data_3R04 # _model_server_result.job_id GbRDkZAkFK5i0c_EOqbBvw _model_server_result.datetime_utc '2025-01-10 11:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":555}' # _entry.id 3R04 # _exptl.entry_id 3R04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-{6-[(trans-4-aminocyclohexyl)amino]pyrazin-2-yl}-1-benzofuran-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R04 _cell.length_a 97.941 _cell.length_b 97.941 _cell.length_c 80.629 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H20 N4 O3' _chem_comp.formula_weight 352.387 _chem_comp.id UNQ _chem_comp.mon_nstd_flag . _chem_comp.name '5-{6-[(trans-4-aminocyclohexyl)amino]pyrazin-2-yl}-1-benzofuran-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C01 UNQ doub 368 n y C01 C03 UNQ sing 369 n y C01 C13 UNQ sing 370 n y C04 C02 UNQ sing 371 n y C02 C08 UNQ sing 372 n y C02 C03 UNQ doub 373 n y C03 H03 UNQ sing 374 n n O07 C04 UNQ sing 375 n y C06 C04 UNQ doub 376 n y C06 C05 UNQ sing 377 n y C05 H05 UNQ sing 378 n n C06 H06 UNQ sing 379 n n O07 C09 UNQ sing 380 n y C09 C08 UNQ doub 381 n y C08 H08 UNQ sing 382 n n C10 C09 UNQ sing 383 n n O12 C10 UNQ doub 384 n n C10 O11 UNQ sing 385 n n O11 HO11 UNQ sing 386 n n C17 C13 UNQ doub 387 n y C13 N15 UNQ sing 388 n y N15 C14 UNQ doub 389 n y C16 C14 UNQ sing 390 n y C14 N19 UNQ sing 391 n n N18 C16 UNQ doub 392 n y C16 H16 UNQ sing 393 n n C17 N18 UNQ sing 394 n y C17 H17 UNQ sing 395 n n N19 C20 UNQ sing 396 n n N19 HN19 UNQ sing 397 n n C25 C20 UNQ sing 398 n n C20 C21 UNQ sing 399 n n C20 H20 UNQ sing 400 n n C21 C22 UNQ sing 401 n n C21 H21 UNQ sing 402 n n C21 H21A UNQ sing 403 n n C23 C22 UNQ sing 404 n n C22 H22 UNQ sing 405 n n C22 H22A UNQ sing 406 n n C24 C23 UNQ sing 407 n n C23 N26 UNQ sing 408 n n C23 H23 UNQ sing 409 n n C25 C24 UNQ sing 410 n n C24 H24 UNQ sing 411 n n C24 H24A UNQ sing 412 n n C25 H25 UNQ sing 413 n n C25 H25A UNQ sing 414 n n N26 HN26 UNQ sing 415 n n N26 HN2A UNQ sing 416 n n # _atom_sites.entry_id 3R04 _atom_sites.fract_transf_matrix[1][1] 0.01021 _atom_sites.fract_transf_matrix[1][2] 0.005895 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNQ A 1 555 555 UNQ UNQ . C 3 IMD A 1 4496 4496 IMD IMD . D 3 IMD A 1 4497 4497 IMD IMD . E 3 IMD A 1 4498 4498 IMD IMD . F 4 HOH A 1 1 1 HOH HOH . F 4 HOH A 2 2 2 HOH HOH . F 4 HOH A 3 3 3 HOH HOH . F 4 HOH A 4 4 4 HOH HOH . F 4 HOH A 5 5 5 HOH HOH . F 4 HOH A 6 6 6 HOH HOH . F 4 HOH A 7 7 7 HOH HOH . F 4 HOH A 8 8 8 HOH HOH . F 4 HOH A 9 9 9 HOH HOH . F 4 HOH A 10 10 10 HOH HOH . F 4 HOH A 11 11 11 HOH HOH . F 4 HOH A 12 12 12 HOH HOH . F 4 HOH A 13 13 13 HOH HOH . F 4 HOH A 14 14 14 HOH HOH . F 4 HOH A 15 15 15 HOH HOH . F 4 HOH A 16 16 16 HOH HOH . F 4 HOH A 17 17 17 HOH HOH . F 4 HOH A 18 18 18 HOH HOH . F 4 HOH A 19 19 19 HOH HOH . F 4 HOH A 20 20 20 HOH HOH . F 4 HOH A 21 21 21 HOH HOH . F 4 HOH A 22 22 22 HOH HOH . F 4 HOH A 23 23 23 HOH HOH . F 4 HOH A 24 24 24 HOH HOH . F 4 HOH A 25 25 25 HOH HOH . F 4 HOH A 26 26 26 HOH HOH . F 4 HOH A 27 27 27 HOH HOH . F 4 HOH A 28 327 28 HOH HOH . F 4 HOH A 29 328 29 HOH HOH . F 4 HOH A 30 329 30 HOH HOH . F 4 HOH A 31 330 31 HOH HOH . F 4 HOH A 32 331 32 HOH HOH . F 4 HOH A 33 332 33 HOH HOH . F 4 HOH A 34 333 34 HOH HOH . F 4 HOH A 35 334 35 HOH HOH . F 4 HOH A 36 335 36 HOH HOH . F 4 HOH A 37 336 37 HOH HOH . F 4 HOH A 38 337 38 HOH HOH . F 4 HOH A 39 338 39 HOH HOH . F 4 HOH A 40 339 40 HOH HOH . F 4 HOH A 41 340 41 HOH HOH . F 4 HOH A 42 341 42 HOH HOH . F 4 HOH A 43 342 43 HOH HOH . F 4 HOH A 44 343 44 HOH HOH . F 4 HOH A 45 344 45 HOH HOH . F 4 HOH A 46 345 46 HOH HOH . F 4 HOH A 47 346 47 HOH HOH . F 4 HOH A 48 347 48 HOH HOH . F 4 HOH A 49 348 49 HOH HOH . F 4 HOH A 50 349 50 HOH HOH . F 4 HOH A 51 350 51 HOH HOH . F 4 HOH A 52 351 52 HOH HOH . F 4 HOH A 53 352 53 HOH HOH . F 4 HOH A 54 353 54 HOH HOH . F 4 HOH A 55 354 55 HOH HOH . F 4 HOH A 56 355 56 HOH HOH . F 4 HOH A 57 356 57 HOH HOH . F 4 HOH A 58 357 58 HOH HOH . F 4 HOH A 59 358 59 HOH HOH . F 4 HOH A 60 359 60 HOH HOH . F 4 HOH A 61 360 61 HOH HOH . F 4 HOH A 62 361 62 HOH HOH . F 4 HOH A 63 362 63 HOH HOH . F 4 HOH A 64 363 64 HOH HOH . F 4 HOH A 65 364 65 HOH HOH . F 4 HOH A 66 365 66 HOH HOH . F 4 HOH A 67 366 67 HOH HOH . F 4 HOH A 68 367 68 HOH HOH . F 4 HOH A 69 368 69 HOH HOH . F 4 HOH A 70 369 70 HOH HOH . F 4 HOH A 71 370 71 HOH HOH . F 4 HOH A 72 371 72 HOH HOH . F 4 HOH A 73 372 73 HOH HOH . F 4 HOH A 74 373 74 HOH HOH . F 4 HOH A 75 374 75 HOH HOH . F 4 HOH A 76 375 76 HOH HOH . F 4 HOH A 77 376 77 HOH HOH . F 4 HOH A 78 377 78 HOH HOH . F 4 HOH A 79 378 79 HOH HOH . F 4 HOH A 80 379 80 HOH HOH . F 4 HOH A 81 380 81 HOH HOH . F 4 HOH A 82 381 82 HOH HOH . F 4 HOH A 83 382 83 HOH HOH . F 4 HOH A 84 383 84 HOH HOH . F 4 HOH A 85 384 85 HOH HOH . F 4 HOH A 86 385 86 HOH HOH . F 4 HOH A 87 386 87 HOH HOH . F 4 HOH A 88 387 88 HOH HOH . F 4 HOH A 89 388 89 HOH HOH . F 4 HOH A 90 389 90 HOH HOH . F 4 HOH A 91 390 91 HOH HOH . F 4 HOH A 92 391 92 HOH HOH . F 4 HOH A 93 392 93 HOH HOH . F 4 HOH A 94 393 94 HOH HOH . F 4 HOH A 95 394 95 HOH HOH . F 4 HOH A 96 395 96 HOH HOH . F 4 HOH A 97 396 97 HOH HOH . F 4 HOH A 98 397 98 HOH HOH . F 4 HOH A 99 398 99 HOH HOH . F 4 HOH A 100 399 100 HOH HOH . F 4 HOH A 101 400 101 HOH HOH . F 4 HOH A 102 401 102 HOH HOH . F 4 HOH A 103 402 103 HOH HOH . F 4 HOH A 104 403 104 HOH HOH . F 4 HOH A 105 404 105 HOH HOH . F 4 HOH A 106 405 106 HOH HOH . F 4 HOH A 107 406 107 HOH HOH . F 4 HOH A 108 407 108 HOH HOH . F 4 HOH A 109 408 109 HOH HOH . F 4 HOH A 110 409 110 HOH HOH . F 4 HOH A 111 410 111 HOH HOH . F 4 HOH A 112 411 112 HOH HOH . F 4 HOH A 113 412 113 HOH HOH . F 4 HOH A 114 413 114 HOH HOH . F 4 HOH A 115 414 115 HOH HOH . F 4 HOH A 116 415 116 HOH HOH . F 4 HOH A 117 416 118 HOH HOH . F 4 HOH A 118 417 119 HOH HOH . F 4 HOH A 119 418 120 HOH HOH . F 4 HOH A 120 419 121 HOH HOH . F 4 HOH A 121 420 122 HOH HOH . F 4 HOH A 122 421 123 HOH HOH . F 4 HOH A 123 422 124 HOH HOH . F 4 HOH A 124 423 125 HOH HOH . F 4 HOH A 125 424 126 HOH HOH . F 4 HOH A 126 425 127 HOH HOH . F 4 HOH A 127 426 128 HOH HOH . F 4 HOH A 128 427 129 HOH HOH . F 4 HOH A 129 428 130 HOH HOH . F 4 HOH A 130 429 131 HOH HOH . F 4 HOH A 131 430 132 HOH HOH . F 4 HOH A 132 431 133 HOH HOH . F 4 HOH A 133 432 134 HOH HOH . F 4 HOH A 134 433 135 HOH HOH . F 4 HOH A 135 434 136 HOH HOH . F 4 HOH A 136 435 137 HOH HOH . F 4 HOH A 137 436 138 HOH HOH . F 4 HOH A 138 437 139 HOH HOH . F 4 HOH A 139 438 140 HOH HOH . F 4 HOH A 140 439 141 HOH HOH . F 4 HOH A 141 440 142 HOH HOH . F 4 HOH A 142 441 143 HOH HOH . F 4 HOH A 143 442 144 HOH HOH . F 4 HOH A 144 443 145 HOH HOH . F 4 HOH A 145 444 146 HOH HOH . F 4 HOH A 146 445 147 HOH HOH . F 4 HOH A 147 446 148 HOH HOH . F 4 HOH A 148 447 149 HOH HOH . F 4 HOH A 149 448 150 HOH HOH . F 4 HOH A 150 449 151 HOH HOH . F 4 HOH A 151 450 152 HOH HOH . F 4 HOH A 152 451 153 HOH HOH . F 4 HOH A 153 452 154 HOH HOH . F 4 HOH A 154 453 155 HOH HOH . F 4 HOH A 155 454 156 HOH HOH . F 4 HOH A 156 455 157 HOH HOH . F 4 HOH A 157 456 158 HOH HOH . F 4 HOH A 158 457 159 HOH HOH . F 4 HOH A 159 458 160 HOH HOH . F 4 HOH A 160 459 161 HOH HOH . F 4 HOH A 161 460 162 HOH HOH . F 4 HOH A 162 461 163 HOH HOH . F 4 HOH A 163 462 164 HOH HOH . F 4 HOH A 164 463 166 HOH HOH . F 4 HOH A 165 464 167 HOH HOH . F 4 HOH A 166 465 168 HOH HOH . F 4 HOH A 167 466 170 HOH HOH . F 4 HOH A 168 467 171 HOH HOH . F 4 HOH A 169 468 172 HOH HOH . F 4 HOH A 170 469 173 HOH HOH . F 4 HOH A 171 470 174 HOH HOH . F 4 HOH A 172 471 175 HOH HOH . F 4 HOH A 173 472 176 HOH HOH . F 4 HOH A 174 473 177 HOH HOH . F 4 HOH A 175 474 178 HOH HOH . F 4 HOH A 176 475 180 HOH HOH . F 4 HOH A 177 476 181 HOH HOH . F 4 HOH A 178 477 182 HOH HOH . F 4 HOH A 179 478 183 HOH HOH . F 4 HOH A 180 479 184 HOH HOH . F 4 HOH A 181 480 185 HOH HOH . F 4 HOH A 182 481 186 HOH HOH . F 4 HOH A 183 482 187 HOH HOH . F 4 HOH A 184 483 188 HOH HOH . F 4 HOH A 185 484 189 HOH HOH . F 4 HOH A 186 485 190 HOH HOH . F 4 HOH A 187 486 191 HOH HOH . F 4 HOH A 188 487 192 HOH HOH . F 4 HOH A 189 488 193 HOH HOH . F 4 HOH A 190 489 194 HOH HOH . F 4 HOH A 191 490 195 HOH HOH . F 4 HOH A 192 491 196 HOH HOH . F 4 HOH A 193 492 197 HOH HOH . F 4 HOH A 194 493 198 HOH HOH . F 4 HOH A 195 494 199 HOH HOH . F 4 HOH A 196 495 200 HOH HOH . F 4 HOH A 197 496 201 HOH HOH . F 4 HOH A 198 497 202 HOH HOH . F 4 HOH A 199 498 203 HOH HOH . F 4 HOH A 200 499 204 HOH HOH . F 4 HOH A 201 500 205 HOH HOH . F 4 HOH A 202 501 206 HOH HOH . F 4 HOH A 203 502 207 HOH HOH . F 4 HOH A 204 503 208 HOH HOH . F 4 HOH A 205 504 210 HOH HOH . F 4 HOH A 206 505 211 HOH HOH . F 4 HOH A 207 506 212 HOH HOH . F 4 HOH A 208 507 213 HOH HOH . F 4 HOH A 209 508 214 HOH HOH . F 4 HOH A 210 509 215 HOH HOH . F 4 HOH A 211 510 216 HOH HOH . F 4 HOH A 212 511 217 HOH HOH . F 4 HOH A 213 512 218 HOH HOH . F 4 HOH A 214 513 220 HOH HOH . F 4 HOH A 215 514 221 HOH HOH . F 4 HOH A 216 515 222 HOH HOH . F 4 HOH A 217 516 223 HOH HOH . F 4 HOH A 218 517 224 HOH HOH . F 4 HOH A 219 518 225 HOH HOH . F 4 HOH A 220 519 226 HOH HOH . F 4 HOH A 221 520 227 HOH HOH . F 4 HOH A 222 521 229 HOH HOH . F 4 HOH A 223 522 231 HOH HOH . F 4 HOH A 224 523 232 HOH HOH . F 4 HOH A 225 524 233 HOH HOH . F 4 HOH A 226 525 234 HOH HOH . F 4 HOH A 227 526 235 HOH HOH . F 4 HOH A 228 527 236 HOH HOH . F 4 HOH A 229 528 237 HOH HOH . F 4 HOH A 230 529 238 HOH HOH . F 4 HOH A 231 530 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 UNQ . . . B 2 23.301 -37.315 -0.507 1 20.13 ? C01 UNQ 555 A 1 HETATM 2 C C02 UNQ . . . B 2 22.795 -35.08 -1.066 1 18.25 ? C02 UNQ 555 A 1 HETATM 3 C C03 UNQ . . . B 2 22.8 -36.059 -0.113 1 19.93 ? C03 UNQ 555 A 1 HETATM 4 C C04 UNQ . . . B 2 23.257 -35.31 -2.379 1 18.77 ? C04 UNQ 555 A 1 HETATM 5 C C05 UNQ . . . B 2 23.747 -37.534 -1.844 1 20.12 ? C05 UNQ 555 A 1 HETATM 6 C C06 UNQ . . . B 2 23.699 -36.573 -2.845 1 19.8 ? C06 UNQ 555 A 1 HETATM 7 O O07 UNQ . . . B 2 23.103 -34.169 -3.137 1 22.15 ? O07 UNQ 555 A 1 HETATM 8 C C08 UNQ . . . B 2 22.345 -33.673 -0.98 1 17.95 ? C08 UNQ 555 A 1 HETATM 9 C C09 UNQ . . . B 2 22.547 -33.242 -2.252 1 18.49 ? C09 UNQ 555 A 1 HETATM 10 C C10 UNQ . . . B 2 22.352 -31.824 -2.751 1 16.42 ? C10 UNQ 555 A 1 HETATM 11 O O11 UNQ . . . B 2 21.843 -30.921 -2.061 1 20.85 ? O11 UNQ 555 A 1 HETATM 12 O O12 UNQ . . . B 2 23.021 -31.663 -3.886 1 21.63 ? O12 UNQ 555 A 1 HETATM 13 C C13 UNQ . . . B 2 23.416 -38.34 0.561 1 20.15 ? C13 UNQ 555 A 1 HETATM 14 C C14 UNQ . . . B 2 23.614 -39.117 2.801 1 24.29 ? C14 UNQ 555 A 1 HETATM 15 N N15 UNQ . . . B 2 23.442 -38.056 1.91 1 24.37 ? N15 UNQ 555 A 1 HETATM 16 C C16 UNQ . . . B 2 23.77 -40.445 2.333 1 23.56 ? C16 UNQ 555 A 1 HETATM 17 C C17 UNQ . . . B 2 23.645 -39.667 0.14 1 24.98 ? C17 UNQ 555 A 1 HETATM 18 N N18 UNQ . . . B 2 23.79 -40.711 1.014 1 28.72 ? N18 UNQ 555 A 1 HETATM 19 N N19 UNQ . . . B 2 23.603 -38.818 4.171 1 27.7 ? N19 UNQ 555 A 1 HETATM 20 C C20 UNQ . . . B 2 23.197 -37.422 4.577 1 28.02 ? C20 UNQ 555 A 1 HETATM 21 C C21 UNQ . . . B 2 22.715 -37.43 6.066 1 29.38 ? C21 UNQ 555 A 1 HETATM 22 C C22 UNQ . . . B 2 22.465 -35.983 6.592 1 31.13 ? C22 UNQ 555 A 1 HETATM 23 C C23 UNQ . . . B 2 23.69 -35.052 6.389 1 31.22 ? C23 UNQ 555 A 1 HETATM 24 C C24 UNQ . . . B 2 24.111 -35.068 4.904 1 31.09 ? C24 UNQ 555 A 1 HETATM 25 C C25 UNQ . . . B 2 24.453 -36.487 4.447 1 33.63 ? C25 UNQ 555 A 1 HETATM 26 N N26 UNQ . . . B 2 23.543 -33.736 6.935 1 33.66 ? N26 UNQ 555 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #