data_3QZ1 # _model_server_result.job_id XgLcFD6z7xth9NspT8IdPQ _model_server_result.datetime_utc '2024-11-25 09:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 3QZ1 # _exptl.entry_id 3QZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.09 _cell.angle_gamma 90 _cell.entry_id 3QZ1 _cell.length_a 67.871 _cell.length_b 167.998 _cell.length_c 111.843 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,R 2 1 C,K,L,M,S 3 1 D,N,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 427 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 427 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.672 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 186 n n CHA C4D HEM doub 187 n n CHA HHA HEM sing 188 n n CHB C4A HEM sing 189 n n CHB C1B HEM doub 190 n n CHB HHB HEM sing 191 n n CHC C4B HEM sing 192 n n CHC C1C HEM doub 193 n n CHC HHC HEM sing 194 n n CHD C4C HEM doub 195 n n CHD C1D HEM sing 196 n n CHD HHD HEM sing 197 n n C1A C2A HEM doub 198 n y C1A NA HEM sing 199 n y C2A C3A HEM sing 200 n y C2A CAA HEM sing 201 n n C3A C4A HEM doub 202 n y C3A CMA HEM sing 203 n n C4A NA HEM sing 204 n y CMA HMA HEM sing 205 n n CMA HMAA HEM sing 206 n n CMA HMAB HEM sing 207 n n CAA CBA HEM sing 208 n n CAA HAA HEM sing 209 n n CAA HAAA HEM sing 210 n n CBA CGA HEM sing 211 n n CBA HBA HEM sing 212 n n CBA HBAA HEM sing 213 n n CGA O1A HEM doub 214 n n CGA O2A HEM sing 215 n n C1B C2B HEM sing 216 n n C1B NB HEM sing 217 n n C2B C3B HEM doub 218 n n C2B CMB HEM sing 219 n n C3B C4B HEM sing 220 n n C3B CAB HEM sing 221 n n C4B NB HEM doub 222 n n CMB HMB HEM sing 223 n n CMB HMBA HEM sing 224 n n CMB HMBB HEM sing 225 n n CAB CBB HEM doub 226 n n CAB HAB HEM sing 227 n n CBB HBB HEM sing 228 n n CBB HBBA HEM sing 229 n n C1C C2C HEM sing 230 n y C1C NC HEM sing 231 n y C2C C3C HEM doub 232 n y C2C CMC HEM sing 233 n n C3C C4C HEM sing 234 n y C3C CAC HEM sing 235 n n C4C NC HEM sing 236 n y CMC HMC HEM sing 237 n n CMC HMCA HEM sing 238 n n CMC HMCB HEM sing 239 n n CAC CBC HEM doub 240 n n CAC HAC HEM sing 241 n n CBC HBC HEM sing 242 n n CBC HBCA HEM sing 243 n n C1D C2D HEM sing 244 n n C1D ND HEM doub 245 n n C2D C3D HEM doub 246 n n C2D CMD HEM sing 247 n n C3D C4D HEM sing 248 n n C3D CAD HEM sing 249 n n C4D ND HEM sing 250 n n CMD HMD HEM sing 251 n n CMD HMDA HEM sing 252 n n CMD HMDB HEM sing 253 n n CAD CBD HEM sing 254 n n CAD HAD HEM sing 255 n n CAD HADA HEM sing 256 n n CBD CGD HEM sing 257 n n CBD HBD HEM sing 258 n n CBD HBDA HEM sing 259 n n CGD O1D HEM doub 260 n n CGD O2D HEM sing 261 n n O2A H2A HEM sing 262 n n O2D H2D HEM sing 263 n n FE NA HEM sing 264 n n FE NB HEM sing 265 n n FE NC HEM sing 266 n n FE ND HEM sing 267 n n # _atom_sites.entry_id 3QZ1 _atom_sites.fract_transf_matrix[1][1] 0.014734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000023 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 500 500 HEM HEM . F 3 3QZ A 1 501 501 3QZ 3QZ . G 3 3QZ A 1 502 502 3QZ 3QZ . H 2 HEM B 1 500 500 HEM HEM . I 3 3QZ B 1 501 501 3QZ 3QZ . J 3 3QZ B 1 502 502 3QZ 3QZ . K 2 HEM C 1 500 500 HEM HEM . L 3 3QZ C 1 501 501 3QZ 3QZ . M 3 3QZ C 1 502 502 3QZ 3QZ . N 2 HEM D 1 500 500 HEM HEM . O 3 3QZ D 1 501 501 3QZ 3QZ . P 3 3QZ D 1 502 502 3QZ 3QZ . Q 4 HOH A 1 601 3 HOH TIP . Q 4 HOH A 2 602 6 HOH TIP . Q 4 HOH A 3 603 7 HOH TIP . Q 4 HOH A 4 604 19 HOH TIP . Q 4 HOH A 5 605 20 HOH TIP . Q 4 HOH A 6 606 25 HOH TIP . Q 4 HOH A 7 607 28 HOH TIP . Q 4 HOH A 8 608 29 HOH TIP . Q 4 HOH A 9 609 33 HOH TIP . Q 4 HOH A 10 610 39 HOH TIP . Q 4 HOH A 11 611 45 HOH TIP . Q 4 HOH A 12 612 46 HOH TIP . Q 4 HOH A 13 613 51 HOH TIP . Q 4 HOH A 14 614 53 HOH TIP . Q 4 HOH A 15 615 59 HOH TIP . Q 4 HOH A 16 616 66 HOH TIP . Q 4 HOH A 17 617 70 HOH TIP . Q 4 HOH A 18 618 71 HOH TIP . Q 4 HOH A 19 619 74 HOH TIP . Q 4 HOH A 20 620 76 HOH TIP . Q 4 HOH A 21 621 81 HOH TIP . Q 4 HOH A 22 622 86 HOH TIP . R 4 HOH B 1 601 4 HOH TIP . R 4 HOH B 2 602 10 HOH TIP . R 4 HOH B 3 603 11 HOH TIP . R 4 HOH B 4 604 13 HOH TIP . R 4 HOH B 5 605 15 HOH TIP . R 4 HOH B 6 606 21 HOH TIP . R 4 HOH B 7 607 26 HOH TIP . R 4 HOH B 8 608 30 HOH TIP . R 4 HOH B 9 609 31 HOH TIP . R 4 HOH B 10 610 40 HOH TIP . R 4 HOH B 11 611 44 HOH TIP . R 4 HOH B 12 612 48 HOH TIP . R 4 HOH B 13 613 49 HOH TIP . R 4 HOH B 14 614 50 HOH TIP . R 4 HOH B 15 615 52 HOH TIP . R 4 HOH B 16 616 60 HOH TIP . R 4 HOH B 17 617 61 HOH TIP . R 4 HOH B 18 618 62 HOH TIP . R 4 HOH B 19 619 63 HOH TIP . R 4 HOH B 20 620 65 HOH TIP . R 4 HOH B 21 621 67 HOH TIP . R 4 HOH B 22 622 68 HOH TIP . R 4 HOH B 23 623 73 HOH TIP . R 4 HOH B 24 624 80 HOH TIP . R 4 HOH B 25 625 85 HOH TIP . R 4 HOH B 26 626 87 HOH TIP . R 4 HOH B 27 627 88 HOH TIP . R 4 HOH B 28 628 89 HOH TIP . S 4 HOH C 1 601 2 HOH TIP . S 4 HOH C 2 602 14 HOH TIP . S 4 HOH C 3 603 17 HOH TIP . S 4 HOH C 4 604 22 HOH TIP . S 4 HOH C 5 605 23 HOH TIP . S 4 HOH C 6 606 32 HOH TIP . S 4 HOH C 7 607 34 HOH TIP . S 4 HOH C 8 608 35 HOH TIP . S 4 HOH C 9 609 37 HOH TIP . S 4 HOH C 10 610 41 HOH TIP . S 4 HOH C 11 611 43 HOH TIP . S 4 HOH C 12 612 47 HOH TIP . S 4 HOH C 13 613 55 HOH TIP . S 4 HOH C 14 614 58 HOH TIP . S 4 HOH C 15 615 72 HOH TIP . S 4 HOH C 16 616 77 HOH TIP . S 4 HOH C 17 617 78 HOH TIP . S 4 HOH C 18 618 79 HOH TIP . S 4 HOH C 19 619 84 HOH TIP . S 4 HOH C 20 620 90 HOH TIP . S 4 HOH C 21 621 91 HOH TIP . S 4 HOH C 22 622 94 HOH TIP . T 4 HOH D 1 601 1 HOH TIP . T 4 HOH D 2 602 5 HOH TIP . T 4 HOH D 3 603 8 HOH TIP . T 4 HOH D 4 604 9 HOH TIP . T 4 HOH D 5 605 12 HOH TIP . T 4 HOH D 6 606 16 HOH TIP . T 4 HOH D 7 607 18 HOH TIP . T 4 HOH D 8 608 24 HOH TIP . T 4 HOH D 9 609 27 HOH TIP . T 4 HOH D 10 610 36 HOH TIP . T 4 HOH D 11 611 38 HOH TIP . T 4 HOH D 12 612 42 HOH TIP . T 4 HOH D 13 613 54 HOH TIP . T 4 HOH D 14 614 56 HOH TIP . T 4 HOH D 15 615 57 HOH TIP . T 4 HOH D 16 616 64 HOH TIP . T 4 HOH D 17 617 69 HOH TIP . T 4 HOH D 18 618 75 HOH TIP . T 4 HOH D 19 619 82 HOH TIP . T 4 HOH D 20 620 83 HOH TIP . T 4 HOH D 21 621 92 HOH TIP . T 4 HOH D 22 622 93 HOH TIP . T 4 HOH D 23 623 95 HOH TIP . T 4 HOH D 24 624 96 HOH TIP . T 4 HOH D 25 625 97 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 2 33.233 0.247 52.466 1 105.66 ? CHA HEM 500 B 1 HETATM 2 C CHB HEM . . . H 2 30 3.723 51.58 1 133.98 ? CHB HEM 500 B 1 HETATM 3 C CHC HEM . . . H 2 28.294 1.204 47.827 1 102.56 ? CHC HEM 500 B 1 HETATM 4 C CHD HEM . . . H 2 31.53 -2.243 48.714 1 139.15 ? CHD HEM 500 B 1 HETATM 5 C C1A HEM . . . H 2 32.522 1.413 52.581 1 88.99 ? C1A HEM 500 B 1 HETATM 6 C C2A HEM . . . H 2 32.717 2.442 53.591 1 112.18 ? C2A HEM 500 B 1 HETATM 7 C C3A HEM . . . H 2 31.817 3.421 53.343 1 114.75 ? C3A HEM 500 B 1 HETATM 8 C C4A HEM . . . H 2 31.034 3.023 52.177 1 113 ? C4A HEM 500 B 1 HETATM 9 C CMA HEM . . . H 2 31.596 4.729 54.124 1 51.25 ? CMA HEM 500 B 1 HETATM 10 C CAA HEM . . . H 2 33.775 2.356 54.719 1 51.25 ? CAA HEM 500 B 1 HETATM 11 C CBA HEM . . . H 2 35.095 3.052 54.357 1 73.53 ? CBA HEM 500 B 1 HETATM 12 C CGA HEM . . . H 2 36.013 3.339 55.558 1 115.83 ? CGA HEM 500 B 1 HETATM 13 O O1A HEM . . . H 2 36.454 4.548 55.65 1 107.4 ? O1A HEM 500 B 1 HETATM 14 O O2A HEM . . . H 2 36.269 2.423 56.343 1 64.9 ? O2A HEM 500 B 1 HETATM 15 C C1B HEM . . . H 2 29.252 3.35 50.493 1 123.01 ? C1B HEM 500 B 1 HETATM 16 C C2B HEM . . . H 2 28.165 4.13 49.92 1 127.47 ? C2B HEM 500 B 1 HETATM 17 C C3B HEM . . . H 2 27.687 3.424 48.867 1 105.28 ? C3B HEM 500 B 1 HETATM 18 C C4B HEM . . . H 2 28.455 2.209 48.772 1 106.16 ? C4B HEM 500 B 1 HETATM 19 C CMB HEM . . . H 2 27.687 5.489 50.448 1 103.83 ? CMB HEM 500 B 1 HETATM 20 C CAB HEM . . . H 2 26.541 3.779 47.918 1 116.26 ? CAB HEM 500 B 1 HETATM 21 C CBB HEM . . . H 2 26.901 4.854 46.874 1 98.44 ? CBB HEM 500 B 1 HETATM 22 C C1C HEM . . . H 2 29.042 0.036 47.745 1 72.71 ? C1C HEM 500 B 1 HETATM 23 C C2C HEM . . . H 2 28.834 -1.008 46.727 1 107.72 ? C2C HEM 500 B 1 HETATM 24 C C3C HEM . . . H 2 29.73 -1.969 46.968 1 105.9 ? C3C HEM 500 B 1 HETATM 25 C C4C HEM . . . H 2 30.508 -1.552 48.128 1 94.82 ? C4C HEM 500 B 1 HETATM 26 C CMC HEM . . . H 2 27.757 -0.932 45.623 1 105.61 ? CMC HEM 500 B 1 HETATM 27 C CAC HEM . . . H 2 29.968 -3.29 46.219 1 115.46 ? CAC HEM 500 B 1 HETATM 28 C CBC HEM . . . H 2 30.783 -3.148 44.916 1 114.78 ? CBC HEM 500 B 1 HETATM 29 C C1D HEM . . . H 2 32.275 -1.886 49.809 1 78.2 ? C1D HEM 500 B 1 HETATM 30 C C2D HEM . . . H 2 33.348 -2.671 50.395 1 118.56 ? C2D HEM 500 B 1 HETATM 31 C C3D HEM . . . H 2 33.828 -1.975 51.444 1 115.42 ? C3D HEM 500 B 1 HETATM 32 C C4D HEM . . . H 2 33.055 -0.748 51.519 1 78.49 ? C4D HEM 500 B 1 HETATM 33 C CMD HEM . . . H 2 33.82 -4.058 49.889 1 58.56 ? CMD HEM 500 B 1 HETATM 34 C CAD HEM . . . H 2 34.969 -2.407 52.385 1 97.09 ? CAD HEM 500 B 1 HETATM 35 C CBD HEM . . . H 2 36.348 -1.896 51.873 1 105.37 ? CBD HEM 500 B 1 HETATM 36 C CGD HEM . . . H 2 37.466 -2.311 52.785 1 122.64 ? CGD HEM 500 B 1 HETATM 37 O O1D HEM . . . H 2 38.239 -3.218 52.432 1 123.29 ? O1D HEM 500 B 1 HETATM 38 O O2D HEM . . . H 2 37.529 -1.683 53.863 1 80.47 ? O2D HEM 500 B 1 HETATM 39 N NA HEM . . . H 2 31.502 1.792 51.744 1 123.25 ? NA HEM 500 B 1 HETATM 40 N NB HEM . . . H 2 29.42 2.173 49.776 1 132.32 ? NB HEM 500 B 1 HETATM 41 N NC HEM . . . H 2 30.082 -0.323 48.596 1 110.32 ? NC HEM 500 B 1 HETATM 42 N ND HEM . . . H 2 32.106 -0.697 50.518 1 93.35 ? ND HEM 500 B 1 HETATM 43 FE FE HEM . . . H 2 30.822 0.74 50.167 1 51.25 ? FE HEM 500 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #