data_3QWU # _model_server_result.job_id OFLZ46mBWnghQi15tOyIQA _model_server_result.datetime_utc '2024-11-04 22:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 3QWU # _exptl.entry_id 3QWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QWU _cell.length_a 91.366 _cell.length_b 99.165 _cell.length_c 103.278 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 82 A ASP 79 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 A OE1 GLU 143 A GLU 140 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc3 A OD1 ASP 239 A ASP 236 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc4 I O HOH . A HOH 398 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 I O HOH . A HOH 410 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 B OD2 ASP 82 B ASP 79 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc7 B OE1 GLU 143 B GLU 140 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 B OD1 ASP 239 B ASP 236 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 J O HOH . B HOH 412 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 3QWU _atom_sites.fract_transf_matrix[1][1] 0.010945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADN A 1 501 501 ADN ADN . D 3 CA A 1 601 601 CA CA . E 4 GOL A 1 603 603 GOL GOL . F 2 ADN B 1 501 501 ADN ADN . G 3 CA B 1 602 602 CA CA . H 4 GOL B 1 604 604 GOL GOL . I 5 HOH A 1 368 1 HOH HOH . I 5 HOH A 2 369 3 HOH HOH . I 5 HOH A 3 370 5 HOH HOH . I 5 HOH A 4 371 6 HOH HOH . I 5 HOH A 5 372 7 HOH HOH . I 5 HOH A 6 373 8 HOH HOH . I 5 HOH A 7 374 11 HOH HOH . I 5 HOH A 8 375 12 HOH HOH . I 5 HOH A 9 376 14 HOH HOH . I 5 HOH A 10 377 16 HOH HOH . I 5 HOH A 11 378 18 HOH HOH . I 5 HOH A 12 379 19 HOH HOH . I 5 HOH A 13 380 22 HOH HOH . I 5 HOH A 14 381 23 HOH HOH . I 5 HOH A 15 382 24 HOH HOH . I 5 HOH A 16 383 26 HOH HOH . I 5 HOH A 17 384 27 HOH HOH . I 5 HOH A 18 385 28 HOH HOH . I 5 HOH A 19 386 34 HOH HOH . I 5 HOH A 20 387 36 HOH HOH . I 5 HOH A 21 388 38 HOH HOH . I 5 HOH A 22 389 39 HOH HOH . I 5 HOH A 23 390 40 HOH HOH . I 5 HOH A 24 391 41 HOH HOH . I 5 HOH A 25 392 42 HOH HOH . I 5 HOH A 26 393 45 HOH HOH . I 5 HOH A 27 394 47 HOH HOH . I 5 HOH A 28 395 51 HOH HOH . I 5 HOH A 29 396 52 HOH HOH . I 5 HOH A 30 397 53 HOH HOH . I 5 HOH A 31 398 57 HOH HOH . I 5 HOH A 32 399 59 HOH HOH . I 5 HOH A 33 400 61 HOH HOH . I 5 HOH A 34 401 62 HOH HOH . I 5 HOH A 35 402 63 HOH HOH . I 5 HOH A 36 403 65 HOH HOH . I 5 HOH A 37 404 68 HOH HOH . I 5 HOH A 38 405 70 HOH HOH . I 5 HOH A 39 406 71 HOH HOH . I 5 HOH A 40 407 72 HOH HOH . I 5 HOH A 41 408 73 HOH HOH . I 5 HOH A 42 409 74 HOH HOH . I 5 HOH A 43 410 78 HOH HOH . I 5 HOH A 44 411 79 HOH HOH . I 5 HOH A 45 412 80 HOH HOH . I 5 HOH A 46 413 82 HOH HOH . I 5 HOH A 47 414 83 HOH HOH . I 5 HOH A 48 415 90 HOH HOH . I 5 HOH A 49 416 91 HOH HOH . I 5 HOH A 50 417 92 HOH HOH . I 5 HOH A 51 418 94 HOH HOH . I 5 HOH A 52 419 95 HOH HOH . I 5 HOH A 53 420 96 HOH HOH . I 5 HOH A 54 421 97 HOH HOH . I 5 HOH A 55 422 102 HOH HOH . I 5 HOH A 56 423 105 HOH HOH . I 5 HOH A 57 424 106 HOH HOH . I 5 HOH A 58 425 107 HOH HOH . I 5 HOH A 59 426 108 HOH HOH . I 5 HOH A 60 427 109 HOH HOH . I 5 HOH A 61 428 110 HOH HOH . I 5 HOH A 62 429 111 HOH HOH . I 5 HOH A 63 430 112 HOH HOH . I 5 HOH A 64 431 114 HOH HOH . I 5 HOH A 65 432 117 HOH HOH . I 5 HOH A 66 433 120 HOH HOH . I 5 HOH A 67 434 122 HOH HOH . I 5 HOH A 68 435 123 HOH HOH . I 5 HOH A 69 436 127 HOH HOH . J 5 HOH B 1 368 2 HOH HOH . J 5 HOH B 2 369 4 HOH HOH . J 5 HOH B 3 370 9 HOH HOH . J 5 HOH B 4 371 10 HOH HOH . J 5 HOH B 5 372 13 HOH HOH . J 5 HOH B 6 373 15 HOH HOH . J 5 HOH B 7 374 17 HOH HOH . J 5 HOH B 8 375 20 HOH HOH . J 5 HOH B 9 376 21 HOH HOH . J 5 HOH B 10 377 25 HOH HOH . J 5 HOH B 11 378 29 HOH HOH . J 5 HOH B 12 379 30 HOH HOH . J 5 HOH B 13 380 31 HOH HOH . J 5 HOH B 14 381 32 HOH HOH . J 5 HOH B 15 382 33 HOH HOH . J 5 HOH B 16 383 35 HOH HOH . J 5 HOH B 17 384 37 HOH HOH . J 5 HOH B 18 385 43 HOH HOH . J 5 HOH B 19 386 44 HOH HOH . J 5 HOH B 20 387 46 HOH HOH . J 5 HOH B 21 388 48 HOH HOH . J 5 HOH B 22 389 49 HOH HOH . J 5 HOH B 23 390 50 HOH HOH . J 5 HOH B 24 391 54 HOH HOH . J 5 HOH B 25 392 55 HOH HOH . J 5 HOH B 26 393 56 HOH HOH . J 5 HOH B 27 394 58 HOH HOH . J 5 HOH B 28 395 60 HOH HOH . J 5 HOH B 29 396 64 HOH HOH . J 5 HOH B 30 397 66 HOH HOH . J 5 HOH B 31 398 67 HOH HOH . J 5 HOH B 32 399 69 HOH HOH . J 5 HOH B 33 400 75 HOH HOH . J 5 HOH B 34 401 76 HOH HOH . J 5 HOH B 35 402 77 HOH HOH . J 5 HOH B 36 403 81 HOH HOH . J 5 HOH B 37 404 84 HOH HOH . J 5 HOH B 38 405 85 HOH HOH . J 5 HOH B 39 406 86 HOH HOH . J 5 HOH B 40 407 87 HOH HOH . J 5 HOH B 41 408 89 HOH HOH . J 5 HOH B 42 409 93 HOH HOH . J 5 HOH B 43 410 98 HOH HOH . J 5 HOH B 44 411 99 HOH HOH . J 5 HOH B 45 412 100 HOH HOH . J 5 HOH B 46 413 101 HOH HOH . J 5 HOH B 47 414 103 HOH HOH . J 5 HOH B 48 415 104 HOH HOH . J 5 HOH B 49 416 113 HOH HOH . J 5 HOH B 50 417 115 HOH HOH . J 5 HOH B 51 418 116 HOH HOH . J 5 HOH B 52 419 118 HOH HOH . J 5 HOH B 53 420 119 HOH HOH . J 5 HOH B 54 421 121 HOH HOH . J 5 HOH B 55 422 124 HOH HOH . J 5 HOH B 56 423 125 HOH HOH . J 5 HOH B 57 424 126 HOH HOH . J 5 HOH B 58 425 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . F 2 5.378 17.474 26.304 1 69.94 ? O5' ADN 501 B 1 HETATM 2 C C5' ADN . . . F 2 5.056 17.19 24.906 1 65.8 ? C5' ADN 501 B 1 HETATM 3 C C4' ADN . . . F 2 3.904 18.063 24.376 1 63.17 ? C4' ADN 501 B 1 HETATM 4 O O4' ADN . . . F 2 3.314 17.583 23.145 1 59.42 ? O4' ADN 501 B 1 HETATM 5 C C3' ADN . . . F 2 2.728 18.134 25.345 1 63.02 ? C3' ADN 501 B 1 HETATM 6 O O3' ADN . . . F 2 2.804 19.295 26.162 1 66.88 ? O3' ADN 501 B 1 HETATM 7 C C2' ADN . . . F 2 1.476 18.218 24.491 1 59.09 ? C2' ADN 501 B 1 HETATM 8 O O2' ADN . . . F 2 0.972 19.533 24.585 1 55.45 ? O2' ADN 501 B 1 HETATM 9 C C1' ADN . . . F 2 1.91 17.901 23.08 1 56.93 ? C1' ADN 501 B 1 HETATM 10 N N9 ADN . . . F 2 1.168 16.751 22.502 1 56.25 ? N9 ADN 501 B 1 HETATM 11 C C8 ADN . . . F 2 0.533 16.748 21.282 1 52.49 ? C8 ADN 501 B 1 HETATM 12 N N7 ADN . . . F 2 -0.038 15.54 21.036 1 50.74 ? N7 ADN 501 B 1 HETATM 13 C C5 ADN . . . F 2 0.251 14.737 22.1 1 53.37 ? C5 ADN 501 B 1 HETATM 14 C C6 ADN . . . F 2 -0.064 13.337 22.536 1 54.09 ? C6 ADN 501 B 1 HETATM 15 N N6 ADN . . . F 2 -0.77 12.508 21.741 1 54.42 ? N6 ADN 501 B 1 HETATM 16 N N1 ADN . . . F 2 0.394 12.898 23.745 1 55.55 ? N1 ADN 501 B 1 HETATM 17 C C2 ADN . . . F 2 1.112 13.717 24.56 1 56.89 ? C2 ADN 501 B 1 HETATM 18 N N3 ADN . . . F 2 1.425 14.999 24.236 1 54.64 ? N3 ADN 501 B 1 HETATM 19 C C4 ADN . . . F 2 1.04 15.547 23.062 1 53.4 ? C4 ADN 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #