data_3QYL # _model_server_result.job_id LcVah6L4Cnmix5pMj8WBdQ _model_server_result.datetime_utc '2025-06-21 00:22:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":160}' # _entry.id 3QYL # _exptl.entry_id 3QYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.234 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7S)-7-methyl-5,6,7,8-tetrahydroquinazoline-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QYL _cell.length_a 33.865 _cell.length_b 44.82 _cell.length_c 97.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 116 A ASP 116 1_555 D CA CA . A CA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc2 G O HOH . A HOH 168 1_555 D CA CA . A CA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc3 D CA CA . A CA 213 1_555 G O HOH . A HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C9 H14 N4' _chem_comp.formula_weight 178.234 _chem_comp.id 7ME _chem_comp.mon_nstd_flag . _chem_comp.name (7S)-7-methyl-5,6,7,8-tetrahydroquinazoline-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 7ME doub 1 n y N1 C8A 7ME sing 2 n y C2 N3 7ME sing 3 n y C2 NA2 7ME sing 4 n n N3 C4 7ME doub 5 n y C4 C4A 7ME sing 6 n y C4 NA4 7ME sing 7 n n C5 C6 7ME sing 8 n n C5 C4A 7ME sing 9 n n C6 C7 7ME sing 10 n n C7 C8 7ME sing 11 n n C7 C13 7ME sing 12 n n C8 C8A 7ME sing 13 n n C4A C8A 7ME doub 14 n y C5 H5 7ME sing 15 n n C5 H5A 7ME sing 16 n n C6 H6 7ME sing 17 n n C6 H6A 7ME sing 18 n n C7 H7 7ME sing 19 n n C8 H8 7ME sing 20 n n C8 H8A 7ME sing 21 n n C13 H13 7ME sing 22 n n C13 H13A 7ME sing 23 n n C13 H13B 7ME sing 24 n n NA2 HNA2 7ME sing 25 n n NA2 HNAA 7ME sing 26 n n NA4 HNA4 7ME sing 27 n n NA4 HNAB 7ME sing 28 n n # _atom_sites.entry_id 3QYL _atom_sites.fract_transf_matrix[1][1] 0.029529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7ME A 1 160 160 7ME 7ME . C 3 NDP A 1 161 161 NDP NDP . D 4 CA A 1 213 213 CA CA . E 5 CL A 1 227 227 CL CL . F 4 CA A 1 300 300 CA CA . G 6 HOH A 1 162 162 HOH HOH . G 6 HOH A 2 163 163 HOH HOH . G 6 HOH A 3 164 164 HOH HOH . G 6 HOH A 4 165 165 HOH HOH . G 6 HOH A 5 166 166 HOH HOH . G 6 HOH A 6 167 167 HOH HOH . G 6 HOH A 7 168 168 HOH HOH . G 6 HOH A 8 169 169 HOH HOH . G 6 HOH A 9 170 170 HOH HOH . G 6 HOH A 10 171 171 HOH HOH . G 6 HOH A 11 172 172 HOH HOH . G 6 HOH A 12 173 173 HOH HOH . G 6 HOH A 13 174 174 HOH HOH . G 6 HOH A 14 175 175 HOH HOH . G 6 HOH A 15 176 176 HOH HOH . G 6 HOH A 16 177 177 HOH HOH . G 6 HOH A 17 178 178 HOH HOH . G 6 HOH A 18 179 179 HOH HOH . G 6 HOH A 19 180 180 HOH HOH . G 6 HOH A 20 181 181 HOH HOH . G 6 HOH A 21 182 182 HOH HOH . G 6 HOH A 22 183 183 HOH HOH . G 6 HOH A 23 184 184 HOH HOH . G 6 HOH A 24 185 185 HOH HOH . G 6 HOH A 25 186 186 HOH HOH . G 6 HOH A 26 187 187 HOH HOH . G 6 HOH A 27 188 188 HOH HOH . G 6 HOH A 28 189 189 HOH HOH . G 6 HOH A 29 190 190 HOH HOH . G 6 HOH A 30 191 191 HOH HOH . G 6 HOH A 31 192 192 HOH HOH . G 6 HOH A 32 193 193 HOH HOH . G 6 HOH A 33 194 194 HOH HOH . G 6 HOH A 34 195 195 HOH HOH . G 6 HOH A 35 196 196 HOH HOH . G 6 HOH A 36 197 197 HOH HOH . G 6 HOH A 37 198 198 HOH HOH . G 6 HOH A 38 199 199 HOH HOH . G 6 HOH A 39 200 200 HOH HOH . G 6 HOH A 40 201 201 HOH HOH . G 6 HOH A 41 202 202 HOH HOH . G 6 HOH A 42 203 203 HOH HOH . G 6 HOH A 43 204 204 HOH HOH . G 6 HOH A 44 205 205 HOH HOH . G 6 HOH A 45 206 206 HOH HOH . G 6 HOH A 46 207 207 HOH HOH . G 6 HOH A 47 208 208 HOH HOH . G 6 HOH A 48 209 209 HOH HOH . G 6 HOH A 49 210 210 HOH HOH . G 6 HOH A 50 211 211 HOH HOH . G 6 HOH A 51 212 212 HOH HOH . G 6 HOH A 52 214 214 HOH HOH . G 6 HOH A 53 215 215 HOH HOH . G 6 HOH A 54 216 216 HOH HOH . G 6 HOH A 55 217 217 HOH HOH . G 6 HOH A 56 218 218 HOH HOH . G 6 HOH A 57 219 219 HOH HOH . G 6 HOH A 58 220 220 HOH HOH . G 6 HOH A 59 221 221 HOH HOH . G 6 HOH A 60 222 222 HOH HOH . G 6 HOH A 61 223 223 HOH HOH . G 6 HOH A 62 224 224 HOH HOH . G 6 HOH A 63 225 225 HOH HOH . G 6 HOH A 64 226 226 HOH HOH . G 6 HOH A 65 228 228 HOH HOH . G 6 HOH A 66 229 229 HOH HOH . G 6 HOH A 67 230 230 HOH HOH . G 6 HOH A 68 231 231 HOH HOH . G 6 HOH A 69 232 232 HOH HOH . G 6 HOH A 70 233 233 HOH HOH . G 6 HOH A 71 234 234 HOH HOH . G 6 HOH A 72 235 235 HOH HOH . G 6 HOH A 73 236 236 HOH HOH . G 6 HOH A 74 237 237 HOH HOH . G 6 HOH A 75 238 238 HOH HOH . G 6 HOH A 76 239 239 HOH HOH . G 6 HOH A 77 240 240 HOH HOH . G 6 HOH A 78 241 241 HOH HOH . G 6 HOH A 79 242 242 HOH HOH . G 6 HOH A 80 243 243 HOH HOH . G 6 HOH A 81 244 244 HOH HOH . G 6 HOH A 82 245 245 HOH HOH . G 6 HOH A 83 246 246 HOH HOH . G 6 HOH A 84 247 247 HOH HOH . G 6 HOH A 85 248 248 HOH HOH . G 6 HOH A 86 249 249 HOH HOH . G 6 HOH A 87 250 250 HOH HOH . G 6 HOH A 88 251 251 HOH HOH . G 6 HOH A 89 252 252 HOH HOH . G 6 HOH A 90 253 253 HOH HOH . G 6 HOH A 91 254 254 HOH HOH . G 6 HOH A 92 255 255 HOH HOH . G 6 HOH A 93 256 256 HOH HOH . G 6 HOH A 94 257 257 HOH HOH . G 6 HOH A 95 258 258 HOH HOH . G 6 HOH A 96 259 259 HOH HOH . G 6 HOH A 97 260 260 HOH HOH . G 6 HOH A 98 261 261 HOH HOH . G 6 HOH A 99 262 262 HOH HOH . G 6 HOH A 100 263 263 HOH HOH . G 6 HOH A 101 264 264 HOH HOH . G 6 HOH A 102 265 265 HOH HOH . G 6 HOH A 103 266 266 HOH HOH . G 6 HOH A 104 267 267 HOH HOH . G 6 HOH A 105 268 268 HOH HOH . G 6 HOH A 106 269 269 HOH HOH . G 6 HOH A 107 270 270 HOH HOH . G 6 HOH A 108 271 271 HOH HOH . G 6 HOH A 109 272 272 HOH HOH . G 6 HOH A 110 273 273 HOH HOH . G 6 HOH A 111 274 274 HOH HOH . G 6 HOH A 112 275 275 HOH HOH . G 6 HOH A 113 276 276 HOH HOH . G 6 HOH A 114 277 277 HOH HOH . G 6 HOH A 115 278 278 HOH HOH . G 6 HOH A 116 279 279 HOH HOH . G 6 HOH A 117 280 280 HOH HOH . G 6 HOH A 118 281 281 HOH HOH . G 6 HOH A 119 282 282 HOH HOH . G 6 HOH A 120 283 283 HOH HOH . G 6 HOH A 121 284 284 HOH HOH . G 6 HOH A 122 285 285 HOH HOH . G 6 HOH A 123 286 286 HOH HOH . G 6 HOH A 124 287 287 HOH HOH . G 6 HOH A 125 288 288 HOH HOH . G 6 HOH A 126 289 289 HOH HOH . G 6 HOH A 127 290 290 HOH HOH . G 6 HOH A 128 291 291 HOH HOH . G 6 HOH A 129 292 292 HOH HOH . G 6 HOH A 130 293 293 HOH HOH . G 6 HOH A 131 294 294 HOH HOH . G 6 HOH A 132 295 295 HOH HOH . G 6 HOH A 133 296 296 HOH HOH . G 6 HOH A 134 297 297 HOH HOH . G 6 HOH A 135 298 298 HOH HOH . G 6 HOH A 136 299 299 HOH HOH . G 6 HOH A 137 301 301 HOH HOH . G 6 HOH A 138 302 302 HOH HOH . G 6 HOH A 139 303 303 HOH HOH . G 6 HOH A 140 304 304 HOH HOH . G 6 HOH A 141 305 305 HOH HOH . G 6 HOH A 142 306 306 HOH HOH . G 6 HOH A 143 307 307 HOH HOH . G 6 HOH A 144 308 308 HOH HOH . G 6 HOH A 145 309 309 HOH HOH . G 6 HOH A 146 310 310 HOH HOH . G 6 HOH A 147 311 311 HOH HOH . G 6 HOH A 148 312 312 HOH HOH . G 6 HOH A 149 313 313 HOH HOH . G 6 HOH A 150 314 314 HOH HOH . G 6 HOH A 151 315 315 HOH HOH . G 6 HOH A 152 316 316 HOH HOH . G 6 HOH A 153 317 317 HOH HOH . G 6 HOH A 154 318 318 HOH HOH . G 6 HOH A 155 319 319 HOH HOH . G 6 HOH A 156 320 320 HOH HOH . G 6 HOH A 157 321 321 HOH HOH . G 6 HOH A 158 322 322 HOH HOH . G 6 HOH A 159 323 300 HOH HOH . G 6 HOH A 160 324 324 HOH HOH . G 6 HOH A 161 325 325 HOH HOH . G 6 HOH A 162 326 326 HOH HOH . G 6 HOH A 163 327 327 HOH HOH . G 6 HOH A 164 328 328 HOH HOH . G 6 HOH A 165 329 329 HOH HOH . G 6 HOH A 166 330 330 HOH HOH . G 6 HOH A 167 331 331 HOH HOH . G 6 HOH A 168 332 332 HOH HOH . G 6 HOH A 169 333 333 HOH HOH . G 6 HOH A 170 334 334 HOH HOH . G 6 HOH A 171 336 336 HOH HOH . G 6 HOH A 172 337 337 HOH HOH . G 6 HOH A 173 338 338 HOH HOH . G 6 HOH A 174 339 339 HOH HOH . G 6 HOH A 175 340 340 HOH HOH . G 6 HOH A 176 341 341 HOH HOH . G 6 HOH A 177 342 342 HOH HOH . G 6 HOH A 178 343 343 HOH HOH . G 6 HOH A 179 344 344 HOH HOH . G 6 HOH A 180 345 345 HOH HOH . G 6 HOH A 181 347 347 HOH HOH . G 6 HOH A 182 348 348 HOH HOH . G 6 HOH A 183 349 349 HOH HOH . G 6 HOH A 184 351 351 HOH HOH . G 6 HOH A 185 352 352 HOH HOH . G 6 HOH A 186 353 353 HOH HOH . G 6 HOH A 187 354 354 HOH HOH . G 6 HOH A 188 358 358 HOH HOH . G 6 HOH A 189 359 359 HOH HOH . G 6 HOH A 190 360 360 HOH HOH . G 6 HOH A 191 361 361 HOH HOH . G 6 HOH A 192 362 362 HOH HOH . G 6 HOH A 193 363 363 HOH HOH . G 6 HOH A 194 364 364 HOH HOH . G 6 HOH A 195 365 365 HOH HOH . G 6 HOH A 196 366 366 HOH HOH . G 6 HOH A 197 367 367 HOH HOH . G 6 HOH A 198 369 369 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7ME . A . B 2 2.041 -5.148 -10.938 0.5 13.88 ? N1 7ME 160 A 1 HETATM 2 N N1 7ME . B . B 2 2.038 -5.178 -10.998 0.5 13.4 ? N1 7ME 160 A 1 HETATM 3 C C2 7ME . A . B 2 3.159 -5.416 -11.645 0.5 18.85 ? C2 7ME 160 A 1 HETATM 4 C C2 7ME . B . B 2 3.133 -5.432 -11.685 0.5 18.16 ? C2 7ME 160 A 1 HETATM 5 N N3 7ME . A . B 2 4.072 -4.439 -11.852 0.5 11.76 ? N3 7ME 160 A 1 HETATM 6 N N3 7ME . B . B 2 4.088 -4.495 -11.866 0.5 11.35 ? N3 7ME 160 A 1 HETATM 7 C C4 7ME . A . B 2 3.872 -3.175 -11.375 0.5 12.17 ? C4 7ME 160 A 1 HETATM 8 C C4 7ME . B . B 2 3.825 -3.255 -11.34 0.5 12.07 ? C4 7ME 160 A 1 HETATM 9 C C5 7ME . A . B 2 2.521 -1.501 -10.022 0.5 13.85 ? C5 7ME 160 A 1 HETATM 10 C C5 7ME . B . B 2 2.533 -1.487 -10.062 0.5 13.55 ? C5 7ME 160 A 1 HETATM 11 C C6 7ME . A . B 2 1.555 -1.492 -8.842 0.5 18.57 ? C6 7ME 160 A 1 HETATM 12 C C6 7ME . B . B 2 1.24 -1.277 -9.258 0.5 18.32 ? C6 7ME 160 A 1 HETATM 13 C C7 7ME . A . B 2 0.301 -2.322 -9.051 0.5 14.76 ? C7 7ME 160 A 1 HETATM 14 C C7 7ME . B . B 2 0.71 -2.54 -8.648 0.5 13.13 ? C7 7ME 160 A 1 HETATM 15 C C8 7ME . A . B 2 0.578 -3.751 -9.526 0.5 17.42 ? C8 7ME 160 A 1 HETATM 16 C C8 7ME . B . B 2 0.458 -3.705 -9.656 0.5 13.15 ? C8 7ME 160 A 1 HETATM 17 C C13 7ME . A . B 2 -0.578 -2.301 -7.801 0.5 16.88 ? C13 7ME 160 A 1 HETATM 18 C C13 7ME . B . B 2 -0.526 -2.146 -7.848 0.5 12.23 ? C13 7ME 160 A 1 HETATM 19 C C4A 7ME . A . B 2 2.752 -2.9 -10.574 0.5 13.67 ? C4A 7ME 160 A 1 HETATM 20 C C4A 7ME . B . B 2 2.683 -2.912 -10.599 0.5 12 ? C4A 7ME 160 A 1 HETATM 21 C C8A 7ME . A . B 2 1.83 -3.919 -10.372 0.5 11.87 ? C8A 7ME 160 A 1 HETATM 22 C C8A 7ME . B . B 2 1.747 -3.929 -10.433 0.5 12.19 ? C8A 7ME 160 A 1 HETATM 23 N NA2 7ME . A . B 2 3.341 -6.678 -12.138 0.5 13.74 ? NA2 7ME 160 A 1 HETATM 24 N NA2 7ME . B . B 2 3.342 -6.683 -12.144 0.5 12.73 ? NA2 7ME 160 A 1 HETATM 25 N NA4 7ME . A . B 2 4.809 -2.228 -11.63 0.5 13.5 ? NA4 7ME 160 A 1 HETATM 26 N NA4 7ME . B . B 2 4.767 -2.355 -11.569 0.5 13.58 ? NA4 7ME 160 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #