data_3QZ3 # _model_server_result.job_id HWwrR_4YnUVeUQ1XD0NB2Q _model_server_result.datetime_utc '2025-07-30 15:45:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":183}' # _entry.id 3QZ3 # _exptl.entry_id 3QZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QZ3 _cell.length_a 144.96 _cell.length_b 144.96 _cell.length_c 136.921 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA 24-meric 24 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2,3,4,5,6,7,8 A,C,D,F,G,H,J 2 1 B,E,I 3 1,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 9 A PHE 6 1_555 A N MSE 10 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 10 A MSE 7 1_555 A N LEU 11 A LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALA 14 A ALA 11 1_555 A N MSE 15 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 15 A MSE 12 1_555 A N VAL 16 A VAL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C GLN 35 A GLN 32 1_555 A N MSE 36 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 36 A MSE 33 1_555 A N SER 37 A SER 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C GLU 59 A GLU 56 1_555 A N MSE 60 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 60 A MSE 57 1_555 A N GLN 61 A GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C HIS 62 A HIS 59 1_555 A N MSE 63 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale10 A C MSE 63 A MSE 60 1_555 A N GLN 64 A GLN 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 B C MSE 10 B MSE 7 1_555 B N LEU 11 B LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C ALA 14 B ALA 11 1_555 B N MSE 15 B MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C MSE 15 B MSE 12 1_555 B N VAL 16 B VAL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 B C GLN 35 B GLN 32 1_555 B N MSE 36 B MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C MSE 36 B MSE 33 1_555 B N SER 37 B SER 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C GLU 59 B GLU 56 1_555 B N MSE 60 B MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 B C MSE 60 B MSE 57 1_555 B N GLN 61 B GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C HIS 62 B HIS 59 1_555 B N MSE 63 B MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C MSE 63 B MSE 60 1_555 B N GLN 64 B GLN 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 C C MSE 10 C MSE 7 1_555 C N LEU 11 C LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 C C ALA 14 C ALA 11 1_555 C N MSE 15 C MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale22 C C MSE 15 C MSE 12 1_555 C N VAL 16 C VAL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale23 C C GLN 35 C GLN 32 1_555 C N MSE 36 C MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 C C MSE 36 C MSE 33 1_555 C N SER 37 C SER 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale25 C C GLU 59 C GLU 56 1_555 C N MSE 60 C MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 C C MSE 60 C MSE 57 1_555 C N GLN 61 C GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale27 C C HIS 62 C HIS 59 1_555 C N MSE 63 C MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale28 C C MSE 63 C MSE 60 1_555 C N GLN 64 C GLN 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3QZ3 _atom_sites.fract_transf_matrix[1][1] 0.006898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EDO A 1 182 2 EDO EDO . E 2 EDO B 1 182 3 EDO EDO . F 2 EDO C 1 182 1 EDO EDO . G 2 EDO C 1 183 4 EDO EDO . H 3 HOH A 1 183 1 HOH HOH . H 3 HOH A 2 184 6 HOH HOH . H 3 HOH A 3 185 13 HOH HOH . H 3 HOH A 4 186 15 HOH HOH . H 3 HOH A 5 187 16 HOH HOH . H 3 HOH A 6 188 18 HOH HOH . H 3 HOH A 7 189 20 HOH HOH . H 3 HOH A 8 190 21 HOH HOH . H 3 HOH A 9 191 22 HOH HOH . H 3 HOH A 10 192 25 HOH HOH . H 3 HOH A 11 193 30 HOH HOH . H 3 HOH A 12 194 31 HOH HOH . H 3 HOH A 13 195 34 HOH HOH . H 3 HOH A 14 196 37 HOH HOH . H 3 HOH A 15 197 39 HOH HOH . H 3 HOH A 16 198 42 HOH HOH . H 3 HOH A 17 199 46 HOH HOH . H 3 HOH A 18 200 47 HOH HOH . H 3 HOH A 19 201 48 HOH HOH . H 3 HOH A 20 202 49 HOH HOH . H 3 HOH A 21 203 51 HOH HOH . H 3 HOH A 22 204 52 HOH HOH . H 3 HOH A 23 205 54 HOH HOH . H 3 HOH A 24 206 56 HOH HOH . H 3 HOH A 25 207 57 HOH HOH . H 3 HOH A 26 208 58 HOH HOH . H 3 HOH A 27 209 64 HOH HOH . H 3 HOH A 28 210 66 HOH HOH . H 3 HOH A 29 211 68 HOH HOH . H 3 HOH A 30 212 70 HOH HOH . H 3 HOH A 31 213 71 HOH HOH . H 3 HOH A 32 214 73 HOH HOH . H 3 HOH A 33 215 79 HOH HOH . H 3 HOH A 34 216 83 HOH HOH . H 3 HOH A 35 217 86 HOH HOH . H 3 HOH A 36 218 87 HOH HOH . H 3 HOH A 37 219 88 HOH HOH . H 3 HOH A 38 220 90 HOH HOH . H 3 HOH A 39 221 91 HOH HOH . H 3 HOH A 40 222 92 HOH HOH . H 3 HOH A 41 223 96 HOH HOH . H 3 HOH A 42 224 98 HOH HOH . H 3 HOH A 43 225 101 HOH HOH . H 3 HOH A 44 226 102 HOH HOH . H 3 HOH A 45 227 105 HOH HOH . H 3 HOH A 46 228 106 HOH HOH . H 3 HOH A 47 229 107 HOH HOH . H 3 HOH A 48 230 110 HOH HOH . H 3 HOH A 49 231 114 HOH HOH . H 3 HOH A 50 232 116 HOH HOH . H 3 HOH A 51 233 117 HOH HOH . H 3 HOH A 52 234 121 HOH HOH . H 3 HOH A 53 235 123 HOH HOH . H 3 HOH A 54 236 124 HOH HOH . H 3 HOH A 55 237 125 HOH HOH . H 3 HOH A 56 238 127 HOH HOH . H 3 HOH A 57 239 130 HOH HOH . H 3 HOH A 58 240 134 HOH HOH . H 3 HOH A 59 241 135 HOH HOH . H 3 HOH A 60 242 136 HOH HOH . H 3 HOH A 61 243 137 HOH HOH . H 3 HOH A 62 244 139 HOH HOH . H 3 HOH A 63 245 142 HOH HOH . H 3 HOH A 64 246 146 HOH HOH . H 3 HOH A 65 247 147 HOH HOH . I 3 HOH B 1 183 2 HOH HOH . I 3 HOH B 2 184 5 HOH HOH . I 3 HOH B 3 185 11 HOH HOH . I 3 HOH B 4 186 12 HOH HOH . I 3 HOH B 5 187 19 HOH HOH . I 3 HOH B 6 188 41 HOH HOH . I 3 HOH B 7 189 50 HOH HOH . I 3 HOH B 8 190 62 HOH HOH . I 3 HOH B 9 191 63 HOH HOH . I 3 HOH B 10 192 74 HOH HOH . I 3 HOH B 11 193 75 HOH HOH . I 3 HOH B 12 194 76 HOH HOH . I 3 HOH B 13 195 77 HOH HOH . I 3 HOH B 14 196 78 HOH HOH . I 3 HOH B 15 197 84 HOH HOH . I 3 HOH B 16 198 85 HOH HOH . I 3 HOH B 17 199 94 HOH HOH . I 3 HOH B 18 200 108 HOH HOH . I 3 HOH B 19 201 118 HOH HOH . I 3 HOH B 20 202 119 HOH HOH . I 3 HOH B 21 203 128 HOH HOH . I 3 HOH B 22 204 129 HOH HOH . I 3 HOH B 23 205 131 HOH HOH . I 3 HOH B 24 206 138 HOH HOH . I 3 HOH B 25 207 144 HOH HOH . J 3 HOH C 1 184 3 HOH HOH . J 3 HOH C 2 185 4 HOH HOH . J 3 HOH C 3 186 7 HOH HOH . J 3 HOH C 4 187 8 HOH HOH . J 3 HOH C 5 188 9 HOH HOH . J 3 HOH C 6 189 10 HOH HOH . J 3 HOH C 7 190 14 HOH HOH . J 3 HOH C 8 191 17 HOH HOH . J 3 HOH C 9 192 23 HOH HOH . J 3 HOH C 10 193 24 HOH HOH . J 3 HOH C 11 194 26 HOH HOH . J 3 HOH C 12 195 27 HOH HOH . J 3 HOH C 13 196 28 HOH HOH . J 3 HOH C 14 197 29 HOH HOH . J 3 HOH C 15 198 32 HOH HOH . J 3 HOH C 16 199 33 HOH HOH . J 3 HOH C 17 200 35 HOH HOH . J 3 HOH C 18 201 36 HOH HOH . J 3 HOH C 19 202 38 HOH HOH . J 3 HOH C 20 203 40 HOH HOH . J 3 HOH C 21 204 43 HOH HOH . J 3 HOH C 22 205 44 HOH HOH . J 3 HOH C 23 206 45 HOH HOH . J 3 HOH C 24 207 53 HOH HOH . J 3 HOH C 25 208 55 HOH HOH . J 3 HOH C 26 209 59 HOH HOH . J 3 HOH C 27 210 60 HOH HOH . J 3 HOH C 28 211 61 HOH HOH . J 3 HOH C 29 212 65 HOH HOH . J 3 HOH C 30 213 67 HOH HOH . J 3 HOH C 31 214 69 HOH HOH . J 3 HOH C 32 215 72 HOH HOH . J 3 HOH C 33 216 80 HOH HOH . J 3 HOH C 34 217 81 HOH HOH . J 3 HOH C 35 218 82 HOH HOH . J 3 HOH C 36 219 89 HOH HOH . J 3 HOH C 37 220 93 HOH HOH . J 3 HOH C 38 221 95 HOH HOH . J 3 HOH C 39 222 97 HOH HOH . J 3 HOH C 40 223 99 HOH HOH . J 3 HOH C 41 224 100 HOH HOH . J 3 HOH C 42 225 103 HOH HOH . J 3 HOH C 43 226 104 HOH HOH . J 3 HOH C 44 227 109 HOH HOH . J 3 HOH C 45 228 111 HOH HOH . J 3 HOH C 46 229 112 HOH HOH . J 3 HOH C 47 230 113 HOH HOH . J 3 HOH C 48 231 115 HOH HOH . J 3 HOH C 49 232 120 HOH HOH . J 3 HOH C 50 233 122 HOH HOH . J 3 HOH C 51 234 126 HOH HOH . J 3 HOH C 52 235 132 HOH HOH . J 3 HOH C 53 236 133 HOH HOH . J 3 HOH C 54 237 140 HOH HOH . J 3 HOH C 55 238 141 HOH HOH . J 3 HOH C 56 239 143 HOH HOH . J 3 HOH C 57 240 145 HOH HOH . J 3 HOH C 58 241 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 -26.74 -38.344 -37.141 1 67.71 ? C1 EDO 183 C 1 HETATM 2 O O1 EDO . . . G 2 -26.223 -37.195 -37.824 1 61 ? O1 EDO 183 C 1 HETATM 3 C C2 EDO . . . G 2 -28.214 -38.513 -37.501 1 64.87 ? C2 EDO 183 C 1 HETATM 4 O O2 EDO . . . G 2 -28.738 -39.624 -36.764 1 67.98 ? O2 EDO 183 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #