data_3QXV # _model_server_result.job_id OlosJR0H1mvDQfudhd3giA _model_server_result.datetime_utc '2024-10-20 00:29:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2000}' # _entry.id 3QXV # _exptl.entry_id 3QXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.27 _cell.angle_gamma 90 _cell.entry_id 3QXV _cell.length_a 43.669 _cell.length_b 57.605 _cell.length_c 131.136 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,O 1 1 B,H,I,J,P 2 1 C,K,L,Q 3 1 D,M,R 4 1 E,N,S 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 24 C CYS 24 1_555 C SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 D SG CYS 24 D CYS 24 1_555 D SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 E SG CYS 24 E CYS 24 1_555 E SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QXV _atom_sites.fract_transf_matrix[1][1] 0.0229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 MTX A 1 2000 2000 MTX MTX . G 3 SO4 A 1 3000 3000 SO4 SO4 . H 3 SO4 B 1 3000 3000 SO4 SO4 . I 3 SO4 B 1 3001 3001 SO4 SO4 . J 2 MTX B 1 2000 2000 MTX MTX . K 2 MTX C 1 2000 2000 MTX MTX . L 3 SO4 C 1 3000 3000 SO4 SO4 . M 2 MTX D 1 2000 2000 MTX MTX . N 2 MTX E 1 2000 2000 MTX MTX . O 4 HOH A 1 1000 1000 HOH HOH . O 4 HOH A 2 1001 1001 HOH HOH . O 4 HOH A 3 1002 1002 HOH HOH . O 4 HOH A 4 1003 1003 HOH HOH . O 4 HOH A 5 1004 1004 HOH HOH . O 4 HOH A 6 1005 1005 HOH HOH . O 4 HOH A 7 1006 1006 HOH HOH . O 4 HOH A 8 1007 1007 HOH HOH . O 4 HOH A 9 1008 1008 HOH HOH . O 4 HOH A 10 1009 1009 HOH HOH . O 4 HOH A 11 1010 1010 HOH HOH . O 4 HOH A 12 1011 1011 HOH HOH . O 4 HOH A 13 1012 1012 HOH HOH . O 4 HOH A 14 1013 1013 HOH HOH . O 4 HOH A 15 1014 1003 HOH HOH . P 4 HOH B 1 1000 1000 HOH HOH . P 4 HOH B 2 1001 1001 HOH HOH . P 4 HOH B 3 1002 1002 HOH HOH . P 4 HOH B 4 1003 1010 HOH HOH . P 4 HOH B 5 1004 1004 HOH HOH . P 4 HOH B 6 1005 1005 HOH HOH . P 4 HOH B 7 1006 1006 HOH HOH . P 4 HOH B 8 1007 1007 HOH HOH . P 4 HOH B 9 1008 1008 HOH HOH . P 4 HOH B 10 1009 1009 HOH HOH . P 4 HOH B 11 1010 1010 HOH HOH . P 4 HOH B 12 1011 1011 HOH HOH . P 4 HOH B 13 1012 1012 HOH HOH . P 4 HOH B 14 1013 1013 HOH HOH . P 4 HOH B 15 1014 1014 HOH HOH . P 4 HOH B 16 1015 1015 HOH HOH . P 4 HOH B 17 1016 1012 HOH HOH . Q 4 HOH C 1 1000 1000 HOH HOH . Q 4 HOH C 2 1001 1001 HOH HOH . Q 4 HOH C 3 1002 1002 HOH HOH . Q 4 HOH C 4 1003 1003 HOH HOH . Q 4 HOH C 5 1004 1004 HOH HOH . Q 4 HOH C 6 1005 1005 HOH HOH . Q 4 HOH C 7 1006 1006 HOH HOH . Q 4 HOH C 8 1007 1007 HOH HOH . Q 4 HOH C 9 1008 1008 HOH HOH . Q 4 HOH C 10 1009 1009 HOH HOH . Q 4 HOH C 11 1011 1011 HOH HOH . Q 4 HOH C 12 1013 1013 HOH HOH . Q 4 HOH C 13 1014 1014 HOH HOH . R 4 HOH D 1 1000 1000 HOH HOH . R 4 HOH D 2 1001 1001 HOH HOH . R 4 HOH D 3 1002 1002 HOH HOH . R 4 HOH D 4 1003 1003 HOH HOH . R 4 HOH D 5 1004 1004 HOH HOH . S 4 HOH E 1 1000 1000 HOH HOH . S 4 HOH E 2 1001 1001 HOH HOH . S 4 HOH E 3 1002 1002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . N 2 -10.566 25.884 -1.249 1 63.36 ? N1 MTX 2000 E 1 HETATM 2 C C2 MTX . . . N 2 -9.714 24.912 -0.744 1 62.54 ? C2 MTX 2000 E 1 HETATM 3 N NA2 MTX . . . N 2 -10.226 23.851 -0.113 1 59.07 ? NA2 MTX 2000 E 1 HETATM 4 N N3 MTX . . . N 2 -8.342 25.039 -0.903 1 61.89 ? N3 MTX 2000 E 1 HETATM 5 C C4 MTX . . . N 2 -7.803 26.128 -1.559 1 63.77 ? C4 MTX 2000 E 1 HETATM 6 N NA4 MTX . . . N 2 -6.636 25.961 -2.173 1 61.77 ? NA4 MTX 2000 E 1 HETATM 7 C C4A MTX . . . N 2 -8.666 27.11 -2.053 1 65.77 ? C4A MTX 2000 E 1 HETATM 8 N N5 MTX . . . N 2 -8.151 28.218 -2.697 1 69.1 ? N5 MTX 2000 E 1 HETATM 9 C C6 MTX . . . N 2 -8.99 29.21 -3.189 1 72.57 ? C6 MTX 2000 E 1 HETATM 10 C C7 MTX . . . N 2 -10.377 29.069 -3.034 1 69.19 ? C7 MTX 2000 E 1 HETATM 11 N N8 MTX . . . N 2 -10.903 27.959 -2.4 1 65.08 ? N8 MTX 2000 E 1 HETATM 12 C C8A MTX . . . N 2 -10.051 26.984 -1.907 1 64.97 ? C8A MTX 2000 E 1 HETATM 13 C C9 MTX . . . N 2 -8.353 30.417 -3.88 1 77.55 ? C9 MTX 2000 E 1 HETATM 14 N N10 MTX . . . N 2 -9.287 31.351 -4.5 1 79.84 ? N10 MTX 2000 E 1 HETATM 15 C CM MTX . . . N 2 -9.677 31.04 -5.881 1 77.73 ? CM MTX 2000 E 1 HETATM 16 C C11 MTX . . . N 2 -9.749 35.392 -3.258 1 98.25 ? C11 MTX 2000 E 1 HETATM 17 C C12 MTX . . . N 2 -10.169 34.977 -4.517 1 94.2 ? C12 MTX 2000 E 1 HETATM 18 C C13 MTX . . . N 2 -10.007 33.649 -4.901 1 87.34 ? C13 MTX 2000 E 1 HETATM 19 C C14 MTX . . . N 2 -9.423 32.709 -4.053 1 85.48 ? C14 MTX 2000 E 1 HETATM 20 C C15 MTX . . . N 2 -9.012 33.128 -2.785 1 90.99 ? C15 MTX 2000 E 1 HETATM 21 C C16 MTX . . . N 2 -9.068 34.485 -2.445 1 96.99 ? C16 MTX 2000 E 1 HETATM 22 C C MTX . . . N 2 -9.937 36.824 -2.836 1 103.68 ? C MTX 2000 E 1 HETATM 23 O O MTX . . . N 2 -8.97 37.422 -1.993 1 108.23 ? O MTX 2000 E 1 HETATM 24 N N MTX . . . N 2 -11.035 37.478 -3.251 1 105.05 ? N MTX 2000 E 1 HETATM 25 C CA MTX . . . N 2 -11.293 38.915 -3.122 1 110.32 ? CA MTX 2000 E 1 HETATM 26 C CT MTX . . . N 2 -10.19 39.751 -3.712 1 113.2 ? CT MTX 2000 E 1 HETATM 27 O O1 MTX . . . N 2 -9.845 40.845 -3.197 1 118.51 ? O1 MTX 2000 E 1 HETATM 28 O O2 MTX . . . N 2 -9.609 39.348 -4.745 1 111.08 ? O2 MTX 2000 E 1 HETATM 29 C CB MTX . . . N 2 -11.646 39.381 -1.697 1 114.34 ? CB MTX 2000 E 1 HETATM 30 C CG MTX . . . N 2 -12.205 38.287 -0.781 1 112.8 ? CG MTX 2000 E 1 HETATM 31 C CD MTX . . . N 2 -13.533 37.709 -1.252 1 109.85 ? CD MTX 2000 E 1 HETATM 32 O OE1 MTX . . . N 2 -13.754 37.407 -2.447 1 105.28 ? OE1 MTX 2000 E 1 HETATM 33 O OE2 MTX . . . N 2 -14.447 37.508 -0.427 1 111.65 ? OE2 MTX 2000 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #