data_3R07 # _model_server_result.job_id Pzs0LgqRcLx3SEN2Dxjing _model_server_result.datetime_utc '2024-11-29 09:00:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":263}' # _entry.id 3R07 # _exptl.entry_id 3R07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R07 _cell.length_a 118.57 _cell.length_b 118.57 _cell.length_c 72.92 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 230 n n C1 H11 MPD sing 231 n n C1 H12 MPD sing 232 n n C1 H13 MPD sing 233 n n C2 O2 MPD sing 234 n n C2 CM MPD sing 235 n n C2 C3 MPD sing 236 n n O2 HO2 MPD sing 237 n n CM HM1 MPD sing 238 n n CM HM2 MPD sing 239 n n CM HM3 MPD sing 240 n n C3 C4 MPD sing 241 n n C3 H31 MPD sing 242 n n C3 H32 MPD sing 243 n n C4 O4 MPD sing 244 n n C4 C5 MPD sing 245 n n C4 H4 MPD sing 246 n n O4 HO4 MPD sing 247 n n C5 H51 MPD sing 248 n n C5 H52 MPD sing 249 n n C5 H53 MPD sing 250 n n # _atom_sites.entry_id 3R07 _atom_sites.fract_transf_matrix[1][1] 0.008434 _atom_sites.fract_transf_matrix[1][2] 0.004869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD A 1 263 1 MPD MPD . D 3 MPD A 1 264 2 MPD MPD . E 4 ACT A 1 265 1 ACT ACT . F 4 ACT C 1 89 2 ACT ACT . G 5 HOH A 1 266 1 HOH HOH . G 5 HOH A 2 267 3 HOH HOH . G 5 HOH A 3 268 4 HOH HOH . G 5 HOH A 4 269 17 HOH HOH . G 5 HOH A 5 270 18 HOH HOH . G 5 HOH A 6 271 24 HOH HOH . G 5 HOH A 7 272 25 HOH HOH . G 5 HOH A 8 273 26 HOH HOH . G 5 HOH A 9 274 27 HOH HOH . G 5 HOH A 10 275 29 HOH HOH . G 5 HOH A 11 276 30 HOH HOH . G 5 HOH A 12 277 37 HOH HOH . G 5 HOH A 13 301 38 HOH HOH . G 5 HOH A 14 302 43 HOH HOH . G 5 HOH A 15 303 44 HOH HOH . G 5 HOH A 16 304 49 HOH HOH . G 5 HOH A 17 305 51 HOH HOH . G 5 HOH A 18 306 61 HOH HOH . G 5 HOH A 19 307 65 HOH HOH . G 5 HOH A 20 308 71 HOH HOH . G 5 HOH A 21 309 98 HOH HOH . G 5 HOH A 22 310 99 HOH HOH . G 5 HOH A 23 311 106 HOH HOH . G 5 HOH A 24 312 114 HOH HOH . G 5 HOH A 25 313 133 HOH HOH . G 5 HOH A 26 314 156 HOH HOH . G 5 HOH A 27 315 157 HOH HOH . G 5 HOH A 28 316 159 HOH HOH . G 5 HOH A 29 317 164 HOH HOH . G 5 HOH A 30 318 165 HOH HOH . G 5 HOH A 31 319 168 HOH HOH . G 5 HOH A 32 320 170 HOH HOH . G 5 HOH A 33 321 171 HOH HOH . G 5 HOH A 34 322 175 HOH HOH . G 5 HOH A 35 323 182 HOH HOH . G 5 HOH A 36 324 185 HOH HOH . G 5 HOH A 37 325 186 HOH HOH . G 5 HOH A 38 326 187 HOH HOH . G 5 HOH A 39 327 193 HOH HOH . G 5 HOH A 40 328 198 HOH HOH . H 5 HOH C 1 90 6 HOH HOH . H 5 HOH C 2 91 76 HOH HOH . H 5 HOH C 3 110 110 HOH HOH . H 5 HOH C 4 130 130 HOH HOH . H 5 HOH C 5 132 132 HOH HOH . H 5 HOH C 6 194 194 HOH HOH . H 5 HOH C 7 204 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 66.149 41.208 9.174 1 29.77 ? C1 MPD 263 A 1 HETATM 2 C C2 MPD . . . C 3 66.253 41.07 10.71 1 32.35 ? C2 MPD 263 A 1 HETATM 3 O O2 MPD . . . C 3 67.673 41.038 11.064 1 32.42 ? O2 MPD 263 A 1 HETATM 4 C CM MPD . . . C 3 65.563 42.282 11.347 1 27.49 ? CM MPD 263 A 1 HETATM 5 C C3 MPD . . . C 3 65.592 39.768 11.212 1 33.02 ? C3 MPD 263 A 1 HETATM 6 C C4 MPD . . . C 3 66.129 39.222 12.534 1 35.72 ? C4 MPD 263 A 1 HETATM 7 O O4 MPD . . . C 3 66.598 40.273 13.365 1 40.37 ? O4 MPD 263 A 1 HETATM 8 C C5 MPD . . . C 3 65.119 38.407 13.333 1 31.94 ? C5 MPD 263 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #