data_3QX9 # _model_server_result.job_id E6wVHkbxkDrl33i1awy6SQ _model_server_result.datetime_utc '2024-11-21 22:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3QX9 # _exptl.entry_id 3QX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 87.14 _cell.angle_beta 73.56 _cell.angle_gamma 84.56 _cell.entry_id 3QX9 _cell.length_a 40.494 _cell.length_b 46.508 _cell.length_c 65.817 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3QX9 _atom_sites.fract_transf_matrix[1][1] 0.024695 _atom_sites.fract_transf_matrix[1][2] -0.002352 _atom_sites.fract_transf_matrix[1][3] -0.007232 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021599 _atom_sites.fract_transf_matrix[2][3] -0.000522 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATP A 1 1 1 ATP ATP . E 2 ATP B 1 1 1 ATP ATP . F 2 ATP C 1 1 1 ATP ATP . G 3 HOH A 1 2 2 HOH HOH . G 3 HOH A 2 3 3 HOH HOH . G 3 HOH A 3 4 4 HOH HOH . G 3 HOH A 4 5 5 HOH HOH . G 3 HOH A 5 6 6 HOH HOH . G 3 HOH A 6 8 8 HOH HOH . G 3 HOH A 7 9 9 HOH HOH . G 3 HOH A 8 11 11 HOH HOH . G 3 HOH A 9 13 13 HOH HOH . G 3 HOH A 10 14 14 HOH HOH . G 3 HOH A 11 17 17 HOH HOH . G 3 HOH A 12 18 18 HOH HOH . G 3 HOH A 13 21 21 HOH HOH . G 3 HOH A 14 23 23 HOH HOH . G 3 HOH A 15 24 24 HOH HOH . G 3 HOH A 16 27 27 HOH HOH . G 3 HOH A 17 28 28 HOH HOH . G 3 HOH A 18 30 30 HOH HOH . G 3 HOH A 19 33 33 HOH HOH . G 3 HOH A 20 35 35 HOH HOH . G 3 HOH A 21 36 36 HOH HOH . G 3 HOH A 22 38 38 HOH HOH . G 3 HOH A 23 41 41 HOH HOH . G 3 HOH A 24 42 42 HOH HOH . G 3 HOH A 25 45 45 HOH HOH . G 3 HOH A 26 46 46 HOH HOH . G 3 HOH A 27 48 48 HOH HOH . G 3 HOH A 28 49 49 HOH HOH . G 3 HOH A 29 51 51 HOH HOH . G 3 HOH A 30 52 52 HOH HOH . G 3 HOH A 31 53 53 HOH HOH . G 3 HOH A 32 57 57 HOH HOH . G 3 HOH A 33 62 62 HOH HOH . G 3 HOH A 34 65 65 HOH HOH . G 3 HOH A 35 71 71 HOH HOH . G 3 HOH A 36 72 72 HOH HOH . G 3 HOH A 37 75 75 HOH HOH . G 3 HOH A 38 80 80 HOH HOH . G 3 HOH A 39 83 83 HOH HOH . G 3 HOH A 40 84 84 HOH HOH . G 3 HOH A 41 86 86 HOH HOH . G 3 HOH A 42 88 88 HOH HOH . G 3 HOH A 43 93 93 HOH HOH . G 3 HOH A 44 94 94 HOH HOH . G 3 HOH A 45 96 96 HOH HOH . G 3 HOH A 46 97 97 HOH HOH . G 3 HOH A 47 103 103 HOH HOH . G 3 HOH A 48 104 104 HOH HOH . G 3 HOH A 49 106 106 HOH HOH . G 3 HOH A 50 107 107 HOH HOH . G 3 HOH A 51 110 110 HOH HOH . G 3 HOH A 52 115 115 HOH HOH . G 3 HOH A 53 117 117 HOH HOH . G 3 HOH A 54 118 118 HOH HOH . G 3 HOH A 55 119 119 HOH HOH . G 3 HOH A 56 124 124 HOH HOH . G 3 HOH A 57 125 125 HOH HOH . G 3 HOH A 58 129 129 HOH HOH . G 3 HOH A 59 136 136 HOH HOH . G 3 HOH A 60 138 138 HOH HOH . G 3 HOH A 61 140 140 HOH HOH . G 3 HOH A 62 141 141 HOH HOH . G 3 HOH A 63 143 143 HOH HOH . G 3 HOH A 64 144 144 HOH HOH . G 3 HOH A 65 145 145 HOH HOH . G 3 HOH A 66 147 147 HOH HOH . G 3 HOH A 67 148 148 HOH HOH . G 3 HOH A 68 149 149 HOH HOH . G 3 HOH A 69 151 151 HOH HOH . G 3 HOH A 70 155 155 HOH HOH . G 3 HOH A 71 158 158 HOH HOH . G 3 HOH A 72 159 159 HOH HOH . G 3 HOH A 73 162 162 HOH HOH . G 3 HOH A 74 163 163 HOH HOH . G 3 HOH A 75 164 164 HOH HOH . G 3 HOH A 76 165 165 HOH HOH . G 3 HOH A 77 166 166 HOH HOH . G 3 HOH A 78 167 167 HOH HOH . G 3 HOH A 79 168 168 HOH HOH . G 3 HOH A 80 170 170 HOH HOH . G 3 HOH A 81 171 171 HOH HOH . G 3 HOH A 82 176 176 HOH HOH . G 3 HOH A 83 178 178 HOH HOH . G 3 HOH A 84 179 179 HOH HOH . G 3 HOH A 85 181 181 HOH HOH . G 3 HOH A 86 185 185 HOH HOH . G 3 HOH A 87 186 186 HOH HOH . G 3 HOH A 88 189 189 HOH HOH . G 3 HOH A 89 190 190 HOH HOH . G 3 HOH A 90 191 191 HOH HOH . G 3 HOH A 91 192 192 HOH HOH . G 3 HOH A 92 193 193 HOH HOH . G 3 HOH A 93 195 195 HOH HOH . G 3 HOH A 94 206 206 HOH HOH . G 3 HOH A 95 207 207 HOH HOH . G 3 HOH A 96 210 210 HOH HOH . G 3 HOH A 97 211 211 HOH HOH . G 3 HOH A 98 213 213 HOH HOH . G 3 HOH A 99 214 214 HOH HOH . G 3 HOH A 100 216 216 HOH HOH . G 3 HOH A 101 217 217 HOH HOH . G 3 HOH A 102 576 1 HOH HOH . H 3 HOH B 1 7 7 HOH HOH . H 3 HOH B 2 10 10 HOH HOH . H 3 HOH B 3 12 12 HOH HOH . H 3 HOH B 4 22 22 HOH HOH . H 3 HOH B 5 26 26 HOH HOH . H 3 HOH B 6 32 32 HOH HOH . H 3 HOH B 7 39 39 HOH HOH . H 3 HOH B 8 44 44 HOH HOH . H 3 HOH B 9 55 55 HOH HOH . H 3 HOH B 10 61 61 HOH HOH . H 3 HOH B 11 63 63 HOH HOH . H 3 HOH B 12 64 64 HOH HOH . H 3 HOH B 13 67 67 HOH HOH . H 3 HOH B 14 68 68 HOH HOH . H 3 HOH B 15 70 70 HOH HOH . H 3 HOH B 16 73 73 HOH HOH . H 3 HOH B 17 74 74 HOH HOH . H 3 HOH B 18 76 76 HOH HOH . H 3 HOH B 19 77 77 HOH HOH . H 3 HOH B 20 81 81 HOH HOH . H 3 HOH B 21 87 87 HOH HOH . H 3 HOH B 22 91 91 HOH HOH . H 3 HOH B 23 92 92 HOH HOH . H 3 HOH B 24 95 95 HOH HOH . H 3 HOH B 25 100 100 HOH HOH . H 3 HOH B 26 101 101 HOH HOH . H 3 HOH B 27 108 108 HOH HOH . H 3 HOH B 28 109 109 HOH HOH . H 3 HOH B 29 111 111 HOH HOH . H 3 HOH B 30 112 112 HOH HOH . H 3 HOH B 31 113 113 HOH HOH . H 3 HOH B 32 114 114 HOH HOH . H 3 HOH B 33 123 123 HOH HOH . H 3 HOH B 34 127 127 HOH HOH . H 3 HOH B 35 130 130 HOH HOH . H 3 HOH B 36 132 132 HOH HOH . H 3 HOH B 37 133 133 HOH HOH . H 3 HOH B 38 135 135 HOH HOH . H 3 HOH B 39 139 139 HOH HOH . H 3 HOH B 40 146 146 HOH HOH . H 3 HOH B 41 150 150 HOH HOH . H 3 HOH B 42 156 156 HOH HOH . H 3 HOH B 43 161 161 HOH HOH . H 3 HOH B 44 172 172 HOH HOH . H 3 HOH B 45 184 184 HOH HOH . H 3 HOH B 46 194 194 HOH HOH . H 3 HOH B 47 196 196 HOH HOH . H 3 HOH B 48 197 197 HOH HOH . H 3 HOH B 49 198 198 HOH HOH . H 3 HOH B 50 204 204 HOH HOH . H 3 HOH B 51 215 215 HOH HOH . H 3 HOH B 52 218 218 HOH HOH . H 3 HOH B 53 219 219 HOH HOH . H 3 HOH B 54 227 227 HOH HOH . I 3 HOH C 1 15 15 HOH HOH . I 3 HOH C 2 16 16 HOH HOH . I 3 HOH C 3 19 19 HOH HOH . I 3 HOH C 4 20 20 HOH HOH . I 3 HOH C 5 25 25 HOH HOH . I 3 HOH C 6 29 29 HOH HOH . I 3 HOH C 7 31 31 HOH HOH . I 3 HOH C 8 34 34 HOH HOH . I 3 HOH C 9 37 37 HOH HOH . I 3 HOH C 10 40 40 HOH HOH . I 3 HOH C 11 43 43 HOH HOH . I 3 HOH C 12 47 47 HOH HOH . I 3 HOH C 13 50 50 HOH HOH . I 3 HOH C 14 54 54 HOH HOH . I 3 HOH C 15 56 56 HOH HOH . I 3 HOH C 16 58 58 HOH HOH . I 3 HOH C 17 59 59 HOH HOH . I 3 HOH C 18 60 60 HOH HOH . I 3 HOH C 19 66 66 HOH HOH . I 3 HOH C 20 69 69 HOH HOH . I 3 HOH C 21 78 78 HOH HOH . I 3 HOH C 22 79 79 HOH HOH . I 3 HOH C 23 82 82 HOH HOH . I 3 HOH C 24 85 85 HOH HOH . I 3 HOH C 25 89 89 HOH HOH . I 3 HOH C 26 90 90 HOH HOH . I 3 HOH C 27 98 98 HOH HOH . I 3 HOH C 28 99 99 HOH HOH . I 3 HOH C 29 102 102 HOH HOH . I 3 HOH C 30 105 105 HOH HOH . I 3 HOH C 31 116 116 HOH HOH . I 3 HOH C 32 120 120 HOH HOH . I 3 HOH C 33 121 121 HOH HOH . I 3 HOH C 34 122 122 HOH HOH . I 3 HOH C 35 126 126 HOH HOH . I 3 HOH C 36 128 128 HOH HOH . I 3 HOH C 37 131 131 HOH HOH . I 3 HOH C 38 134 134 HOH HOH . I 3 HOH C 39 137 137 HOH HOH . I 3 HOH C 40 142 142 HOH HOH . I 3 HOH C 41 152 152 HOH HOH . I 3 HOH C 42 153 153 HOH HOH . I 3 HOH C 43 154 154 HOH HOH . I 3 HOH C 44 157 157 HOH HOH . I 3 HOH C 45 160 160 HOH HOH . I 3 HOH C 46 169 169 HOH HOH . I 3 HOH C 47 173 173 HOH HOH . I 3 HOH C 48 174 174 HOH HOH . I 3 HOH C 49 175 175 HOH HOH . I 3 HOH C 50 177 177 HOH HOH . I 3 HOH C 51 180 180 HOH HOH . I 3 HOH C 52 182 182 HOH HOH . I 3 HOH C 53 183 183 HOH HOH . I 3 HOH C 54 187 187 HOH HOH . I 3 HOH C 55 188 188 HOH HOH . I 3 HOH C 56 199 199 HOH HOH . I 3 HOH C 57 200 200 HOH HOH . I 3 HOH C 58 201 201 HOH HOH . I 3 HOH C 59 202 202 HOH HOH . I 3 HOH C 60 203 203 HOH HOH . I 3 HOH C 61 208 208 HOH HOH . I 3 HOH C 62 209 209 HOH HOH . I 3 HOH C 63 212 212 HOH HOH . I 3 HOH C 64 220 220 HOH HOH . I 3 HOH C 65 221 221 HOH HOH . I 3 HOH C 66 222 222 HOH HOH . I 3 HOH C 67 223 223 HOH HOH . I 3 HOH C 68 224 224 HOH HOH . I 3 HOH C 69 225 225 HOH HOH . I 3 HOH C 70 226 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 20.712 10.342 -24.254 0.28 64.58 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . D 2 19.299 10.16 -24.753 0.85 53.89 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . D 2 21.125 11.782 -24.072 0.86 61.54 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . D 2 21.735 9.475 -24.949 0.89 55.11 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . D 2 20.704 8.188 -22.432 0.45 49.44 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . D 2 19.455 7.556 -22.993 0.65 53.19 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . D 2 22.053 7.638 -22.823 0.99 50.29 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . D 2 20.685 9.771 -22.749 0.98 52.97 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . D 2 19.374 7.525 -20.049 0.9 44.99 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . D 2 19.584 6.043 -19.867 1 40.71 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . D 2 18.115 8.04 -20.707 0.98 45.12 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . D 2 20.627 8.174 -20.827 1 46.39 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . D 2 19.515 8.247 -18.617 1 45.56 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . D 2 18.55 9.209 -18.193 1 46.2 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . D 2 18.742 9.529 -16.715 0.86 45.85 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . D 2 20.115 9.428 -16.334 1 45.04 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . D 2 18.289 10.944 -16.378 0.37 46.23 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . D 2 17.109 10.894 -15.567 0.76 48.77 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . D 2 19.457 11.575 -15.633 0.71 46.18 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . D 2 19.054 12.202 -14.412 0.35 47.68 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . D 2 20.415 10.421 -15.355 0.67 45.93 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . D 2 21.829 10.853 -15.443 0.71 44.65 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . D 2 22.427 11.397 -16.521 0.99 44.51 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . D 2 23.73 11.681 -16.268 0.81 43.65 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . D 2 23.988 11.318 -14.997 1 42.73 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . D 2 25.163 11.343 -14.094 1 41.13 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . D 2 26.362 11.829 -14.505 1 42.91 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . D 2 25.003 10.865 -12.845 1 39.74 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . D 2 23.82 10.382 -12.42 0.72 42.31 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . D 2 22.713 10.331 -13.18 1 42.61 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . D 2 22.732 10.777 -14.458 0.76 43.61 ? C4 ATP 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #