data_3QWK # _model_server_result.job_id FGP0rlvE8GjHXeGlrrLU7A _model_server_result.datetime_utc '2024-12-26 13:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":493}' # _entry.id 3QWK # _exptl.entry_id 3QWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.138 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-2-{[(2-chloropyrimidin-5-yl)methyl]amino}-5-nitrobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QWK _cell.length_a 53.53 _cell.length_b 71.62 _cell.length_c 72.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H9 Cl2 N5 O3' _chem_comp.formula_weight 342.138 _chem_comp.id X62 _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-2-{[(2-chloropyrimidin-5-yl)methyl]amino}-5-nitrobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C08 X62 sing 385 n n N01 C13 X62 sing 386 n n N01 HN01 X62 sing 387 n n N02 C12 X62 sing 388 n n N02 H102 X62 sing 389 n n N02 H202 X62 sing 390 n n N03 C16 X62 doub 391 n y N05 O20 X62 doub 392 n n C06 C11 X62 sing 393 n y C06 H06 X62 sing 394 n n C07 C06 X62 doub 395 n y C07 C08 X62 sing 396 n y C08 C09 X62 doub 397 n y C09 C10 X62 sing 398 n y C09 H09 X62 sing 399 n n C10 CL21 X62 sing 400 n n C11 N05 X62 sing 401 n n C11 C10 X62 doub 402 n y C12 C07 X62 sing 403 n n C13 C14 X62 sing 404 n n C13 H113 X62 sing 405 n n C13 H213 X62 sing 406 n n C14 C17 X62 sing 407 n y C15 C14 X62 doub 408 n y C15 N03 X62 sing 409 n y C15 H15 X62 sing 410 n n C16 N04 X62 sing 411 n y C16 CL22 X62 sing 412 n n C17 N04 X62 doub 413 n y C17 H17 X62 sing 414 n n O18 C12 X62 doub 415 n n O19 N05 X62 sing 416 n n # _atom_sites.entry_id 3QWK _atom_sites.fract_transf_matrix[1][1] 0.018681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 489 1 EDO EDO . C 2 EDO A 1 490 2 EDO EDO . D 2 EDO A 1 491 3 EDO EDO . E 2 EDO A 1 492 4 EDO EDO . F 3 X62 A 1 493 1 X62 X62 . G 4 HOH A 1 299 1 HOH HOH . G 4 HOH A 2 300 2 HOH HOH . G 4 HOH A 3 301 3 HOH HOH . G 4 HOH A 4 302 4 HOH HOH . G 4 HOH A 5 303 5 HOH HOH . G 4 HOH A 6 304 6 HOH HOH . G 4 HOH A 7 305 7 HOH HOH . G 4 HOH A 8 306 8 HOH HOH . G 4 HOH A 9 307 9 HOH HOH . G 4 HOH A 10 308 10 HOH HOH . G 4 HOH A 11 309 11 HOH HOH . G 4 HOH A 12 310 12 HOH HOH . G 4 HOH A 13 311 13 HOH HOH . G 4 HOH A 14 312 14 HOH HOH . G 4 HOH A 15 313 15 HOH HOH . G 4 HOH A 16 314 16 HOH HOH . G 4 HOH A 17 315 17 HOH HOH . G 4 HOH A 18 316 18 HOH HOH . G 4 HOH A 19 317 19 HOH HOH . G 4 HOH A 20 318 20 HOH HOH . G 4 HOH A 21 319 21 HOH HOH . G 4 HOH A 22 320 22 HOH HOH . G 4 HOH A 23 321 23 HOH HOH . G 4 HOH A 24 322 24 HOH HOH . G 4 HOH A 25 323 25 HOH HOH . G 4 HOH A 26 324 26 HOH HOH . G 4 HOH A 27 325 27 HOH HOH . G 4 HOH A 28 326 28 HOH HOH . G 4 HOH A 29 327 29 HOH HOH . G 4 HOH A 30 328 30 HOH HOH . G 4 HOH A 31 329 31 HOH HOH . G 4 HOH A 32 330 32 HOH HOH . G 4 HOH A 33 331 33 HOH HOH . G 4 HOH A 34 332 34 HOH HOH . G 4 HOH A 35 333 35 HOH HOH . G 4 HOH A 36 334 36 HOH HOH . G 4 HOH A 37 335 37 HOH HOH . G 4 HOH A 38 336 38 HOH HOH . G 4 HOH A 39 337 39 HOH HOH . G 4 HOH A 40 338 40 HOH HOH . G 4 HOH A 41 339 41 HOH HOH . G 4 HOH A 42 340 42 HOH HOH . G 4 HOH A 43 341 43 HOH HOH . G 4 HOH A 44 342 44 HOH HOH . G 4 HOH A 45 343 45 HOH HOH . G 4 HOH A 46 344 46 HOH HOH . G 4 HOH A 47 345 47 HOH HOH . G 4 HOH A 48 346 48 HOH HOH . G 4 HOH A 49 347 49 HOH HOH . G 4 HOH A 50 348 50 HOH HOH . G 4 HOH A 51 349 51 HOH HOH . G 4 HOH A 52 350 52 HOH HOH . G 4 HOH A 53 351 53 HOH HOH . G 4 HOH A 54 352 54 HOH HOH . G 4 HOH A 55 353 55 HOH HOH . G 4 HOH A 56 354 56 HOH HOH . G 4 HOH A 57 355 57 HOH HOH . G 4 HOH A 58 356 58 HOH HOH . G 4 HOH A 59 357 59 HOH HOH . G 4 HOH A 60 358 60 HOH HOH . G 4 HOH A 61 359 61 HOH HOH . G 4 HOH A 62 360 62 HOH HOH . G 4 HOH A 63 361 63 HOH HOH . G 4 HOH A 64 362 64 HOH HOH . G 4 HOH A 65 363 65 HOH HOH . G 4 HOH A 66 364 66 HOH HOH . G 4 HOH A 67 365 67 HOH HOH . G 4 HOH A 68 366 68 HOH HOH . G 4 HOH A 69 367 69 HOH HOH . G 4 HOH A 70 368 70 HOH HOH . G 4 HOH A 71 369 71 HOH HOH . G 4 HOH A 72 370 72 HOH HOH . G 4 HOH A 73 371 73 HOH HOH . G 4 HOH A 74 373 75 HOH HOH . G 4 HOH A 75 374 76 HOH HOH . G 4 HOH A 76 375 77 HOH HOH . G 4 HOH A 77 376 78 HOH HOH . G 4 HOH A 78 377 79 HOH HOH . G 4 HOH A 79 378 80 HOH HOH . G 4 HOH A 80 379 81 HOH HOH . G 4 HOH A 81 380 82 HOH HOH . G 4 HOH A 82 381 83 HOH HOH . G 4 HOH A 83 382 84 HOH HOH . G 4 HOH A 84 383 85 HOH HOH . G 4 HOH A 85 384 86 HOH HOH . G 4 HOH A 86 385 87 HOH HOH . G 4 HOH A 87 387 89 HOH HOH . G 4 HOH A 88 389 91 HOH HOH . G 4 HOH A 89 390 92 HOH HOH . G 4 HOH A 90 391 93 HOH HOH . G 4 HOH A 91 392 94 HOH HOH . G 4 HOH A 92 393 95 HOH HOH . G 4 HOH A 93 394 96 HOH HOH . G 4 HOH A 94 395 97 HOH HOH . G 4 HOH A 95 396 98 HOH HOH . G 4 HOH A 96 398 100 HOH HOH . G 4 HOH A 97 399 101 HOH HOH . G 4 HOH A 98 400 102 HOH HOH . G 4 HOH A 99 401 103 HOH HOH . G 4 HOH A 100 402 104 HOH HOH . G 4 HOH A 101 403 105 HOH HOH . G 4 HOH A 102 404 106 HOH HOH . G 4 HOH A 103 405 107 HOH HOH . G 4 HOH A 104 406 108 HOH HOH . G 4 HOH A 105 407 109 HOH HOH . G 4 HOH A 106 408 110 HOH HOH . G 4 HOH A 107 409 111 HOH HOH . G 4 HOH A 108 410 112 HOH HOH . G 4 HOH A 109 411 113 HOH HOH . G 4 HOH A 110 412 114 HOH HOH . G 4 HOH A 111 413 115 HOH HOH . G 4 HOH A 112 414 116 HOH HOH . G 4 HOH A 113 415 117 HOH HOH . G 4 HOH A 114 418 120 HOH HOH . G 4 HOH A 115 419 121 HOH HOH . G 4 HOH A 116 420 122 HOH HOH . G 4 HOH A 117 421 123 HOH HOH . G 4 HOH A 118 424 126 HOH HOH . G 4 HOH A 119 425 127 HOH HOH . G 4 HOH A 120 426 128 HOH HOH . G 4 HOH A 121 427 129 HOH HOH . G 4 HOH A 122 428 130 HOH HOH . G 4 HOH A 123 429 131 HOH HOH . G 4 HOH A 124 430 132 HOH HOH . G 4 HOH A 125 431 133 HOH HOH . G 4 HOH A 126 432 134 HOH HOH . G 4 HOH A 127 434 136 HOH HOH . G 4 HOH A 128 435 137 HOH HOH . G 4 HOH A 129 436 138 HOH HOH . G 4 HOH A 130 437 139 HOH HOH . G 4 HOH A 131 438 140 HOH HOH . G 4 HOH A 132 439 141 HOH HOH . G 4 HOH A 133 440 142 HOH HOH . G 4 HOH A 134 441 143 HOH HOH . G 4 HOH A 135 442 144 HOH HOH . G 4 HOH A 136 443 145 HOH HOH . G 4 HOH A 137 444 146 HOH HOH . G 4 HOH A 138 445 147 HOH HOH . G 4 HOH A 139 446 148 HOH HOH . G 4 HOH A 140 447 149 HOH HOH . G 4 HOH A 141 448 150 HOH HOH . G 4 HOH A 142 449 151 HOH HOH . G 4 HOH A 143 450 152 HOH HOH . G 4 HOH A 144 451 153 HOH HOH . G 4 HOH A 145 452 154 HOH HOH . G 4 HOH A 146 453 155 HOH HOH . G 4 HOH A 147 454 156 HOH HOH . G 4 HOH A 148 455 157 HOH HOH . G 4 HOH A 149 456 158 HOH HOH . G 4 HOH A 150 458 160 HOH HOH . G 4 HOH A 151 459 161 HOH HOH . G 4 HOH A 152 460 162 HOH HOH . G 4 HOH A 153 461 163 HOH HOH . G 4 HOH A 154 462 164 HOH HOH . G 4 HOH A 155 463 165 HOH HOH . G 4 HOH A 156 464 166 HOH HOH . G 4 HOH A 157 468 170 HOH HOH . G 4 HOH A 158 469 171 HOH HOH . G 4 HOH A 159 470 172 HOH HOH . G 4 HOH A 160 471 173 HOH HOH . G 4 HOH A 161 472 174 HOH HOH . G 4 HOH A 162 473 175 HOH HOH . G 4 HOH A 163 474 176 HOH HOH . G 4 HOH A 164 475 177 HOH HOH . G 4 HOH A 165 480 182 HOH HOH . G 4 HOH A 166 482 184 HOH HOH . G 4 HOH A 167 483 185 HOH HOH . G 4 HOH A 168 484 186 HOH HOH . G 4 HOH A 169 485 187 HOH HOH . G 4 HOH A 170 486 188 HOH HOH . G 4 HOH A 171 487 189 HOH HOH . G 4 HOH A 172 488 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X62 . . . F 3 -64.404 25.41 -84.147 1 18.62 ? N01 X62 493 A 1 HETATM 2 N N02 X62 . . . F 3 -67.016 25.955 -87.243 1 15.22 ? N02 X62 493 A 1 HETATM 3 N N03 X62 . . . F 3 -62.774 22.273 -81.889 1 31.71 ? N03 X62 493 A 1 HETATM 4 N N04 X62 . . . F 3 -62.047 23.876 -80.246 1 32.76 ? N04 X62 493 A 1 HETATM 5 N N05 X62 . . . F 3 -69.495 27.106 -83.031 1 22.76 ? N05 X62 493 A 1 HETATM 6 C C06 X62 . . . F 3 -67.933 26.293 -84.587 1 19.71 ? C06 X62 493 A 1 HETATM 7 C C07 X62 . . . F 3 -66.607 25.838 -84.906 1 18.46 ? C07 X62 493 A 1 HETATM 8 C C08 X62 . . . F 3 -65.608 25.806 -83.878 1 18.75 ? C08 X62 493 A 1 HETATM 9 C C09 X62 . . . F 3 -65.961 26.206 -82.55 1 19.77 ? C09 X62 493 A 1 HETATM 10 C C10 X62 . . . F 3 -67.264 26.64 -82.234 1 20.85 ? C10 X62 493 A 1 HETATM 11 C C11 X62 . . . F 3 -68.282 26.702 -83.263 1 20.5 ? C11 X62 493 A 1 HETATM 12 C C12 X62 . . . F 3 -66.326 25.434 -86.191 1 16.93 ? C12 X62 493 A 1 HETATM 13 C C13 X62 . . . F 3 -63.218 25.785 -83.335 1 23.31 ? C13 X62 493 A 1 HETATM 14 C C14 X62 . . . F 3 -62.881 24.661 -82.392 1 26.91 ? C14 X62 493 A 1 HETATM 15 C C15 X62 . . . F 3 -63.07 23.31 -82.724 1 28.63 ? C15 X62 493 A 1 HETATM 16 C C16 X62 . . . F 3 -62.271 22.609 -80.681 1 33.56 ? C16 X62 493 A 1 HETATM 17 C C17 X62 . . . F 3 -62.361 24.881 -81.121 1 30.08 ? C17 X62 493 A 1 HETATM 18 O O18 X62 . . . F 3 -65.489 24.563 -86.397 1 15.93 ? O18 X62 493 A 1 HETATM 19 O O19 X62 . . . F 3 -70.483 26.698 -83.78 1 23.79 ? O19 X62 493 A 1 HETATM 20 O O20 X62 . . . F 3 -69.771 27.967 -82.071 1 25.73 ? O20 X62 493 A 1 HETATM 21 CL CL21 X62 . . . F 3 -67.566 27.07 -80.604 1 22.07 ? CL21 X62 493 A 1 HETATM 22 CL CL22 X62 . . . F 3 -61.883 21.32 -79.613 1 42.09 ? CL22 X62 493 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #