data_3QXV
#
_model_server_result.job_id            QvwpnsqYxcfMcYSVlopkQg 
_model_server_result.datetime_utc      '2024-10-20 00:37:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qxv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":2000}' 
#
_entry.id    3QXV 
#
_exptl.entry_id    3QXV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.27 
_cell.angle_gamma         90 
_cell.entry_id            3QXV 
_cell.length_a            43.669 
_cell.length_b            57.605 
_cell.length_c            131.136 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QXV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,O 1 1 
B,H,I,J,P 2 1 
C,K,L,Q 3 1 
D,M,R 4 1 
E,N,S 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 24 C CYS 24 1_555 C SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf4 D SG CYS 24 D CYS 24 1_555 D SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 E SG CYS 24 E CYS 24 1_555 E SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3QXV 
_atom_sites.fract_transf_matrix[1][1]    0.0229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000108 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007626 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 MTX A 1 2000 2000 MTX MTX . 
G 3 SO4 A 1 3000 3000 SO4 SO4 . 
H 3 SO4 B 1 3000 3000 SO4 SO4 . 
I 3 SO4 B 1 3001 3001 SO4 SO4 . 
J 2 MTX B 1 2000 2000 MTX MTX . 
K 2 MTX C 1 2000 2000 MTX MTX . 
L 3 SO4 C 1 3000 3000 SO4 SO4 . 
M 2 MTX D 1 2000 2000 MTX MTX . 
N 2 MTX E 1 2000 2000 MTX MTX . 
O 4 HOH A 1 1000 1000 HOH HOH . 
O 4 HOH A 2 1001 1001 HOH HOH . 
O 4 HOH A 3 1002 1002 HOH HOH . 
O 4 HOH A 4 1003 1003 HOH HOH . 
O 4 HOH A 5 1004 1004 HOH HOH . 
O 4 HOH A 6 1005 1005 HOH HOH . 
O 4 HOH A 7 1006 1006 HOH HOH . 
O 4 HOH A 8 1007 1007 HOH HOH . 
O 4 HOH A 9 1008 1008 HOH HOH . 
O 4 HOH A 10 1009 1009 HOH HOH . 
O 4 HOH A 11 1010 1010 HOH HOH . 
O 4 HOH A 12 1011 1011 HOH HOH . 
O 4 HOH A 13 1012 1012 HOH HOH . 
O 4 HOH A 14 1013 1013 HOH HOH . 
O 4 HOH A 15 1014 1003 HOH HOH . 
P 4 HOH B 1 1000 1000 HOH HOH . 
P 4 HOH B 2 1001 1001 HOH HOH . 
P 4 HOH B 3 1002 1002 HOH HOH . 
P 4 HOH B 4 1003 1010 HOH HOH . 
P 4 HOH B 5 1004 1004 HOH HOH . 
P 4 HOH B 6 1005 1005 HOH HOH . 
P 4 HOH B 7 1006 1006 HOH HOH . 
P 4 HOH B 8 1007 1007 HOH HOH . 
P 4 HOH B 9 1008 1008 HOH HOH . 
P 4 HOH B 10 1009 1009 HOH HOH . 
P 4 HOH B 11 1010 1010 HOH HOH . 
P 4 HOH B 12 1011 1011 HOH HOH . 
P 4 HOH B 13 1012 1012 HOH HOH . 
P 4 HOH B 14 1013 1013 HOH HOH . 
P 4 HOH B 15 1014 1014 HOH HOH . 
P 4 HOH B 16 1015 1015 HOH HOH . 
P 4 HOH B 17 1016 1012 HOH HOH . 
Q 4 HOH C 1 1000 1000 HOH HOH . 
Q 4 HOH C 2 1001 1001 HOH HOH . 
Q 4 HOH C 3 1002 1002 HOH HOH . 
Q 4 HOH C 4 1003 1003 HOH HOH . 
Q 4 HOH C 5 1004 1004 HOH HOH . 
Q 4 HOH C 6 1005 1005 HOH HOH . 
Q 4 HOH C 7 1006 1006 HOH HOH . 
Q 4 HOH C 8 1007 1007 HOH HOH . 
Q 4 HOH C 9 1008 1008 HOH HOH . 
Q 4 HOH C 10 1009 1009 HOH HOH . 
Q 4 HOH C 11 1011 1011 HOH HOH . 
Q 4 HOH C 12 1013 1013 HOH HOH . 
Q 4 HOH C 13 1014 1014 HOH HOH . 
R 4 HOH D 1 1000 1000 HOH HOH . 
R 4 HOH D 2 1001 1001 HOH HOH . 
R 4 HOH D 3 1002 1002 HOH HOH . 
R 4 HOH D 4 1003 1003 HOH HOH . 
R 4 HOH D 5 1004 1004 HOH HOH . 
S 4 HOH E 1 1000 1000 HOH HOH . 
S 4 HOH E 2 1001 1001 HOH HOH . 
S 4 HOH E 3 1002 1002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . M 2 6.087 -14.816 -24.757 1 35.43 ? N1 MTX 2000 D 1 
HETATM 2 C C2 MTX . . . M 2 7.229 -14.362 -25.406 1 34.43 ? C2 MTX 2000 D 1 
HETATM 3 N NA2 MTX . . . M 2 7.265 -13.189 -26.048 1 31.12 ? NA2 MTX 2000 D 1 
HETATM 4 N N3 MTX . . . M 2 8.363 -15.146 -25.407 1 34.23 ? N3 MTX 2000 D 1 
HETATM 5 C C4 MTX . . . M 2 8.378 -16.393 -24.819 1 34.55 ? C4 MTX 2000 D 1 
HETATM 6 N NA4 MTX . . . M 2 9.543 -16.923 -24.46 1 36.15 ? NA4 MTX 2000 D 1 
HETATM 7 C C4A MTX . . . M 2 7.241 -16.845 -24.171 1 37.65 ? C4A MTX 2000 D 1 
HETATM 8 N N5 MTX . . . M 2 7.26 -18.085 -23.557 1 35.7 ? N5 MTX 2000 D 1 
HETATM 9 C C6 MTX . . . M 2 6.12 -18.56 -22.953 1 39.56 ? C6 MTX 2000 D 1 
HETATM 10 C C7 MTX . . . M 2 4.961 -17.793 -22.89 1 40.6 ? C7 MTX 2000 D 1 
HETATM 11 N N8 MTX . . . M 2 4.959 -16.544 -23.47 1 38.3 ? N8 MTX 2000 D 1 
HETATM 12 C C8A MTX . . . M 2 6.085 -16.058 -24.128 1 38.23 ? C8A MTX 2000 D 1 
HETATM 13 C C9 MTX . . . M 2 6.198 -19.936 -22.359 1 43.12 ? C9 MTX 2000 D 1 
HETATM 14 N N10 MTX . . . M 2 5.269 -20.121 -21.289 1 48.43 ? N10 MTX 2000 D 1 
HETATM 15 C CM MTX . . . M 2 5.808 -19.804 -19.96 1 43.62 ? CM MTX 2000 D 1 
HETATM 16 C C11 MTX . . . M 2 2.491 -23.206 -21.822 1 65.85 ? C11 MTX 2000 D 1 
HETATM 17 C C12 MTX . . . M 2 2.518 -22.514 -20.615 1 63.27 ? C12 MTX 2000 D 1 
HETATM 18 C C13 MTX . . . M 2 3.437 -21.482 -20.436 1 57.43 ? C13 MTX 2000 D 1 
HETATM 19 C C14 MTX . . . M 2 4.324 -21.161 -21.454 1 52.64 ? C14 MTX 2000 D 1 
HETATM 20 C C15 MTX . . . M 2 4.287 -21.858 -22.66 1 55.93 ? C15 MTX 2000 D 1 
HETATM 21 C C16 MTX . . . M 2 3.253 -22.756 -22.893 1 62.02 ? C16 MTX 2000 D 1 
HETATM 22 C C MTX . . . M 2 1.496 -24.304 -22.042 1 70.36 ? C MTX 2000 D 1 
HETATM 23 O O MTX . . . M 2 1.951 -25.568 -22.479 1 72.12 ? O MTX 2000 D 1 
HETATM 24 N N MTX . . . M 2 0.2 -24.052 -21.845 1 73.74 ? N MTX 2000 D 1 
HETATM 25 C CA MTX . . . M 2 -0.799 -24.338 -22.871 1 76.98 ? CA MTX 2000 D 1 
HETATM 26 C CT MTX . . . M 2 -2.013 -23.461 -22.731 1 78.81 ? CT MTX 2000 D 1 
HETATM 27 O O1 MTX . . . M 2 -2.021 -22.507 -21.918 1 76.99 ? O1 MTX 2000 D 1 
HETATM 28 O O2 MTX . . . M 2 -3.037 -23.681 -23.425 1 82.26 ? O2 MTX 2000 D 1 
HETATM 29 C CB MTX . . . M 2 -1.221 -25.82 -22.888 1 81.67 ? CB MTX 2000 D 1 
HETATM 30 C CG MTX . . . M 2 -1.352 -26.487 -21.513 1 84.08 ? CG MTX 2000 D 1 
HETATM 31 C CD MTX . . . M 2 0.01 -26.768 -20.909 1 82.57 ? CD MTX 2000 D 1 
HETATM 32 O OE1 MTX . . . M 2 0.459 -26.027 -20.008 1 82.14 ? OE1 MTX 2000 D 1 
HETATM 33 O OE2 MTX . . . M 2 0.728 -27.712 -21.306 1 81.36 ? OE2 MTX 2000 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#