data_3QZZ # _model_server_result.job_id SDA-bEZgKDfzKQ88Je4-ag _model_server_result.datetime_utc '2024-11-01 06:34:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 3QZZ # _exptl.entry_id 3QZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.1 _cell.angle_gamma 90 _cell.entry_id 3QZZ _cell.length_a 81.296 _cell.length_b 48.73 _cell.length_c 50.925 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 C O HOH . A HOH 196 1_555 B FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3QZZ _atom_sites.fract_transf_matrix[1][1] 0.012301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002413 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 200 200 HEM HEM . C 3 HOH A 1 196 1 HOH HOH . C 3 HOH A 2 197 2 HOH HOH . C 3 HOH A 3 198 3 HOH HOH . C 3 HOH A 4 199 4 HOH HOH . C 3 HOH A 5 201 5 HOH HOH . C 3 HOH A 6 202 6 HOH HOH . C 3 HOH A 7 203 7 HOH HOH . C 3 HOH A 8 204 8 HOH HOH . C 3 HOH A 9 205 9 HOH HOH . C 3 HOH A 10 206 10 HOH HOH . C 3 HOH A 11 207 11 HOH HOH . C 3 HOH A 12 208 12 HOH HOH . C 3 HOH A 13 209 13 HOH HOH . C 3 HOH A 14 210 14 HOH HOH . C 3 HOH A 15 211 15 HOH HOH . C 3 HOH A 16 212 16 HOH HOH . C 3 HOH A 17 213 17 HOH HOH . C 3 HOH A 18 214 18 HOH HOH . C 3 HOH A 19 215 19 HOH HOH . C 3 HOH A 20 216 20 HOH HOH . C 3 HOH A 21 217 21 HOH HOH . C 3 HOH A 22 218 22 HOH HOH . C 3 HOH A 23 219 23 HOH HOH . C 3 HOH A 24 220 24 HOH HOH . C 3 HOH A 25 221 25 HOH HOH . C 3 HOH A 26 222 26 HOH HOH . C 3 HOH A 27 223 27 HOH HOH . C 3 HOH A 28 224 28 HOH HOH . C 3 HOH A 29 225 29 HOH HOH . C 3 HOH A 30 226 30 HOH HOH . C 3 HOH A 31 227 31 HOH HOH . C 3 HOH A 32 228 32 HOH HOH . C 3 HOH A 33 229 33 HOH HOH . C 3 HOH A 34 230 34 HOH HOH . C 3 HOH A 35 231 35 HOH HOH . C 3 HOH A 36 232 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -11.914 3.912 -10.893 1 20.15 ? CHA HEM 200 A 1 HETATM 2 C CHB HEM . . . B 2 -8.564 0.607 -9.794 1 14.45 ? CHB HEM 200 A 1 HETATM 3 C CHC HEM . . . B 2 -9.148 2.197 -5.247 1 8.44 ? CHC HEM 200 A 1 HETATM 4 C CHD HEM . . . B 2 -13.49 4.004 -6.265 1 19.44 ? CHD HEM 200 A 1 HETATM 5 C C1A HEM . . . B 2 -10.924 2.975 -11.005 1 11.37 ? C1A HEM 200 A 1 HETATM 6 C C2A HEM . . . B 2 -10.326 2.518 -12.238 1 20.48 ? C2A HEM 200 A 1 HETATM 7 C C3A HEM . . . B 2 -9.398 1.599 -11.961 1 20.43 ? C3A HEM 200 A 1 HETATM 8 C C4A HEM . . . B 2 -9.378 1.438 -10.527 1 12.04 ? C4A HEM 200 A 1 HETATM 9 C CMA HEM . . . B 2 -8.52 0.854 -12.985 1 20.02 ? CMA HEM 200 A 1 HETATM 10 C CAA HEM . . . B 2 -10.701 3.019 -13.627 1 13.86 ? CAA HEM 200 A 1 HETATM 11 C CBA HEM . . . B 2 -9.775 4.19 -13.908 1 21.68 ? CBA HEM 200 A 1 HETATM 12 C CGA HEM . . . B 2 -9.83 4.425 -15.399 1 26.82 ? CGA HEM 200 A 1 HETATM 13 O O1A HEM . . . B 2 -9.72 3.418 -16.139 1 27.13 ? O1A HEM 200 A 1 HETATM 14 O O2A HEM . . . B 2 -9.992 5.595 -15.848 1 31.77 ? O2A HEM 200 A 1 HETATM 15 C C1B HEM . . . B 2 -8.391 0.778 -8.433 1 15.41 ? C1B HEM 200 A 1 HETATM 16 C C2B HEM . . . B 2 -7.412 0.123 -7.569 1 16.1 ? C2B HEM 200 A 1 HETATM 17 C C3B HEM . . . B 2 -7.585 0.57 -6.321 1 14.84 ? C3B HEM 200 A 1 HETATM 18 C C4B HEM . . . B 2 -8.672 1.524 -6.351 1 16.43 ? C4B HEM 200 A 1 HETATM 19 C CMB HEM . . . B 2 -6.343 -0.897 -7.994 1 15.54 ? CMB HEM 200 A 1 HETATM 20 C CAB HEM . . . B 2 -6.774 0.175 -5.067 1 18.42 ? CAB HEM 200 A 1 HETATM 21 C CBB HEM . . . B 2 -5.645 -0.548 -5.164 1 15.2 ? CBB HEM 200 A 1 HETATM 22 C C1C HEM . . . B 2 -10.408 2.716 -5.096 1 2.76 ? C1C HEM 200 A 1 HETATM 23 C C2C HEM . . . B 2 -11.077 2.978 -3.834 1 10.76 ? C2C HEM 200 A 1 HETATM 24 C C3C HEM . . . B 2 -12.289 3.486 -4.08 1 13.56 ? C3C HEM 200 A 1 HETATM 25 C C4C HEM . . . B 2 -12.418 3.554 -5.525 1 14.52 ? C4C HEM 200 A 1 HETATM 26 C CMC HEM . . . B 2 -10.436 2.707 -2.473 1 4.51 ? CMC HEM 200 A 1 HETATM 27 C CAC HEM . . . B 2 -13.343 3.914 -3.041 1 15.72 ? CAC HEM 200 A 1 HETATM 28 C CBC HEM . . . B 2 -14.611 3.503 -3.173 1 21.39 ? CBC HEM 200 A 1 HETATM 29 C C1D HEM . . . B 2 -13.35 4.36 -7.59 1 21.76 ? C1D HEM 200 A 1 HETATM 30 C C2D HEM . . . B 2 -13.994 5.481 -8.252 1 24.71 ? C2D HEM 200 A 1 HETATM 31 C C3D HEM . . . B 2 -13.486 5.441 -9.701 1 26.24 ? C3D HEM 200 A 1 HETATM 32 C C4D HEM . . . B 2 -12.591 4.303 -9.759 1 25.42 ? C4D HEM 200 A 1 HETATM 33 C CMD HEM . . . B 2 -14.984 6.495 -7.641 1 26.08 ? CMD HEM 200 A 1 HETATM 34 C CAD HEM . . . B 2 -13.84 6.405 -10.856 1 31.88 ? CAD HEM 200 A 1 HETATM 35 C CBD HEM . . . B 2 -12.988 7.668 -10.746 1 32.83 ? CBD HEM 200 A 1 HETATM 36 C CGD HEM . . . B 2 -13.45 8.698 -11.75 1 37.35 ? CGD HEM 200 A 1 HETATM 37 O O1D HEM . . . B 2 -14.228 9.606 -11.355 1 32.26 ? O1D HEM 200 A 1 HETATM 38 O O2D HEM . . . B 2 -13.044 8.612 -12.952 1 40.64 ? O2D HEM 200 A 1 HETATM 39 N NA HEM . . . B 2 -10.32 2.301 -9.998 1 10.92 ? NA HEM 200 A 1 HETATM 40 N NB HEM . . . B 2 -9.145 1.64 -7.657 1 7.03 ? NB HEM 200 A 1 HETATM 41 N NC HEM . . . B 2 -11.249 3.073 -6.09 1 6.86 ? NC HEM 200 A 1 HETATM 42 N ND HEM . . . B 2 -12.525 3.696 -8.5 1 17.14 ? ND HEM 200 A 1 HETATM 43 FE FE HEM . . . B 2 -10.777 2.782 -8.08 1 16.86 ? FE HEM 200 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #