data_3QY0 # _model_server_result.job_id WC7V3y48btesFqJe9yXxyg _model_server_result.datetime_utc '2024-11-05 00:41:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":232}' # _entry.id 3QY0 # _exptl.entry_id 3QY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.46 _cell.angle_gamma 90 _cell.entry_id 3QY0 _cell.length_a 81.718 _cell.length_b 37.342 _cell.length_c 69.125 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 13.734016 0 -67.7469 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 36 A THR 14 1_555 E MG MG . A MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 A OD2 ASP 72 A ASP 50 1_555 E MG MG . A MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 A OE2 GLU 138 A GLU 116 1_555 E MG MG . A MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 B O1B GDP . A GDP 221 1_555 D MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 B O3B GDP . A GDP 221 1_555 E MG MG . A MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 C O3 PO4 . A PO4 222 1_555 D MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C O1 PO4 . A PO4 222 1_555 D MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc8 C O1 PO4 . A PO4 222 1_555 E MG MG . A MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 D MG MG . A MG 223 1_555 V O HOH . A HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc10 D MG MG . A MG 223 1_555 V O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 D MG MG . A MG 223 1_555 V O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 D MG MG . A MG 223 1_555 V O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc13 E MG MG . A MG 224 1_555 V O HOH . A HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3QY0 _atom_sites.fract_transf_matrix[1][1] 0.012237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002481 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 221 1 GDP GDP . C 3 PO4 A 1 222 2 PO4 PO4 . D 4 MG A 1 223 3 MG MG . E 4 MG A 1 224 4 MG MG . F 5 EDO A 1 225 1 EDO EDO . G 5 EDO A 1 226 6 EDO EDO . H 5 EDO A 1 227 5 EDO EDO . I 5 EDO A 1 228 1 EDO EDO . J 5 EDO A 1 229 1 EDO EDO . K 5 EDO A 1 230 1 EDO EDO . L 5 EDO A 1 231 2 EDO EDO . M 5 EDO A 1 232 1 EDO EDO . N 5 EDO A 1 233 3 EDO EDO . O 5 EDO A 1 234 7 EDO EDO . P 5 EDO A 1 235 8 EDO EDO . Q 5 EDO A 1 236 4 EDO EDO . R 5 EDO A 1 237 1 EDO EDO . S 5 EDO A 1 238 10 EDO EDO . T 5 EDO A 1 239 12 EDO EDO . U 5 EDO A 1 240 1 EDO EDO . V 6 HOH A 1 241 241 HOH HOH . V 6 HOH A 2 242 1 HOH HOH . V 6 HOH A 3 243 2 HOH HOH . V 6 HOH A 4 244 3 HOH HOH . V 6 HOH A 5 245 245 HOH HOH . V 6 HOH A 6 246 4 HOH HOH . V 6 HOH A 7 247 5 HOH HOH . V 6 HOH A 8 248 248 HOH HOH . V 6 HOH A 9 249 6 HOH HOH . V 6 HOH A 10 250 7 HOH HOH . V 6 HOH A 11 251 9 HOH HOH . V 6 HOH A 12 252 252 HOH HOH . V 6 HOH A 13 253 253 HOH HOH . V 6 HOH A 14 254 254 HOH HOH . V 6 HOH A 15 255 10 HOH HOH . V 6 HOH A 16 256 11 HOH HOH . V 6 HOH A 17 257 12 HOH HOH . V 6 HOH A 18 258 13 HOH HOH . V 6 HOH A 19 259 259 HOH HOH . V 6 HOH A 20 260 260 HOH HOH . V 6 HOH A 21 261 14 HOH HOH . V 6 HOH A 22 262 262 HOH HOH . V 6 HOH A 23 263 15 HOH HOH . V 6 HOH A 24 264 264 HOH HOH . V 6 HOH A 25 265 17 HOH HOH . V 6 HOH A 26 266 19 HOH HOH . V 6 HOH A 27 267 20 HOH HOH . V 6 HOH A 28 268 268 HOH HOH . V 6 HOH A 29 269 269 HOH HOH . V 6 HOH A 30 270 270 HOH HOH . V 6 HOH A 31 271 271 HOH HOH . V 6 HOH A 32 272 272 HOH HOH . V 6 HOH A 33 273 22 HOH HOH . V 6 HOH A 34 274 23 HOH HOH . V 6 HOH A 35 275 24 HOH HOH . V 6 HOH A 36 276 25 HOH HOH . V 6 HOH A 37 277 27 HOH HOH . V 6 HOH A 38 278 28 HOH HOH . V 6 HOH A 39 279 29 HOH HOH . V 6 HOH A 40 280 30 HOH HOH . V 6 HOH A 41 281 32 HOH HOH . V 6 HOH A 42 282 33 HOH HOH . V 6 HOH A 43 283 34 HOH HOH . V 6 HOH A 44 284 36 HOH HOH . V 6 HOH A 45 285 39 HOH HOH . V 6 HOH A 46 286 40 HOH HOH . V 6 HOH A 47 287 41 HOH HOH . V 6 HOH A 48 288 288 HOH HOH . V 6 HOH A 49 289 42 HOH HOH . V 6 HOH A 50 290 43 HOH HOH . V 6 HOH A 51 291 291 HOH HOH . V 6 HOH A 52 292 44 HOH HOH . V 6 HOH A 53 293 45 HOH HOH . V 6 HOH A 54 294 294 HOH HOH . V 6 HOH A 55 295 295 HOH HOH . V 6 HOH A 56 296 47 HOH HOH . V 6 HOH A 57 297 49 HOH HOH . V 6 HOH A 58 298 298 HOH HOH . V 6 HOH A 59 299 50 HOH HOH . V 6 HOH A 60 300 300 HOH HOH . V 6 HOH A 61 301 51 HOH HOH . V 6 HOH A 62 302 53 HOH HOH . V 6 HOH A 63 303 303 HOH HOH . V 6 HOH A 64 304 54 HOH HOH . V 6 HOH A 65 305 56 HOH HOH . V 6 HOH A 66 306 57 HOH HOH . V 6 HOH A 67 307 58 HOH HOH . V 6 HOH A 68 308 59 HOH HOH . V 6 HOH A 69 309 309 HOH HOH . V 6 HOH A 70 310 60 HOH HOH . V 6 HOH A 71 311 61 HOH HOH . V 6 HOH A 72 312 62 HOH HOH . V 6 HOH A 73 313 63 HOH HOH . V 6 HOH A 74 314 65 HOH HOH . V 6 HOH A 75 315 66 HOH HOH . V 6 HOH A 76 316 67 HOH HOH . V 6 HOH A 77 317 68 HOH HOH . V 6 HOH A 78 318 69 HOH HOH . V 6 HOH A 79 319 319 HOH HOH . V 6 HOH A 80 320 71 HOH HOH . V 6 HOH A 81 321 321 HOH HOH . V 6 HOH A 82 322 73 HOH HOH . V 6 HOH A 83 323 323 HOH HOH . V 6 HOH A 84 324 74 HOH HOH . V 6 HOH A 85 325 76 HOH HOH . V 6 HOH A 86 326 326 HOH HOH . V 6 HOH A 87 327 327 HOH HOH . V 6 HOH A 88 328 328 HOH HOH . V 6 HOH A 89 329 329 HOH HOH . V 6 HOH A 90 330 330 HOH HOH . V 6 HOH A 91 331 77 HOH HOH . V 6 HOH A 92 332 78 HOH HOH . V 6 HOH A 93 333 80 HOH HOH . V 6 HOH A 94 334 82 HOH HOH . V 6 HOH A 95 335 84 HOH HOH . V 6 HOH A 96 336 86 HOH HOH . V 6 HOH A 97 337 90 HOH HOH . V 6 HOH A 98 338 91 HOH HOH . V 6 HOH A 99 339 92 HOH HOH . V 6 HOH A 100 340 93 HOH HOH . V 6 HOH A 101 341 96 HOH HOH . V 6 HOH A 102 342 97 HOH HOH . V 6 HOH A 103 343 98 HOH HOH . V 6 HOH A 104 344 99 HOH HOH . V 6 HOH A 105 345 100 HOH HOH . V 6 HOH A 106 346 101 HOH HOH . V 6 HOH A 107 347 102 HOH HOH . V 6 HOH A 108 348 104 HOH HOH . V 6 HOH A 109 349 105 HOH HOH . V 6 HOH A 110 350 106 HOH HOH . V 6 HOH A 111 351 107 HOH HOH . V 6 HOH A 112 352 113 HOH HOH . V 6 HOH A 113 353 114 HOH HOH . V 6 HOH A 114 354 115 HOH HOH . V 6 HOH A 115 355 116 HOH HOH . V 6 HOH A 116 356 118 HOH HOH . V 6 HOH A 117 357 122 HOH HOH . V 6 HOH A 118 358 128 HOH HOH . V 6 HOH A 119 359 129 HOH HOH . V 6 HOH A 120 360 132 HOH HOH . V 6 HOH A 121 361 133 HOH HOH . V 6 HOH A 122 362 134 HOH HOH . V 6 HOH A 123 363 136 HOH HOH . V 6 HOH A 124 364 137 HOH HOH . V 6 HOH A 125 365 139 HOH HOH . V 6 HOH A 126 366 140 HOH HOH . V 6 HOH A 127 367 142 HOH HOH . V 6 HOH A 128 368 144 HOH HOH . V 6 HOH A 129 369 151 HOH HOH . V 6 HOH A 130 370 155 HOH HOH . V 6 HOH A 131 371 157 HOH HOH . V 6 HOH A 132 372 158 HOH HOH . V 6 HOH A 133 373 164 HOH HOH . V 6 HOH A 134 374 165 HOH HOH . V 6 HOH A 135 375 166 HOH HOH . V 6 HOH A 136 376 168 HOH HOH . V 6 HOH A 137 377 176 HOH HOH . V 6 HOH A 138 378 177 HOH HOH . V 6 HOH A 139 379 181 HOH HOH . V 6 HOH A 140 380 189 HOH HOH . V 6 HOH A 141 381 197 HOH HOH . V 6 HOH A 142 382 198 HOH HOH . V 6 HOH A 143 383 203 HOH HOH . V 6 HOH A 144 384 205 HOH HOH . V 6 HOH A 145 385 207 HOH HOH . V 6 HOH A 146 386 209 HOH HOH . V 6 HOH A 147 387 210 HOH HOH . V 6 HOH A 148 388 212 HOH HOH . V 6 HOH A 149 389 219 HOH HOH . V 6 HOH A 150 390 221 HOH HOH . V 6 HOH A 151 391 224 HOH HOH . V 6 HOH A 152 392 225 HOH HOH . V 6 HOH A 153 393 227 HOH HOH . V 6 HOH A 154 394 228 HOH HOH . V 6 HOH A 155 395 229 HOH HOH . V 6 HOH A 156 396 231 HOH HOH . V 6 HOH A 157 397 234 HOH HOH . V 6 HOH A 158 398 235 HOH HOH . V 6 HOH A 159 399 238 HOH HOH . V 6 HOH A 160 400 239 HOH HOH . V 6 HOH A 161 401 240 HOH HOH . V 6 HOH A 162 402 1 HOH HOH . V 6 HOH A 163 403 4 HOH HOH . V 6 HOH A 164 404 5 HOH HOH . V 6 HOH A 165 405 7 HOH HOH . V 6 HOH A 166 406 10 HOH HOH . V 6 HOH A 167 407 13 HOH HOH . V 6 HOH A 168 408 15 HOH HOH . V 6 HOH A 169 409 18 HOH HOH . V 6 HOH A 170 410 21 HOH HOH . V 6 HOH A 171 411 1 HOH HOH . V 6 HOH A 172 412 4 HOH HOH . V 6 HOH A 173 413 7 HOH HOH . V 6 HOH A 174 414 13 HOH HOH . V 6 HOH A 175 415 14 HOH HOH . V 6 HOH A 176 416 18 HOH HOH . V 6 HOH A 177 417 19 HOH HOH . V 6 HOH A 178 418 20 HOH HOH . V 6 HOH A 179 419 21 HOH HOH . V 6 HOH A 180 420 25 HOH HOH . V 6 HOH A 181 421 26 HOH HOH . V 6 HOH A 182 422 27 HOH HOH . V 6 HOH A 183 423 28 HOH HOH . V 6 HOH A 184 424 29 HOH HOH . V 6 HOH A 185 425 37 HOH HOH . V 6 HOH A 186 426 39 HOH HOH . V 6 HOH A 187 427 48 HOH HOH . V 6 HOH A 188 428 3 HOH HOH . V 6 HOH A 189 429 4 HOH HOH . V 6 HOH A 190 430 5 HOH HOH . V 6 HOH A 191 431 6 HOH HOH . V 6 HOH A 192 432 8 HOH HOH . V 6 HOH A 193 433 10 HOH HOH . V 6 HOH A 194 434 12 HOH HOH . V 6 HOH A 195 435 31 HOH HOH . V 6 HOH A 196 436 34 HOH HOH . V 6 HOH A 197 437 36 HOH HOH . V 6 HOH A 198 438 38 HOH HOH . V 6 HOH A 199 439 46 HOH HOH . V 6 HOH A 200 440 1 HOH HOH . V 6 HOH A 201 441 4 HOH HOH . V 6 HOH A 202 442 1 HOH HOH . V 6 HOH A 203 443 2 HOH HOH . V 6 HOH A 204 444 4 HOH HOH . V 6 HOH A 205 445 6 HOH HOH . V 6 HOH A 206 446 7 HOH HOH . V 6 HOH A 207 447 9 HOH HOH . V 6 HOH A 208 448 10 HOH HOH . V 6 HOH A 209 449 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 5 4.849 -22.726 -28.867 1 32.07 ? C1 EDO 232 A 1 HETATM 2 O O1 EDO . . . M 5 4.464 -22.425 -27.572 1 33.33 ? O1 EDO 232 A 1 HETATM 3 C C2 EDO . . . M 5 4.462 -21.561 -29.75 1 28.93 ? C2 EDO 232 A 1 HETATM 4 O O2 EDO . . . M 5 5.475 -20.637 -30.002 1 30.23 ? O2 EDO 232 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #