data_3QX4 # _model_server_result.job_id lyx7SIE8WudMbfUYEnDEtA _model_server_result.datetime_utc '2024-12-26 23:33:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":454}' # _entry.id 3QX4 # _exptl.entry_id 3QX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.704 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QX4 _cell.length_a 53.16 _cell.length_b 71.28 _cell.length_c 71.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 Cl N4 O3' _chem_comp.formula_weight 306.704 _chem_comp.id X4B _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C11 X4B sing 385 n n N01 H101 X4B sing 386 n n N01 H201 X4B sing 387 n n N02 C07 X4B sing 388 n n N02 C12 X4B sing 389 n n N02 HN02 X4B sing 390 n n N04 O20 X4B doub 391 n n C05 C10 X4B sing 392 n y C05 H05 X4B sing 393 n n C06 C05 X4B doub 394 n y C06 C07 X4B sing 395 n y C07 C08 X4B doub 396 n y C08 C09 X4B sing 397 n y C08 H08 X4B sing 398 n n C09 CL21 X4B sing 399 n n C10 N04 X4B sing 400 n n C10 C09 X4B doub 401 n y C11 C06 X4B sing 402 n n C12 C13 X4B sing 403 n n C12 H112 X4B sing 404 n n C12 H212 X4B sing 405 n n C13 C14 X4B sing 406 n y C14 N03 X4B doub 407 n y C14 H14 X4B sing 408 n n C15 N03 X4B sing 409 n y C15 H15 X4B sing 410 n n C16 C15 X4B doub 411 n y C16 H16 X4B sing 412 n n C17 C13 X4B doub 413 n y C17 C16 X4B sing 414 n y C17 H17 X4B sing 415 n n O18 C11 X4B doub 416 n n O19 N04 X4B sing 417 n n # _atom_sites.entry_id 3QX4 _atom_sites.fract_transf_matrix[1][1] 0.018811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 452 1 EDO EDO . C 2 EDO A 1 453 2 EDO EDO . D 3 X4B A 1 454 1 X4B X4B . E 4 HOH A 1 299 1 HOH HOH . E 4 HOH A 2 300 2 HOH HOH . E 4 HOH A 3 301 3 HOH HOH . E 4 HOH A 4 302 4 HOH HOH . E 4 HOH A 5 303 5 HOH HOH . E 4 HOH A 6 304 6 HOH HOH . E 4 HOH A 7 305 7 HOH HOH . E 4 HOH A 8 306 8 HOH HOH . E 4 HOH A 9 307 9 HOH HOH . E 4 HOH A 10 308 10 HOH HOH . E 4 HOH A 11 309 11 HOH HOH . E 4 HOH A 12 310 12 HOH HOH . E 4 HOH A 13 311 13 HOH HOH . E 4 HOH A 14 312 14 HOH HOH . E 4 HOH A 15 313 15 HOH HOH . E 4 HOH A 16 314 16 HOH HOH . E 4 HOH A 17 315 17 HOH HOH . E 4 HOH A 18 316 18 HOH HOH . E 4 HOH A 19 317 19 HOH HOH . E 4 HOH A 20 318 20 HOH HOH . E 4 HOH A 21 319 21 HOH HOH . E 4 HOH A 22 320 22 HOH HOH . E 4 HOH A 23 321 23 HOH HOH . E 4 HOH A 24 322 24 HOH HOH . E 4 HOH A 25 323 25 HOH HOH . E 4 HOH A 26 324 26 HOH HOH . E 4 HOH A 27 325 27 HOH HOH . E 4 HOH A 28 326 28 HOH HOH . E 4 HOH A 29 327 29 HOH HOH . E 4 HOH A 30 328 30 HOH HOH . E 4 HOH A 31 329 31 HOH HOH . E 4 HOH A 32 330 32 HOH HOH . E 4 HOH A 33 331 33 HOH HOH . E 4 HOH A 34 332 34 HOH HOH . E 4 HOH A 35 334 36 HOH HOH . E 4 HOH A 36 335 37 HOH HOH . E 4 HOH A 37 336 38 HOH HOH . E 4 HOH A 38 337 39 HOH HOH . E 4 HOH A 39 338 40 HOH HOH . E 4 HOH A 40 339 41 HOH HOH . E 4 HOH A 41 340 42 HOH HOH . E 4 HOH A 42 341 43 HOH HOH . E 4 HOH A 43 342 44 HOH HOH . E 4 HOH A 44 343 45 HOH HOH . E 4 HOH A 45 344 46 HOH HOH . E 4 HOH A 46 345 47 HOH HOH . E 4 HOH A 47 346 48 HOH HOH . E 4 HOH A 48 348 50 HOH HOH . E 4 HOH A 49 349 51 HOH HOH . E 4 HOH A 50 350 52 HOH HOH . E 4 HOH A 51 351 53 HOH HOH . E 4 HOH A 52 352 54 HOH HOH . E 4 HOH A 53 353 55 HOH HOH . E 4 HOH A 54 354 56 HOH HOH . E 4 HOH A 55 357 59 HOH HOH . E 4 HOH A 56 358 60 HOH HOH . E 4 HOH A 57 359 61 HOH HOH . E 4 HOH A 58 360 62 HOH HOH . E 4 HOH A 59 361 63 HOH HOH . E 4 HOH A 60 362 64 HOH HOH . E 4 HOH A 61 363 65 HOH HOH . E 4 HOH A 62 364 66 HOH HOH . E 4 HOH A 63 365 67 HOH HOH . E 4 HOH A 64 366 68 HOH HOH . E 4 HOH A 65 367 69 HOH HOH . E 4 HOH A 66 368 70 HOH HOH . E 4 HOH A 67 369 71 HOH HOH . E 4 HOH A 68 370 72 HOH HOH . E 4 HOH A 69 371 73 HOH HOH . E 4 HOH A 70 372 74 HOH HOH . E 4 HOH A 71 373 75 HOH HOH . E 4 HOH A 72 374 76 HOH HOH . E 4 HOH A 73 375 77 HOH HOH . E 4 HOH A 74 376 78 HOH HOH . E 4 HOH A 75 377 79 HOH HOH . E 4 HOH A 76 379 81 HOH HOH . E 4 HOH A 77 380 82 HOH HOH . E 4 HOH A 78 382 84 HOH HOH . E 4 HOH A 79 383 85 HOH HOH . E 4 HOH A 80 384 86 HOH HOH . E 4 HOH A 81 385 87 HOH HOH . E 4 HOH A 82 386 88 HOH HOH . E 4 HOH A 83 387 89 HOH HOH . E 4 HOH A 84 388 90 HOH HOH . E 4 HOH A 85 389 91 HOH HOH . E 4 HOH A 86 390 92 HOH HOH . E 4 HOH A 87 391 93 HOH HOH . E 4 HOH A 88 392 94 HOH HOH . E 4 HOH A 89 393 95 HOH HOH . E 4 HOH A 90 394 96 HOH HOH . E 4 HOH A 91 395 97 HOH HOH . E 4 HOH A 92 396 98 HOH HOH . E 4 HOH A 93 397 99 HOH HOH . E 4 HOH A 94 398 100 HOH HOH . E 4 HOH A 95 399 101 HOH HOH . E 4 HOH A 96 400 102 HOH HOH . E 4 HOH A 97 401 103 HOH HOH . E 4 HOH A 98 402 104 HOH HOH . E 4 HOH A 99 403 105 HOH HOH . E 4 HOH A 100 404 106 HOH HOH . E 4 HOH A 101 405 107 HOH HOH . E 4 HOH A 102 406 108 HOH HOH . E 4 HOH A 103 407 109 HOH HOH . E 4 HOH A 104 408 110 HOH HOH . E 4 HOH A 105 409 111 HOH HOH . E 4 HOH A 106 410 112 HOH HOH . E 4 HOH A 107 411 113 HOH HOH . E 4 HOH A 108 412 114 HOH HOH . E 4 HOH A 109 413 115 HOH HOH . E 4 HOH A 110 416 118 HOH HOH . E 4 HOH A 111 417 119 HOH HOH . E 4 HOH A 112 418 120 HOH HOH . E 4 HOH A 113 419 121 HOH HOH . E 4 HOH A 114 420 122 HOH HOH . E 4 HOH A 115 421 123 HOH HOH . E 4 HOH A 116 422 124 HOH HOH . E 4 HOH A 117 423 125 HOH HOH . E 4 HOH A 118 424 126 HOH HOH . E 4 HOH A 119 425 127 HOH HOH . E 4 HOH A 120 426 128 HOH HOH . E 4 HOH A 121 427 129 HOH HOH . E 4 HOH A 122 428 130 HOH HOH . E 4 HOH A 123 429 131 HOH HOH . E 4 HOH A 124 430 132 HOH HOH . E 4 HOH A 125 431 133 HOH HOH . E 4 HOH A 126 433 135 HOH HOH . E 4 HOH A 127 435 137 HOH HOH . E 4 HOH A 128 436 138 HOH HOH . E 4 HOH A 129 438 140 HOH HOH . E 4 HOH A 130 439 141 HOH HOH . E 4 HOH A 131 440 142 HOH HOH . E 4 HOH A 132 441 143 HOH HOH . E 4 HOH A 133 442 144 HOH HOH . E 4 HOH A 134 443 145 HOH HOH . E 4 HOH A 135 444 146 HOH HOH . E 4 HOH A 136 446 148 HOH HOH . E 4 HOH A 137 447 149 HOH HOH . E 4 HOH A 138 448 150 HOH HOH . E 4 HOH A 139 449 151 HOH HOH . E 4 HOH A 140 450 152 HOH HOH . E 4 HOH A 141 451 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X4B . . . D 3 39.857 81.154 -51.045 1 18.96 ? N01 X4B 454 A 1 HETATM 2 N N02 X4B . . . D 3 37.267 81.704 -47.914 1 23.82 ? N02 X4B 454 A 1 HETATM 3 N N03 X4B . . . D 3 35.392 83.172 -43.761 1 29.89 ? N03 X4B 454 A 1 HETATM 4 N N04 X4B . . . D 3 42.393 79.959 -46.932 1 27.13 ? N04 X4B 454 A 1 HETATM 5 C C05 X4B . . . D 3 40.791 80.804 -48.429 1 24.22 ? C05 X4B 454 A 1 HETATM 6 C C06 X4B . . . D 3 39.464 81.267 -48.712 1 22.64 ? C06 X4B 454 A 1 HETATM 7 C C07 X4B . . . D 3 38.482 81.289 -47.667 1 24.36 ? C07 X4B 454 A 1 HETATM 8 C C08 X4B . . . D 3 38.865 80.854 -46.351 1 25.24 ? C08 X4B 454 A 1 HETATM 9 C C09 X4B . . . D 3 40.186 80.403 -46.072 1 26.19 ? C09 X4B 454 A 1 HETATM 10 C C10 X4B . . . D 3 41.175 80.366 -47.125 1 25.96 ? C10 X4B 454 A 1 HETATM 11 C C11 X4B . . . D 3 39.171 81.685 -49.988 1 21.85 ? C11 X4B 454 A 1 HETATM 12 C C12 X4B . . . D 3 36.091 81.37 -47.061 1 26.25 ? C12 X4B 454 A 1 HETATM 13 C C13 X4B . . . D 3 35.829 82.481 -46.071 1 28.19 ? C13 X4B 454 A 1 HETATM 14 C C14 X4B . . . D 3 35.635 82.198 -44.704 1 30.26 ? C14 X4B 454 A 1 HETATM 15 C C15 X4B . . . D 3 35.338 84.483 -44.185 1 29.59 ? C15 X4B 454 A 1 HETATM 16 C C16 X4B . . . D 3 35.521 84.866 -45.525 1 28.94 ? C16 X4B 454 A 1 HETATM 17 C C17 X4B . . . D 3 35.77 83.842 -46.476 1 28.31 ? C17 X4B 454 A 1 HETATM 18 O O18 X4B . . . D 3 38.325 82.547 -50.191 1 19.8 ? O18 X4B 454 A 1 HETATM 19 O O19 X4B . . . D 3 43.365 80.393 -47.697 1 27.6 ? O19 X4B 454 A 1 HETATM 20 O O20 X4B . . . D 3 42.694 79.086 -46 1 29.24 ? O20 X4B 454 A 1 HETATM 21 CL CL21 X4B . . . D 3 40.546 79.923 -44.461 1 28.56 ? CL21 X4B 454 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #