data_3QXV
#
_model_server_result.job_id            isJR8dg1OFkqJwZhoji43g 
_model_server_result.datetime_utc      '2024-10-20 00:36:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qxv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2000}' 
#
_entry.id    3QXV 
#
_exptl.entry_id    3QXV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.27 
_cell.angle_gamma         90 
_cell.entry_id            3QXV 
_cell.length_a            43.669 
_cell.length_b            57.605 
_cell.length_c            131.136 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QXV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,O 1 1 
B,H,I,J,P 2 1 
C,K,L,Q 3 1 
D,M,R 4 1 
E,N,S 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 24 C CYS 24 1_555 C SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf4 D SG CYS 24 D CYS 24 1_555 D SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 E SG CYS 24 E CYS 24 1_555 E SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3QXV 
_atom_sites.fract_transf_matrix[1][1]    0.0229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000108 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007626 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 MTX A 1 2000 2000 MTX MTX . 
G 3 SO4 A 1 3000 3000 SO4 SO4 . 
H 3 SO4 B 1 3000 3000 SO4 SO4 . 
I 3 SO4 B 1 3001 3001 SO4 SO4 . 
J 2 MTX B 1 2000 2000 MTX MTX . 
K 2 MTX C 1 2000 2000 MTX MTX . 
L 3 SO4 C 1 3000 3000 SO4 SO4 . 
M 2 MTX D 1 2000 2000 MTX MTX . 
N 2 MTX E 1 2000 2000 MTX MTX . 
O 4 HOH A 1 1000 1000 HOH HOH . 
O 4 HOH A 2 1001 1001 HOH HOH . 
O 4 HOH A 3 1002 1002 HOH HOH . 
O 4 HOH A 4 1003 1003 HOH HOH . 
O 4 HOH A 5 1004 1004 HOH HOH . 
O 4 HOH A 6 1005 1005 HOH HOH . 
O 4 HOH A 7 1006 1006 HOH HOH . 
O 4 HOH A 8 1007 1007 HOH HOH . 
O 4 HOH A 9 1008 1008 HOH HOH . 
O 4 HOH A 10 1009 1009 HOH HOH . 
O 4 HOH A 11 1010 1010 HOH HOH . 
O 4 HOH A 12 1011 1011 HOH HOH . 
O 4 HOH A 13 1012 1012 HOH HOH . 
O 4 HOH A 14 1013 1013 HOH HOH . 
O 4 HOH A 15 1014 1003 HOH HOH . 
P 4 HOH B 1 1000 1000 HOH HOH . 
P 4 HOH B 2 1001 1001 HOH HOH . 
P 4 HOH B 3 1002 1002 HOH HOH . 
P 4 HOH B 4 1003 1010 HOH HOH . 
P 4 HOH B 5 1004 1004 HOH HOH . 
P 4 HOH B 6 1005 1005 HOH HOH . 
P 4 HOH B 7 1006 1006 HOH HOH . 
P 4 HOH B 8 1007 1007 HOH HOH . 
P 4 HOH B 9 1008 1008 HOH HOH . 
P 4 HOH B 10 1009 1009 HOH HOH . 
P 4 HOH B 11 1010 1010 HOH HOH . 
P 4 HOH B 12 1011 1011 HOH HOH . 
P 4 HOH B 13 1012 1012 HOH HOH . 
P 4 HOH B 14 1013 1013 HOH HOH . 
P 4 HOH B 15 1014 1014 HOH HOH . 
P 4 HOH B 16 1015 1015 HOH HOH . 
P 4 HOH B 17 1016 1012 HOH HOH . 
Q 4 HOH C 1 1000 1000 HOH HOH . 
Q 4 HOH C 2 1001 1001 HOH HOH . 
Q 4 HOH C 3 1002 1002 HOH HOH . 
Q 4 HOH C 4 1003 1003 HOH HOH . 
Q 4 HOH C 5 1004 1004 HOH HOH . 
Q 4 HOH C 6 1005 1005 HOH HOH . 
Q 4 HOH C 7 1006 1006 HOH HOH . 
Q 4 HOH C 8 1007 1007 HOH HOH . 
Q 4 HOH C 9 1008 1008 HOH HOH . 
Q 4 HOH C 10 1009 1009 HOH HOH . 
Q 4 HOH C 11 1011 1011 HOH HOH . 
Q 4 HOH C 12 1013 1013 HOH HOH . 
Q 4 HOH C 13 1014 1014 HOH HOH . 
R 4 HOH D 1 1000 1000 HOH HOH . 
R 4 HOH D 2 1001 1001 HOH HOH . 
R 4 HOH D 3 1002 1002 HOH HOH . 
R 4 HOH D 4 1003 1003 HOH HOH . 
R 4 HOH D 5 1004 1004 HOH HOH . 
S 4 HOH E 1 1000 1000 HOH HOH . 
S 4 HOH E 2 1001 1001 HOH HOH . 
S 4 HOH E 3 1002 1002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . J 2 -4.35 22.655 -53.229 1 8.25 ? N1 MTX 2000 B 1 
HETATM 2 C C2 MTX . . . J 2 -5.167 21.699 -52.667 1 7.59 ? C2 MTX 2000 B 1 
HETATM 3 N NA2 MTX . . . J 2 -6.315 22.066 -52.122 1 10.86 ? NA2 MTX 2000 B 1 
HETATM 4 N N3 MTX . . . J 2 -4.808 20.366 -52.712 1 9.26 ? N3 MTX 2000 B 1 
HETATM 5 C C4 MTX . . . J 2 -3.591 20.013 -53.275 1 7.37 ? C4 MTX 2000 B 1 
HETATM 6 N NA4 MTX . . . J 2 -3.309 18.741 -53.492 1 13.12 ? NA4 MTX 2000 B 1 
HETATM 7 C C4A MTX . . . J 2 -2.762 20.983 -53.822 1 10.7 ? C4A MTX 2000 B 1 
HETATM 8 N N5 MTX . . . J 2 -1.535 20.641 -54.365 1 9.86 ? N5 MTX 2000 B 1 
HETATM 9 C C6 MTX . . . J 2 -0.738 21.605 -54.931 1 10.22 ? C6 MTX 2000 B 1 
HETATM 10 C C7 MTX . . . J 2 -1.174 22.93 -54.924 1 10.29 ? C7 MTX 2000 B 1 
HETATM 11 N N8 MTX . . . J 2 -2.389 23.275 -54.385 1 9.43 ? N8 MTX 2000 B 1 
HETATM 12 C C8A MTX . . . J 2 -3.169 22.313 -53.812 1 7.49 ? C8A MTX 2000 B 1 
HETATM 13 C C9 MTX . . . J 2 0.621 21.233 -55.499 1 9.2 ? C9 MTX 2000 B 1 
HETATM 14 N N10 MTX . . . J 2 1.25 22.358 -56.17 1 11.31 ? N10 MTX 2000 B 1 
HETATM 15 C CM MTX . . . J 2 0.697 22.653 -57.493 1 11.43 ? CM MTX 2000 B 1 
HETATM 16 C C11 MTX . . . J 2 5.203 23.734 -55.327 1 14.94 ? C11 MTX 2000 B 1 
HETATM 17 C C12 MTX . . . J 2 4.681 23.852 -56.611 1 13.92 ? C12 MTX 2000 B 1 
HETATM 18 C C13 MTX . . . J 2 3.383 23.404 -56.873 1 13.49 ? C13 MTX 2000 B 1 
HETATM 19 C C14 MTX . . . J 2 2.589 22.817 -55.871 1 12.4 ? C14 MTX 2000 B 1 
HETATM 20 C C15 MTX . . . J 2 3.135 22.719 -54.592 1 11.17 ? C15 MTX 2000 B 1 
HETATM 21 C C16 MTX . . . J 2 4.487 23.006 -54.382 1 13.66 ? C16 MTX 2000 B 1 
HETATM 22 C C MTX . . . J 2 6.596 24.205 -55.031 1 15.31 ? C MTX 2000 B 1 
HETATM 23 O O MTX . . . J 2 7.101 24.152 -53.714 1 15.34 ? O MTX 2000 B 1 
HETATM 24 N N MTX . . . J 2 7.313 24.606 -56.073 1 16.27 ? N MTX 2000 B 1 
HETATM 25 C CA MTX . . . J 2 8.313 25.656 -56.124 1 17.17 ? CA MTX 2000 B 1 
HETATM 26 C CT MTX . . . J 2 9.421 25.18 -57.022 1 18.1 ? CT MTX 2000 B 1 
HETATM 27 O O1 MTX . . . J 2 10.631 25.484 -56.855 1 18.01 ? O1 MTX 2000 B 1 
HETATM 28 O O2 MTX . . . J 2 9.098 24.415 -57.963 1 18.43 ? O2 MTX 2000 B 1 
HETATM 29 C CB MTX . . . J 2 8.78 26.122 -54.743 1 16.75 ? CB MTX 2000 B 1 
HETATM 30 C CG MTX . . . J 2 8.285 27.536 -54.471 1 15.64 ? CG MTX 2000 B 1 
HETATM 31 C CD MTX . . . J 2 6.772 27.655 -54.331 1 16.7 ? CD MTX 2000 B 1 
HETATM 32 O OE1 MTX . . . J 2 6.303 28.172 -53.29 1 16.64 ? OE1 MTX 2000 B 1 
HETATM 33 O OE2 MTX . . . J 2 5.968 27.322 -55.252 1 15.37 ? OE2 MTX 2000 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           438 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#