data_3QXV # _model_server_result.job_id '_swSHXKMBgN2izdiskLLeA' _model_server_result.datetime_utc '2024-10-20 00:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2000}' # _entry.id 3QXV # _exptl.entry_id 3QXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.27 _cell.angle_gamma 90 _cell.entry_id 3QXV _cell.length_a 43.669 _cell.length_b 57.605 _cell.length_c 131.136 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,O 1 1 B,H,I,J,P 2 1 C,K,L,Q 3 1 D,M,R 4 1 E,N,S 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 24 C CYS 24 1_555 C SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 D SG CYS 24 D CYS 24 1_555 D SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 E SG CYS 24 E CYS 24 1_555 E SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QXV _atom_sites.fract_transf_matrix[1][1] 0.0229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 MTX A 1 2000 2000 MTX MTX . G 3 SO4 A 1 3000 3000 SO4 SO4 . H 3 SO4 B 1 3000 3000 SO4 SO4 . I 3 SO4 B 1 3001 3001 SO4 SO4 . J 2 MTX B 1 2000 2000 MTX MTX . K 2 MTX C 1 2000 2000 MTX MTX . L 3 SO4 C 1 3000 3000 SO4 SO4 . M 2 MTX D 1 2000 2000 MTX MTX . N 2 MTX E 1 2000 2000 MTX MTX . O 4 HOH A 1 1000 1000 HOH HOH . O 4 HOH A 2 1001 1001 HOH HOH . O 4 HOH A 3 1002 1002 HOH HOH . O 4 HOH A 4 1003 1003 HOH HOH . O 4 HOH A 5 1004 1004 HOH HOH . O 4 HOH A 6 1005 1005 HOH HOH . O 4 HOH A 7 1006 1006 HOH HOH . O 4 HOH A 8 1007 1007 HOH HOH . O 4 HOH A 9 1008 1008 HOH HOH . O 4 HOH A 10 1009 1009 HOH HOH . O 4 HOH A 11 1010 1010 HOH HOH . O 4 HOH A 12 1011 1011 HOH HOH . O 4 HOH A 13 1012 1012 HOH HOH . O 4 HOH A 14 1013 1013 HOH HOH . O 4 HOH A 15 1014 1003 HOH HOH . P 4 HOH B 1 1000 1000 HOH HOH . P 4 HOH B 2 1001 1001 HOH HOH . P 4 HOH B 3 1002 1002 HOH HOH . P 4 HOH B 4 1003 1010 HOH HOH . P 4 HOH B 5 1004 1004 HOH HOH . P 4 HOH B 6 1005 1005 HOH HOH . P 4 HOH B 7 1006 1006 HOH HOH . P 4 HOH B 8 1007 1007 HOH HOH . P 4 HOH B 9 1008 1008 HOH HOH . P 4 HOH B 10 1009 1009 HOH HOH . P 4 HOH B 11 1010 1010 HOH HOH . P 4 HOH B 12 1011 1011 HOH HOH . P 4 HOH B 13 1012 1012 HOH HOH . P 4 HOH B 14 1013 1013 HOH HOH . P 4 HOH B 15 1014 1014 HOH HOH . P 4 HOH B 16 1015 1015 HOH HOH . P 4 HOH B 17 1016 1012 HOH HOH . Q 4 HOH C 1 1000 1000 HOH HOH . Q 4 HOH C 2 1001 1001 HOH HOH . Q 4 HOH C 3 1002 1002 HOH HOH . Q 4 HOH C 4 1003 1003 HOH HOH . Q 4 HOH C 5 1004 1004 HOH HOH . Q 4 HOH C 6 1005 1005 HOH HOH . Q 4 HOH C 7 1006 1006 HOH HOH . Q 4 HOH C 8 1007 1007 HOH HOH . Q 4 HOH C 9 1008 1008 HOH HOH . Q 4 HOH C 10 1009 1009 HOH HOH . Q 4 HOH C 11 1011 1011 HOH HOH . Q 4 HOH C 12 1013 1013 HOH HOH . Q 4 HOH C 13 1014 1014 HOH HOH . R 4 HOH D 1 1000 1000 HOH HOH . R 4 HOH D 2 1001 1001 HOH HOH . R 4 HOH D 3 1002 1002 HOH HOH . R 4 HOH D 4 1003 1003 HOH HOH . R 4 HOH D 5 1004 1004 HOH HOH . S 4 HOH E 1 1000 1000 HOH HOH . S 4 HOH E 2 1001 1001 HOH HOH . S 4 HOH E 3 1002 1002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . K 2 15.319 -5.932 -50.842 1 58.83 ? N1 MTX 2000 C 1 HETATM 2 C C2 MTX . . . K 2 14.058 -5.626 -51.365 1 56.73 ? C2 MTX 2000 C 1 HETATM 3 N NA2 MTX . . . K 2 13.281 -6.517 -52.004 1 53.98 ? NA2 MTX 2000 C 1 HETATM 4 N N3 MTX . . . K 2 13.573 -4.346 -51.228 1 57.03 ? N3 MTX 2000 C 1 HETATM 5 C C4 MTX . . . K 2 14.273 -3.354 -50.58 1 58.06 ? C4 MTX 2000 C 1 HETATM 6 N NA4 MTX . . . K 2 13.636 -2.217 -50.287 1 58.41 ? NA4 MTX 2000 C 1 HETATM 7 C C4A MTX . . . K 2 15.533 -3.649 -50.054 1 60.32 ? C4A MTX 2000 C 1 HETATM 8 N N5 MTX . . . K 2 16.252 -2.666 -49.392 1 62.38 ? N5 MTX 2000 C 1 HETATM 9 C C6 MTX . . . K 2 17.505 -2.94 -48.85 1 65.5 ? C6 MTX 2000 C 1 HETATM 10 C C7 MTX . . . K 2 18.027 -4.242 -48.979 1 65.7 ? C7 MTX 2000 C 1 HETATM 11 N N8 MTX . . . K 2 17.298 -5.232 -49.633 1 64.32 ? N8 MTX 2000 C 1 HETATM 12 C C8A MTX . . . K 2 16.053 -4.947 -50.181 1 60.12 ? C8A MTX 2000 C 1 HETATM 13 C C9 MTX . . . K 2 18.279 -1.799 -48.179 1 65.97 ? C9 MTX 2000 C 1 HETATM 14 N N10 MTX . . . K 2 19.265 -2.171 -47.172 1 65.06 ? N10 MTX 2000 C 1 HETATM 15 C CM MTX . . . K 2 18.742 -2.542 -45.848 1 62.61 ? CM MTX 2000 C 1 HETATM 16 C C11 MTX . . . K 2 23.404 -1.246 -47.621 1 76.68 ? C11 MTX 2000 C 1 HETATM 17 C C12 MTX . . . K 2 22.937 -1.896 -46.475 1 74.31 ? C12 MTX 2000 C 1 HETATM 18 C C13 MTX . . . K 2 21.574 -2.19 -46.331 1 69.89 ? C13 MTX 2000 C 1 HETATM 19 C C14 MTX . . . K 2 20.653 -1.849 -47.325 1 69.54 ? C14 MTX 2000 C 1 HETATM 20 C C15 MTX . . . K 2 21.129 -1.204 -48.475 1 73.17 ? C15 MTX 2000 C 1 HETATM 21 C C16 MTX . . . K 2 22.49 -0.912 -48.625 1 74.37 ? C16 MTX 2000 C 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #