data_3QZI # _model_server_result.job_id 8sl4ks5iS4cmM8v65toLzQ _model_server_result.datetime_utc '2025-02-05 04:42:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":512}' # _entry.id 3QZI # _exptl.entry_id 3QZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-5-nitro-2-[(pyrimidin-5-ylmethyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QZI _cell.length_a 53.67 _cell.length_b 71.72 _cell.length_c 72.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H10 Cl N5 O3' _chem_comp.formula_weight 307.693 _chem_comp.id X72 _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-5-nitro-2-[(pyrimidin-5-ylmethyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C08 X72 sing 385 n n N01 C13 X72 sing 386 n n N01 HN01 X72 sing 387 n n N02 C12 X72 sing 388 n n N02 H102 X72 sing 389 n n N02 H202 X72 sing 390 n n N04 C16 X72 doub 391 n y N05 O19 X72 sing 392 n n C06 C11 X72 sing 393 n y C06 H06 X72 sing 394 n n C07 C06 X72 doub 395 n y C07 C08 X72 sing 396 n y C08 C09 X72 doub 397 n y C09 C10 X72 sing 398 n y C09 H09 X72 sing 399 n n C10 CL21 X72 sing 400 n n C11 N05 X72 sing 401 n n C11 C10 X72 doub 402 n y C12 C07 X72 sing 403 n n C13 C14 X72 sing 404 n n C13 H113 X72 sing 405 n n C13 H213 X72 sing 406 n n C14 C15 X72 sing 407 n y C15 N03 X72 doub 408 n y C15 H15 X72 sing 409 n n C16 N03 X72 sing 410 n y C16 H16 X72 sing 411 n n C17 C14 X72 doub 412 n y C17 N04 X72 sing 413 n y C17 H17 X72 sing 414 n n O18 C12 X72 doub 415 n n O20 N05 X72 doub 416 n n # _atom_sites.entry_id 3QZI _atom_sites.fract_transf_matrix[1][1] 0.018632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 511 1 EDO EDO . C 3 X72 A 1 512 1 X72 X72 . D 4 HOH A 1 299 1 HOH HOH . D 4 HOH A 2 300 2 HOH HOH . D 4 HOH A 3 301 3 HOH HOH . D 4 HOH A 4 302 4 HOH HOH . D 4 HOH A 5 303 5 HOH HOH . D 4 HOH A 6 304 6 HOH HOH . D 4 HOH A 7 305 7 HOH HOH . D 4 HOH A 8 306 8 HOH HOH . D 4 HOH A 9 307 9 HOH HOH . D 4 HOH A 10 308 10 HOH HOH . D 4 HOH A 11 309 11 HOH HOH . D 4 HOH A 12 310 12 HOH HOH . D 4 HOH A 13 311 13 HOH HOH . D 4 HOH A 14 312 14 HOH HOH . D 4 HOH A 15 313 15 HOH HOH . D 4 HOH A 16 314 16 HOH HOH . D 4 HOH A 17 315 17 HOH HOH . D 4 HOH A 18 316 18 HOH HOH . D 4 HOH A 19 317 19 HOH HOH . D 4 HOH A 20 318 20 HOH HOH . D 4 HOH A 21 319 21 HOH HOH . D 4 HOH A 22 320 22 HOH HOH . D 4 HOH A 23 321 23 HOH HOH . D 4 HOH A 24 322 24 HOH HOH . D 4 HOH A 25 323 25 HOH HOH . D 4 HOH A 26 324 26 HOH HOH . D 4 HOH A 27 325 27 HOH HOH . D 4 HOH A 28 326 28 HOH HOH . D 4 HOH A 29 327 29 HOH HOH . D 4 HOH A 30 328 30 HOH HOH . D 4 HOH A 31 329 31 HOH HOH . D 4 HOH A 32 330 32 HOH HOH . D 4 HOH A 33 331 33 HOH HOH . D 4 HOH A 34 332 34 HOH HOH . D 4 HOH A 35 333 35 HOH HOH . D 4 HOH A 36 334 36 HOH HOH . D 4 HOH A 37 335 37 HOH HOH . D 4 HOH A 38 336 38 HOH HOH . D 4 HOH A 39 337 39 HOH HOH . D 4 HOH A 40 338 40 HOH HOH . D 4 HOH A 41 339 41 HOH HOH . D 4 HOH A 42 340 42 HOH HOH . D 4 HOH A 43 341 43 HOH HOH . D 4 HOH A 44 342 44 HOH HOH . D 4 HOH A 45 343 45 HOH HOH . D 4 HOH A 46 344 46 HOH HOH . D 4 HOH A 47 345 47 HOH HOH . D 4 HOH A 48 346 48 HOH HOH . D 4 HOH A 49 347 49 HOH HOH . D 4 HOH A 50 348 50 HOH HOH . D 4 HOH A 51 349 51 HOH HOH . D 4 HOH A 52 350 52 HOH HOH . D 4 HOH A 53 351 53 HOH HOH . D 4 HOH A 54 352 54 HOH HOH . D 4 HOH A 55 353 55 HOH HOH . D 4 HOH A 56 354 56 HOH HOH . D 4 HOH A 57 355 57 HOH HOH . D 4 HOH A 58 356 58 HOH HOH . D 4 HOH A 59 357 59 HOH HOH . D 4 HOH A 60 358 60 HOH HOH . D 4 HOH A 61 359 61 HOH HOH . D 4 HOH A 62 360 62 HOH HOH . D 4 HOH A 63 361 63 HOH HOH . D 4 HOH A 64 362 64 HOH HOH . D 4 HOH A 65 363 65 HOH HOH . D 4 HOH A 66 364 66 HOH HOH . D 4 HOH A 67 365 67 HOH HOH . D 4 HOH A 68 366 68 HOH HOH . D 4 HOH A 69 367 69 HOH HOH . D 4 HOH A 70 368 70 HOH HOH . D 4 HOH A 71 369 71 HOH HOH . D 4 HOH A 72 370 72 HOH HOH . D 4 HOH A 73 371 73 HOH HOH . D 4 HOH A 74 372 74 HOH HOH . D 4 HOH A 75 373 75 HOH HOH . D 4 HOH A 76 374 76 HOH HOH . D 4 HOH A 77 375 77 HOH HOH . D 4 HOH A 78 376 78 HOH HOH . D 4 HOH A 79 377 79 HOH HOH . D 4 HOH A 80 378 80 HOH HOH . D 4 HOH A 81 379 81 HOH HOH . D 4 HOH A 82 380 82 HOH HOH . D 4 HOH A 83 381 83 HOH HOH . D 4 HOH A 84 382 84 HOH HOH . D 4 HOH A 85 383 85 HOH HOH . D 4 HOH A 86 384 86 HOH HOH . D 4 HOH A 87 385 87 HOH HOH . D 4 HOH A 88 386 88 HOH HOH . D 4 HOH A 89 387 89 HOH HOH . D 4 HOH A 90 388 90 HOH HOH . D 4 HOH A 91 389 91 HOH HOH . D 4 HOH A 92 390 92 HOH HOH . D 4 HOH A 93 391 93 HOH HOH . D 4 HOH A 94 392 94 HOH HOH . D 4 HOH A 95 393 95 HOH HOH . D 4 HOH A 96 394 96 HOH HOH . D 4 HOH A 97 395 97 HOH HOH . D 4 HOH A 98 396 98 HOH HOH . D 4 HOH A 99 397 99 HOH HOH . D 4 HOH A 100 398 100 HOH HOH . D 4 HOH A 101 399 101 HOH HOH . D 4 HOH A 102 400 102 HOH HOH . D 4 HOH A 103 401 103 HOH HOH . D 4 HOH A 104 402 104 HOH HOH . D 4 HOH A 105 403 105 HOH HOH . D 4 HOH A 106 404 106 HOH HOH . D 4 HOH A 107 405 107 HOH HOH . D 4 HOH A 108 406 108 HOH HOH . D 4 HOH A 109 407 109 HOH HOH . D 4 HOH A 110 408 110 HOH HOH . D 4 HOH A 111 409 111 HOH HOH . D 4 HOH A 112 410 112 HOH HOH . D 4 HOH A 113 411 113 HOH HOH . D 4 HOH A 114 412 114 HOH HOH . D 4 HOH A 115 413 115 HOH HOH . D 4 HOH A 116 414 116 HOH HOH . D 4 HOH A 117 415 117 HOH HOH . D 4 HOH A 118 416 118 HOH HOH . D 4 HOH A 119 417 119 HOH HOH . D 4 HOH A 120 418 120 HOH HOH . D 4 HOH A 121 419 121 HOH HOH . D 4 HOH A 122 420 122 HOH HOH . D 4 HOH A 123 421 123 HOH HOH . D 4 HOH A 124 422 124 HOH HOH . D 4 HOH A 125 423 125 HOH HOH . D 4 HOH A 126 424 126 HOH HOH . D 4 HOH A 127 426 128 HOH HOH . D 4 HOH A 128 427 129 HOH HOH . D 4 HOH A 129 428 130 HOH HOH . D 4 HOH A 130 429 131 HOH HOH . D 4 HOH A 131 430 132 HOH HOH . D 4 HOH A 132 431 133 HOH HOH . D 4 HOH A 133 432 134 HOH HOH . D 4 HOH A 134 433 135 HOH HOH . D 4 HOH A 135 434 136 HOH HOH . D 4 HOH A 136 435 137 HOH HOH . D 4 HOH A 137 436 138 HOH HOH . D 4 HOH A 138 437 139 HOH HOH . D 4 HOH A 139 438 140 HOH HOH . D 4 HOH A 140 439 141 HOH HOH . D 4 HOH A 141 440 142 HOH HOH . D 4 HOH A 142 441 143 HOH HOH . D 4 HOH A 143 443 145 HOH HOH . D 4 HOH A 144 444 146 HOH HOH . D 4 HOH A 145 445 147 HOH HOH . D 4 HOH A 146 446 148 HOH HOH . D 4 HOH A 147 447 149 HOH HOH . D 4 HOH A 148 448 150 HOH HOH . D 4 HOH A 149 449 151 HOH HOH . D 4 HOH A 150 450 152 HOH HOH . D 4 HOH A 151 451 153 HOH HOH . D 4 HOH A 152 452 154 HOH HOH . D 4 HOH A 153 453 155 HOH HOH . D 4 HOH A 154 454 156 HOH HOH . D 4 HOH A 155 455 157 HOH HOH . D 4 HOH A 156 456 158 HOH HOH . D 4 HOH A 157 457 159 HOH HOH . D 4 HOH A 158 458 160 HOH HOH . D 4 HOH A 159 459 161 HOH HOH . D 4 HOH A 160 460 162 HOH HOH . D 4 HOH A 161 462 164 HOH HOH . D 4 HOH A 162 463 165 HOH HOH . D 4 HOH A 163 464 166 HOH HOH . D 4 HOH A 164 465 167 HOH HOH . D 4 HOH A 165 466 168 HOH HOH . D 4 HOH A 166 467 169 HOH HOH . D 4 HOH A 167 468 170 HOH HOH . D 4 HOH A 168 469 171 HOH HOH . D 4 HOH A 169 470 172 HOH HOH . D 4 HOH A 170 472 174 HOH HOH . D 4 HOH A 171 473 175 HOH HOH . D 4 HOH A 172 474 176 HOH HOH . D 4 HOH A 173 476 178 HOH HOH . D 4 HOH A 174 477 179 HOH HOH . D 4 HOH A 175 478 180 HOH HOH . D 4 HOH A 176 479 181 HOH HOH . D 4 HOH A 177 481 183 HOH HOH . D 4 HOH A 178 483 185 HOH HOH . D 4 HOH A 179 484 186 HOH HOH . D 4 HOH A 180 485 187 HOH HOH . D 4 HOH A 181 486 188 HOH HOH . D 4 HOH A 182 487 189 HOH HOH . D 4 HOH A 183 490 192 HOH HOH . D 4 HOH A 184 492 194 HOH HOH . D 4 HOH A 185 493 195 HOH HOH . D 4 HOH A 186 494 196 HOH HOH . D 4 HOH A 187 495 197 HOH HOH . D 4 HOH A 188 496 198 HOH HOH . D 4 HOH A 189 497 199 HOH HOH . D 4 HOH A 190 498 200 HOH HOH . D 4 HOH A 191 499 201 HOH HOH . D 4 HOH A 192 500 202 HOH HOH . D 4 HOH A 193 504 206 HOH HOH . D 4 HOH A 194 510 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X72 . . . C 3 -64.562 -10.325 24.119 1 18.15 ? N01 X72 512 A 1 HETATM 2 N N02 X72 . . . C 3 -67.14 -9.803 20.989 1 15.79 ? N02 X72 512 A 1 HETATM 3 N N03 X72 . . . C 3 -62.242 -11.659 28.131 1 26.73 ? N03 X72 512 A 1 HETATM 4 N N04 X72 . . . C 3 -62.985 -13.346 26.575 1 24.54 ? N04 X72 512 A 1 HETATM 5 N N05 X72 . . . C 3 -69.691 -8.593 25.123 1 22.15 ? N05 X72 512 A 1 HETATM 6 C C06 X72 . . . C 3 -68.097 -9.437 23.612 1 19.1 ? C06 X72 512 A 1 HETATM 7 C C07 X72 . . . C 3 -66.767 -9.901 23.324 1 19.21 ? C07 X72 512 A 1 HETATM 8 C C08 X72 . . . C 3 -65.782 -9.919 24.366 1 17.55 ? C08 X72 512 A 1 HETATM 9 C C09 X72 . . . C 3 -66.158 -9.495 25.678 1 20.72 ? C09 X72 512 A 1 HETATM 10 C C10 X72 . . . C 3 -67.47 -9.051 25.962 1 21.52 ? C10 X72 512 A 1 HETATM 11 C C11 X72 . . . C 3 -68.471 -9.003 24.918 1 21.4 ? C11 X72 512 A 1 HETATM 12 C C12 X72 . . . C 3 -66.478 -10.326 22.048 1 17.46 ? C12 X72 512 A 1 HETATM 13 C C13 X72 . . . C 3 -63.384 -9.919 24.925 1 21.2 ? C13 X72 512 A 1 HETATM 14 C C14 X72 . . . C 3 -63.061 -10.994 25.932 1 23.23 ? C14 X72 512 A 1 HETATM 15 C C15 X72 . . . C 3 -62.54 -10.706 27.194 1 26.23 ? C15 X72 512 A 1 HETATM 16 C C16 X72 . . . C 3 -62.481 -12.948 27.773 1 25.42 ? C16 X72 512 A 1 HETATM 17 C C17 X72 . . . C 3 -63.262 -12.357 25.68 1 22.47 ? C17 X72 512 A 1 HETATM 18 O O18 X72 . . . C 3 -65.668 -11.223 21.861 1 17.13 ? O18 X72 512 A 1 HETATM 19 O O19 X72 . . . C 3 -69.997 -7.835 26.145 1 28.67 ? O19 X72 512 A 1 HETATM 20 O O20 X72 . . . C 3 -70.66 -8.89 24.278 1 23.96 ? O20 X72 512 A 1 HETATM 21 CL CL21 X72 . . . C 3 -67.801 -8.594 27.581 1 23.69 ? CL21 X72 512 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #