data_3R09 # _model_server_result.job_id V58g2PuXybeMZ8HQLJ0r4w _model_server_result.datetime_utc '2024-10-20 20:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":206}' # _entry.id 3R09 # _exptl.entry_id 3R09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R09 _cell.length_a 66.299 _cell.length_b 66.299 _cell.length_c 251.29 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 12 A ASP 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ASP 12 A ASP 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C MSE 13 A MSE 13 1_555 A N ASP 14 A ASP 14 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 13 A MSE 13 1_555 A N ASP 14 A ASP 14 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ARG 146 A ARG 146 1_555 A N MSE 147 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 147 A MSE 147 1_555 A N VAL 148 A VAL 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C VAL 148 A VAL 148 1_555 A N MSE 149 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 149 A MSE 149 1_555 A N VAL 150 A VAL 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A OD2 ASP 12 A ASP 12 1_555 B MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A O ASP 14 A ASP 14 1_555 B MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A OD1 ASP 152 A ASP 152 1_555 B MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc4 B MG MG . A MG 206 1_555 D O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 B MG MG . A MG 206 1_555 D O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 B MG MG . A MG 206 1_555 D O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3R09 _atom_sites.fract_transf_matrix[1][1] 0.015083 _atom_sites.fract_transf_matrix[1][2] 0.008708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 206 1 MG MG . C 3 SO4 A 1 207 1 SO4 SO4 . D 4 HOH A 1 208 1 HOH HOH . D 4 HOH A 2 209 2 HOH HOH . D 4 HOH A 3 210 3 HOH HOH . D 4 HOH A 4 211 4 HOH HOH . D 4 HOH A 5 212 5 HOH HOH . D 4 HOH A 6 213 6 HOH HOH . D 4 HOH A 7 214 7 HOH HOH . D 4 HOH A 8 215 8 HOH HOH . D 4 HOH A 9 216 9 HOH HOH . D 4 HOH A 10 217 10 HOH HOH . D 4 HOH A 11 218 11 HOH HOH . D 4 HOH A 12 219 12 HOH HOH . D 4 HOH A 13 220 13 HOH HOH . D 4 HOH A 14 221 14 HOH HOH . D 4 HOH A 15 222 15 HOH HOH . D 4 HOH A 16 223 16 HOH HOH . D 4 HOH A 17 224 17 HOH HOH . D 4 HOH A 18 225 18 HOH HOH . D 4 HOH A 19 226 19 HOH HOH . D 4 HOH A 20 227 20 HOH HOH . D 4 HOH A 21 228 21 HOH HOH . D 4 HOH A 22 229 22 HOH HOH . D 4 HOH A 23 230 23 HOH HOH . D 4 HOH A 24 231 24 HOH HOH . D 4 HOH A 25 232 25 HOH HOH . D 4 HOH A 26 233 26 HOH HOH . D 4 HOH A 27 234 27 HOH HOH . D 4 HOH A 28 235 28 HOH HOH . D 4 HOH A 29 236 29 HOH HOH . D 4 HOH A 30 237 30 HOH HOH . D 4 HOH A 31 238 31 HOH HOH . D 4 HOH A 32 239 32 HOH HOH . D 4 HOH A 33 240 33 HOH HOH . D 4 HOH A 34 241 34 HOH HOH . D 4 HOH A 35 242 35 HOH HOH . D 4 HOH A 36 243 36 HOH HOH . D 4 HOH A 37 244 37 HOH HOH . D 4 HOH A 38 245 38 HOH HOH . D 4 HOH A 39 246 39 HOH HOH . D 4 HOH A 40 247 40 HOH HOH . D 4 HOH A 41 248 41 HOH HOH . D 4 HOH A 42 249 43 HOH HOH . D 4 HOH A 43 250 44 HOH HOH . D 4 HOH A 44 251 45 HOH HOH . D 4 HOH A 45 252 46 HOH HOH . D 4 HOH A 46 253 47 HOH HOH . D 4 HOH A 47 254 48 HOH HOH . D 4 HOH A 48 255 49 HOH HOH . D 4 HOH A 49 256 50 HOH HOH . D 4 HOH A 50 257 51 HOH HOH . D 4 HOH A 51 258 52 HOH HOH . D 4 HOH A 52 259 53 HOH HOH . D 4 HOH A 53 260 54 HOH HOH . D 4 HOH A 54 261 55 HOH HOH . D 4 HOH A 55 262 56 HOH HOH . D 4 HOH A 56 263 57 HOH HOH . D 4 HOH A 57 264 58 HOH HOH . D 4 HOH A 58 265 59 HOH HOH . D 4 HOH A 59 266 60 HOH HOH . D 4 HOH A 60 267 61 HOH HOH . D 4 HOH A 61 268 62 HOH HOH . D 4 HOH A 62 269 63 HOH HOH . D 4 HOH A 63 270 64 HOH HOH . D 4 HOH A 64 271 65 HOH HOH . D 4 HOH A 65 272 66 HOH HOH . D 4 HOH A 66 273 67 HOH HOH . D 4 HOH A 67 274 68 HOH HOH . D 4 HOH A 68 275 69 HOH HOH . D 4 HOH A 69 276 70 HOH HOH . D 4 HOH A 70 277 71 HOH HOH . D 4 HOH A 71 278 72 HOH HOH . D 4 HOH A 72 279 73 HOH HOH . D 4 HOH A 73 280 74 HOH HOH . D 4 HOH A 74 281 75 HOH HOH . D 4 HOH A 75 282 77 HOH HOH . D 4 HOH A 76 283 78 HOH HOH . D 4 HOH A 77 284 79 HOH HOH . D 4 HOH A 78 285 80 HOH HOH . D 4 HOH A 79 286 81 HOH HOH . D 4 HOH A 80 287 82 HOH HOH . D 4 HOH A 81 288 83 HOH HOH . D 4 HOH A 82 289 84 HOH HOH . D 4 HOH A 83 290 85 HOH HOH . D 4 HOH A 84 291 86 HOH HOH . D 4 HOH A 85 292 87 HOH HOH . D 4 HOH A 86 293 88 HOH HOH . D 4 HOH A 87 294 90 HOH HOH . D 4 HOH A 88 295 91 HOH HOH . D 4 HOH A 89 296 92 HOH HOH . D 4 HOH A 90 297 93 HOH HOH . D 4 HOH A 91 298 94 HOH HOH . D 4 HOH A 92 299 95 HOH HOH . D 4 HOH A 93 300 96 HOH HOH . D 4 HOH A 94 301 97 HOH HOH . D 4 HOH A 95 302 98 HOH HOH . D 4 HOH A 96 303 99 HOH HOH . D 4 HOH A 97 304 100 HOH HOH . D 4 HOH A 98 305 101 HOH HOH . D 4 HOH A 99 306 102 HOH HOH . D 4 HOH A 100 307 103 HOH HOH . D 4 HOH A 101 308 105 HOH HOH . D 4 HOH A 102 309 106 HOH HOH . D 4 HOH A 103 310 108 HOH HOH . D 4 HOH A 104 311 109 HOH HOH . D 4 HOH A 105 312 110 HOH HOH . D 4 HOH A 106 313 111 HOH HOH . D 4 HOH A 107 314 112 HOH HOH . D 4 HOH A 108 315 113 HOH HOH . D 4 HOH A 109 316 115 HOH HOH . D 4 HOH A 110 317 116 HOH HOH . D 4 HOH A 111 318 117 HOH HOH . D 4 HOH A 112 319 118 HOH HOH . D 4 HOH A 113 320 119 HOH HOH . D 4 HOH A 114 321 120 HOH HOH . D 4 HOH A 115 322 121 HOH HOH . D 4 HOH A 116 323 122 HOH HOH . D 4 HOH A 117 324 123 HOH HOH . D 4 HOH A 118 325 124 HOH HOH . D 4 HOH A 119 326 125 HOH HOH . D 4 HOH A 120 327 126 HOH HOH . D 4 HOH A 121 328 127 HOH HOH . D 4 HOH A 122 329 128 HOH HOH . D 4 HOH A 123 330 129 HOH HOH . D 4 HOH A 124 331 131 HOH HOH . D 4 HOH A 125 332 132 HOH HOH . D 4 HOH A 126 333 133 HOH HOH . D 4 HOH A 127 334 134 HOH HOH . D 4 HOH A 128 335 135 HOH HOH . D 4 HOH A 129 336 137 HOH HOH . D 4 HOH A 130 337 138 HOH HOH . D 4 HOH A 131 338 139 HOH HOH . D 4 HOH A 132 339 142 HOH HOH . D 4 HOH A 133 340 143 HOH HOH . D 4 HOH A 134 341 144 HOH HOH . D 4 HOH A 135 342 145 HOH HOH . D 4 HOH A 136 343 146 HOH HOH . D 4 HOH A 137 344 147 HOH HOH . D 4 HOH A 138 345 148 HOH HOH . D 4 HOH A 139 346 149 HOH HOH . D 4 HOH A 140 347 150 HOH HOH . D 4 HOH A 141 348 151 HOH HOH . D 4 HOH A 142 349 152 HOH HOH . D 4 HOH A 143 350 153 HOH HOH . D 4 HOH A 144 351 154 HOH HOH . D 4 HOH A 145 352 155 HOH HOH . D 4 HOH A 146 353 156 HOH HOH . D 4 HOH A 147 354 157 HOH HOH . D 4 HOH A 148 355 158 HOH HOH . D 4 HOH A 149 356 159 HOH HOH . D 4 HOH A 150 357 161 HOH HOH . D 4 HOH A 151 358 162 HOH HOH . D 4 HOH A 152 359 163 HOH HOH . D 4 HOH A 153 360 164 HOH HOH . D 4 HOH A 154 361 165 HOH HOH . D 4 HOH A 155 362 166 HOH HOH . D 4 HOH A 156 363 167 HOH HOH . D 4 HOH A 157 364 168 HOH HOH . D 4 HOH A 158 365 169 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 49.694 _atom_site.Cartn_y 7.199 _atom_site.Cartn_z 11.014 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 206 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #