48 HOH HOH . D 4 HOH A 49 347 49 HOH HOH . D 4 HOH A 50 348 50 HOH HOH . D 4 HOH A 51 349 51 HOH HOH . D 4 HOH A 52 350 52 HOH HOH . D 4 HOH A 53 351 53 HOH HOH . D 4 HOH A 54 352 54 HOH HOH . D 4 HOH A 55 353 55 HOH HOH . D 4 HOH A 56 354 56 HOH HOH . D 4 HOH A 57 355 57 HOH HOH . D 4 HOH A 58 356 58 HOH HOH . D 4 HOH A 59 357 59 HOH HOH . D 4 HOH A 60 358 60 HOH HOH . D 4 HOH A 61 359 61 HOH HOH . D 4 HOH A 62 360 62 HOH HOH . D 4 HOH A 63 361 63 HOH HOH . D 4 HOH A 64 362 64 HOH HOH . D 4 HOH A 65 363 65 HOH HOH . D 4 HOH A 66 364 66 HOH HOH . D 4 HOH A 67 365 67 HOH HOH . D 4 HOH A 68 366 68 HOH HOH . D 4 HOH A 69 367 69 HOH HOH . D 4 HOH A 70 368 70 HOH HOH . D 4 HOH A 71 369 71 HOH HOH . D 4 HOH A 72 370 72 HOH HOH . D 4 HOH A 73 371 73 HOH HOH . D 4 HOH A 74 372 74 HOH HOH . D 4 HOH A 75 373 75 HOH HOH . D 4 HOH A 76 374 76 HOH HOH . D 4 HOH A 77 375 77 HOH HOH . D 4 HOH A 78 376 78 HOH HOH . D 4 HOH A 79 377 79 HOH HOH . D 4 HOH A 80 378 80 HOH HOH . D 4 HOH A 81 380 82 HOH HOH . D 4 HOH A 82 381 83 HOH HOH . D 4 HOH A 83 382 84 HOH HOH . D 4 HOH A 84 383 85 HOH HOH . D 4 HOH A 85 384 86 HOH HOH . D 4 HOH A 86 385 87 HOH HOH . D 4 HOH A 87 386 88 HOH HOH . D 4 HOH A 88 387 89 HOH HOH . D 4 HOH A 89 388 90 HOH HOH . D 4 HOH A 90 389 91 HOH HOH . D 4 HOH A 91 390 92 HOH HOH . D 4 HOH A 92 391 93 HOH HOH . D 4 HOH A 93 392 94 HOH HOH . D 4 HOH A 94 393 95 HOH HOH . D 4 HOH A 95 394 96 HOH HOH . D 4 HOH A 96 395 97 HOH HOH . D 4 HOH A 97 396 98 HOH HOH . D 4 HOH A 98 397 99 HOH HOH . D 4 HOH A 99 398 100 HOH HOH . D 4 HOH A 100 399 101 HOH HOH . D 4 HOH A 101 400 102 HOH HOH . D 4 HOH A 102 401 103 HOH HOH . D 4 HOH A 103 402 104 HOH HOH . D 4 HOH A 104 403 105 HOH HOH . D 4 HOH A 105 405 107 HOH HOH . D 4 HOH A 106 406 108 HOH HOH . D 4 HOH A 107 407 109 HOH HOH . D 4 HOH A 108 408 110 HOH HOH . D 4 HOH A 109 409 111 HOH HOH . D 4 HOH A 110 410 112 HOH HOH . D 4 HOH A 111 411 113 HOH HOH . D 4 HOH A 112 412 114 HOH HOH . D 4 HOH A 113 413 115 HOH HOH . D 4 HOH A 114 414 116 HOH HOH . D 4 HOH A 115 415 117 HOH HOH . D 4 HOH A 116 416 118 HOH HOH . D 4 HOH A 117 417 119 HOH HOH . D 4 HOH A 118 418 120 HOH HOH . D 4 HOH A 119 419 121 HOH HOH . D 4 HOH A 120 420 122 HOH HOH . D 4 HOH A 121 421 123 HOH HOH . D 4 HOH A 122 422 124 HOH HOH . D 4 HOH A 123 423 125 HOH HOH . D 4 HOH A 124 424 126 HOH HOH . D 4 HOH A 125 425 127 HOH HOH . D 4 HOH A 126 426 128 HOH HOH . D 4 HOH A 127 427 129 HOH HOH . D 4 HOH A 128 428 130 HOH HOH . D 4 HOH A 129 429 131 HOH HOH . D 4 HOH A 130 430 132 HOH HOH . D 4 HOH A 131 431 133 HOH HOH . D 4 HOH A 132 432 134 HOH HOH . D 4 HOH A 133 433 135 HOH HOH . D 4 HOH A 134 434 136 HOH HOH . D 4 HOH A 135 435 137 HOH HOH . D 4 HOH A 136 436 138 HOH HOH . D 4 HOH A 137 437 139 HOH HOH . D 4 HOH A 138 438 140 HOH HOH . D 4 HOH A 139 439 141 HOH HOH . D 4 HOH A 140 440 142 HOH HOH . D 4 HOH A 141 442 144 HOH HOH . D 4 HOH A 142 443 145 HOH HOH . D 4 HOH A 143 445 147 HOH HOH . D 4 HOH A 144 446 148 HOH HOH . D 4 HOH A 145 447 149 HOH HOH . D 4 HOH A 146 448 150 HOH HOH . D 4 HOH A 147 449 151 HOH HOH . D 4 HOH A 148 450 152 HOH HOH . D 4 HOH A 149 451 153 HOH HOH . D 4 HOH A 150 454 156 HOH HOH . D 4 HOH A 151 455 157 HOH HOH . D 4 HOH A 152 456 158 HOH HOH . D 4 HOH A 153 459 161 HOH HOH . D 4 HOH A 154 460 162 HOH HOH . D 4 HOH A 155 462 164 HOH HOH . D 4 HOH A 156 463 165 HOH HOH . D 4 HOH A 157 465 167 HOH HOH . D 4 HOH A 158 466 168 HOH HOH . D 4 HOH A 159 467 169 HOH HOH . D 4 HOH A 160 468 170 HOH HOH . D 4 HOH A 161 470 172 HOH HOH . D 4 HOH A 162 471 173 HOH HOH . D 4 HOH A 163 474 176 HOH HOH . D 4 HOH A 164 476 178 HOH HOH . D 4 HOH A 165 477 179 HOH HOH . D 4 HOH A 166 478 180 HOH HOH . D 4 HOH A 167 479 181 HOH HOH . D 4 HOH A 168 480 182 HOH HOH . D 4 HOH A 169 481 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X6A . . . C 3 -37.441 -81.846 -47.707 1 20.85 ? N01 X6A 483 A 1 HETATM 2 N N02 X6A . . . C 3 -40.051 -81.375 -50.853 1 18.56 ? N02 X6A 483 A 1 HETATM 3 N N03 X6A . . . C 3 -35.892 -82.993 -43.394 1 31.55 ? N03 X6A 483 A 1 HETATM 4 N N04 X6A . . . C 3 -35.764 -84.791 -45.01 1 29.53 ? N04 X6A 483 A 1 HETATM 5 N N05 X6A . . . C 3 -42.594 -80.171 -46.725 1 24.07 ? N05 X6A 483 A 1 HETATM 6 N N06 X6A . . . C 3 -35.61 -85.133 -42.79 1 31.56 ? N06 X6A 483 A 1 HETATM 7 C C07 X6A . . . C 3 -40.988 -81.009 -48.229 1 20.92 ? C07 X6A 483 A 1 HETATM 8 C C08 X6A . . . C 3 -39.652 -81.453 -48.513 1 20.71 ? C08 X6A 483 A 1 HETATM 9 C C09 X6A . . . C 3 -38.668 -81.451 -47.47 1 20.76 ? C09 X6A 483 A 1 HETATM 10 C C10 X6A . . . C 3 -39.055 -81.02 -46.171 1 21.88 ? C10 X6A 483 A 1 HETATM 11 C C11 X6A . . . C 3 -40.363 -80.592 -45.888 1 22.43 ? C11 X6A 483 A 1 HETATM 12 C C12 X6A . . . C 3 -41.368 -80.57 -46.926 1 23.47 ? C12 X6A 483 A 1 HETATM 13 C C13 X6A . . . C 3 -39.356 -81.875 -49.786 1 18.99 ? C13 X6A 483 A 1 HETATM 14 C C14 X6A . . . C 3 -36.264 -81.477 -46.868 1 24.86 ? C14 X6A 483 A 1 HETATM 15 C C15 X6A . . . C 3 -36.076 -82.489 -45.77 1 27.31 ? C15 X6A 483 A 1 HETATM 16 C C16 X6A . . . C 3 -36.048 -82.117 -44.423 1 30.04 ? C16 X6A 483 A 1 HETATM 17 C C17 X6A . . . C 3 -35.756 -84.302 -43.737 1 30.57 ? C17 X6A 483 A 1 HETATM 18 C C18 X6A . . . C 3 -35.927 -83.861 -46.007 1 28.21 ? C18 X6A 483 A 1 HETATM 19 O O19 X6A . . . C 3 -38.491 -82.71 -49.974 1 16.46 ? O19 X6A 483 A 1 HETATM 20 O O20 X6A . . . C 3 -43.007 -79.737 -45.561 1 28.42 ? O20 X6A 483 A 1 HETATM 21 O O21 X6A . . . C 3 -43.465 -80.186 -47.7 1 25.47 ? O21 X6A 483 A 1 HETATM 22 CL CL22 X6A . . . C 3 -40.677 -80.129 -44.282 1 26.16 ? CL22 X6A 483 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #