data_3QZV # _model_server_result.job_id HDrk9-X2INBtkNzByEyS5w _model_server_result.datetime_utc '2025-01-11 13:00:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":176}' # _entry.id 3QZV # _exptl.entry_id 3QZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.2 _cell.angle_gamma 90 _cell.entry_id 3QZV _cell.length_a 65.525 _cell.length_b 38.513 _cell.length_c 87.752 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 5 C GLY 11 1_555 B N ALY 6 C ALY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 C ZN ZN . A ZN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A SG CYS 13 A CYS 13 1_555 C ZN ZN . A ZN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 A SG CYS 26 A CYS 26 1_555 D ZN ZN . A ZN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 A SG CYS 29 A CYS 29 1_555 D ZN ZN . A ZN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 A ND1 HIS 34 A HIS 34 1_555 C ZN ZN . A ZN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 A SG CYS 37 A CYS 37 1_555 C ZN ZN . A ZN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc7 A SG CYS 53 A CYS 53 1_555 D ZN ZN . A ZN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc8 A SG CYS 56 A CYS 56 1_555 D ZN ZN . A ZN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QZV _atom_sites.fract_transf_matrix[1][1] 0.015261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 175 175 ZN ZN . D 3 ZN A 1 176 176 ZN ZN . E 4 HOH A 1 177 177 HOH HOH . E 4 HOH A 2 178 178 HOH HOH . E 4 HOH A 3 179 179 HOH HOH . E 4 HOH A 4 180 180 HOH HOH . E 4 HOH A 5 181 181 HOH HOH . E 4 HOH A 6 182 182 HOH HOH . E 4 HOH A 7 183 183 HOH HOH . E 4 HOH A 8 184 184 HOH HOH . E 4 HOH A 9 185 185 HOH HOH . E 4 HOH A 10 186 186 HOH HOH . E 4 HOH A 11 187 187 HOH HOH . E 4 HOH A 12 188 188 HOH HOH . E 4 HOH A 13 189 189 HOH HOH . E 4 HOH A 14 190 190 HOH HOH . E 4 HOH A 15 191 191 HOH HOH . E 4 HOH A 16 192 192 HOH HOH . E 4 HOH A 17 193 193 HOH HOH . E 4 HOH A 18 194 194 HOH HOH . E 4 HOH A 19 195 195 HOH HOH . E 4 HOH A 20 196 196 HOH HOH . E 4 HOH A 21 197 197 HOH HOH . E 4 HOH A 22 198 198 HOH HOH . E 4 HOH A 23 199 199 HOH HOH . E 4 HOH A 24 200 200 HOH HOH . E 4 HOH A 25 201 201 HOH HOH . E 4 HOH A 26 202 202 HOH HOH . E 4 HOH A 27 203 203 HOH HOH . E 4 HOH A 28 204 204 HOH HOH . E 4 HOH A 29 205 205 HOH HOH . E 4 HOH A 30 206 206 HOH HOH . E 4 HOH A 31 207 207 HOH HOH . E 4 HOH A 32 208 208 HOH HOH . E 4 HOH A 33 209 209 HOH HOH . E 4 HOH A 34 210 210 HOH HOH . E 4 HOH A 35 211 211 HOH HOH . E 4 HOH A 36 212 212 HOH HOH . E 4 HOH A 37 213 213 HOH HOH . E 4 HOH A 38 214 214 HOH HOH . E 4 HOH A 39 215 215 HOH HOH . E 4 HOH A 40 216 216 HOH HOH . E 4 HOH A 41 217 217 HOH HOH . E 4 HOH A 42 218 218 HOH HOH . E 4 HOH A 43 219 219 HOH HOH . E 4 HOH A 44 220 220 HOH HOH . E 4 HOH A 45 221 221 HOH HOH . E 4 HOH A 46 222 222 HOH HOH . E 4 HOH A 47 223 223 HOH HOH . E 4 HOH A 48 224 224 HOH HOH . E 4 HOH A 49 225 225 HOH HOH . E 4 HOH A 50 226 226 HOH HOH . E 4 HOH A 51 227 227 HOH HOH . E 4 HOH A 52 228 228 HOH HOH . E 4 HOH A 53 229 229 HOH HOH . E 4 HOH A 54 230 230 HOH HOH . E 4 HOH A 55 231 231 HOH HOH . E 4 HOH A 56 232 232 HOH HOH . E 4 HOH A 57 233 233 HOH HOH . E 4 HOH A 58 234 234 HOH HOH . E 4 HOH A 59 235 235 HOH HOH . E 4 HOH A 60 236 236 HOH HOH . E 4 HOH A 61 237 237 HOH HOH . E 4 HOH A 62 238 238 HOH HOH . E 4 HOH A 63 239 239 HOH HOH . E 4 HOH A 64 240 240 HOH HOH . E 4 HOH A 65 241 241 HOH HOH . E 4 HOH A 66 242 242 HOH HOH . E 4 HOH A 67 243 243 HOH HOH . E 4 HOH A 68 244 244 HOH HOH . E 4 HOH A 69 245 245 HOH HOH . E 4 HOH A 70 246 246 HOH HOH . E 4 HOH A 71 247 247 HOH HOH . E 4 HOH A 72 248 248 HOH HOH . E 4 HOH A 73 249 249 HOH HOH . E 4 HOH A 74 250 250 HOH HOH . E 4 HOH A 75 251 251 HOH HOH . E 4 HOH A 76 252 252 HOH HOH . E 4 HOH A 77 253 253 HOH HOH . E 4 HOH A 78 254 254 HOH HOH . E 4 HOH A 79 255 255 HOH HOH . E 4 HOH A 80 256 256 HOH HOH . E 4 HOH A 81 257 257 HOH HOH . E 4 HOH A 82 258 258 HOH HOH . E 4 HOH A 83 259 259 HOH HOH . E 4 HOH A 84 260 260 HOH HOH . E 4 HOH A 85 261 261 HOH HOH . E 4 HOH A 86 262 262 HOH HOH . E 4 HOH A 87 263 263 HOH HOH . E 4 HOH A 88 264 264 HOH HOH . E 4 HOH A 89 265 265 HOH HOH . E 4 HOH A 90 266 266 HOH HOH . E 4 HOH A 91 267 267 HOH HOH . E 4 HOH A 92 268 268 HOH HOH . E 4 HOH A 93 269 269 HOH HOH . E 4 HOH A 94 270 270 HOH HOH . E 4 HOH A 95 271 271 HOH HOH . E 4 HOH A 96 272 272 HOH HOH . E 4 HOH A 97 273 273 HOH HOH . E 4 HOH A 98 274 274 HOH HOH . E 4 HOH A 99 275 275 HOH HOH . E 4 HOH A 100 276 276 HOH HOH . E 4 HOH A 101 277 277 HOH HOH . E 4 HOH A 102 278 278 HOH HOH . E 4 HOH A 103 279 279 HOH HOH . E 4 HOH A 104 280 280 HOH HOH . E 4 HOH A 105 281 281 HOH HOH . E 4 HOH A 106 282 282 HOH HOH . E 4 HOH A 107 283 283 HOH HOH . E 4 HOH A 108 284 284 HOH HOH . E 4 HOH A 109 285 285 HOH HOH . E 4 HOH A 110 286 286 HOH HOH . E 4 HOH A 111 287 287 HOH HOH . E 4 HOH A 112 288 288 HOH HOH . E 4 HOH A 113 289 289 HOH HOH . E 4 HOH A 114 290 290 HOH HOH . E 4 HOH A 115 291 291 HOH HOH . E 4 HOH A 116 292 292 HOH HOH . E 4 HOH A 117 293 293 HOH HOH . E 4 HOH A 118 294 294 HOH HOH . E 4 HOH A 119 295 295 HOH HOH . E 4 HOH A 120 296 296 HOH HOH . E 4 HOH A 121 297 297 HOH HOH . E 4 HOH A 122 298 298 HOH HOH . E 4 HOH A 123 299 299 HOH HOH . E 4 HOH A 124 300 300 HOH HOH . E 4 HOH A 125 301 301 HOH HOH . E 4 HOH A 126 302 302 HOH HOH . E 4 HOH A 127 303 303 HOH HOH . E 4 HOH A 128 304 304 HOH HOH . E 4 HOH A 129 305 305 HOH HOH . E 4 HOH A 130 306 306 HOH HOH . E 4 HOH A 131 307 307 HOH HOH . E 4 HOH A 132 308 308 HOH HOH . E 4 HOH A 133 309 309 HOH HOH . E 4 HOH A 134 310 310 HOH HOH . F 4 HOH C 1 20 20 HOH HOH . F 4 HOH C 2 21 21 HOH HOH . F 4 HOH C 3 22 22 HOH HOH . F 4 HOH C 4 23 23 HOH HOH . F 4 HOH C 5 24 24 HOH HOH . F 4 HOH C 6 25 25 HOH HOH . F 4 HOH C 7 26 26 HOH HOH . F 4 HOH C 8 27 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.859 _atom_site.Cartn_y -14.137 _atom_site.Cartn_z -32.204 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 176 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #