data_3R0D # _model_server_result.job_id QU02baRRIU9LLLvx_Pb9qA _model_server_result.datetime_utc '2024-10-11 14:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":431}' # _entry.id 3R0D # _exptl.entry_id 3R0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R0D _cell.length_a 145.492 _cell.length_b 145.492 _cell.length_c 199.704 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 18_444 -x-2/3,-x+y-1/3,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -72.746 -41.999923 -66.568 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 61 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A NE2 HIS 64 A HIS 63 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 A NE2 HIS 98 A HIS 97 1_555 E ZN ZN . A ZN 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 A OE2 GLU 139 A GLU 138 1_555 E ZN ZN . A ZN 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc5 A OE1 GLU 139 A GLU 138 1_555 E ZN ZN . A ZN 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc6 A NE2 HIS 215 A HIS 214 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 A OD1 ASP 314 A ASP 313 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc8 A OD2 ASP 314 A ASP 313 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc9 C ZN ZN . A ZN 428 1_555 H O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 D ZN ZN . A ZN 429 1_555 H O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc11 D ZN ZN . A ZN 429 1_555 H O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc12 D ZN ZN . A ZN 429 1_555 H O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc13 D ZN ZN . A ZN 429 1_555 H O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3R0D _atom_sites.fract_transf_matrix[1][1] 0.006873 _atom_sites.fract_transf_matrix[1][2] 0.003968 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PXN A 1 427 427 PXN PXN . C 3 ZN A 1 428 428 ZN ZN . D 3 ZN A 1 429 429 ZN ZN . E 3 ZN A 1 430 430 ZN ZN . F 4 GOL A 1 431 1 GOL GOL . G 4 GOL A 1 432 3 GOL GOL . H 5 HOH A 1 433 0 HOH HOH . H 5 HOH A 2 434 1 HOH HOH . H 5 HOH A 3 435 2 HOH HOH . H 5 HOH A 4 436 3 HOH HOH . H 5 HOH A 5 437 4 HOH HOH . H 5 HOH A 6 438 5 HOH HOH . H 5 HOH A 7 439 6 HOH HOH . H 5 HOH A 8 440 7 HOH HOH . H 5 HOH A 9 441 8 HOH HOH . H 5 HOH A 10 442 9 HOH HOH . H 5 HOH A 11 443 10 HOH HOH . H 5 HOH A 12 444 11 HOH HOH . H 5 HOH A 13 445 12 HOH HOH . H 5 HOH A 14 446 13 HOH HOH . H 5 HOH A 15 447 14 HOH HOH . H 5 HOH A 16 448 15 HOH HOH . H 5 HOH A 17 449 16 HOH HOH . H 5 HOH A 18 450 17 HOH HOH . H 5 HOH A 19 451 18 HOH HOH . H 5 HOH A 20 452 19 HOH HOH . H 5 HOH A 21 453 20 HOH HOH . H 5 HOH A 22 454 21 HOH HOH . H 5 HOH A 23 455 22 HOH HOH . H 5 HOH A 24 456 23 HOH HOH . H 5 HOH A 25 457 24 HOH HOH . H 5 HOH A 26 458 25 HOH HOH . H 5 HOH A 27 459 26 HOH HOH . H 5 HOH A 28 460 27 HOH HOH . H 5 HOH A 29 461 28 HOH HOH . H 5 HOH A 30 462 29 HOH HOH . H 5 HOH A 31 463 30 HOH HOH . H 5 HOH A 32 464 31 HOH HOH . H 5 HOH A 33 465 32 HOH HOH . H 5 HOH A 34 466 33 HOH HOH . H 5 HOH A 35 467 34 HOH HOH . H 5 HOH A 36 468 35 HOH HOH . H 5 HOH A 37 469 36 HOH HOH . H 5 HOH A 38 470 37 HOH HOH . H 5 HOH A 39 471 38 HOH HOH . H 5 HOH A 40 472 39 HOH HOH . H 5 HOH A 41 473 40 HOH HOH . H 5 HOH A 42 474 41 HOH HOH . H 5 HOH A 43 475 42 HOH HOH . H 5 HOH A 44 476 43 HOH HOH . H 5 HOH A 45 477 44 HOH HOH . H 5 HOH A 46 478 45 HOH HOH . H 5 HOH A 47 479 46 HOH HOH . H 5 HOH A 48 480 47 HOH HOH . H 5 HOH A 49 481 48 HOH HOH . H 5 HOH A 50 482 49 HOH HOH . H 5 HOH A 51 483 50 HOH HOH . H 5 HOH A 52 484 51 HOH HOH . H 5 HOH A 53 485 52 HOH HOH . H 5 HOH A 54 486 53 HOH HOH . H 5 HOH A 55 487 54 HOH HOH . H 5 HOH A 56 488 55 HOH HOH . H 5 HOH A 57 489 56 HOH HOH . H 5 HOH A 58 490 57 HOH HOH . H 5 HOH A 59 491 58 HOH HOH . H 5 HOH A 60 492 59 HOH HOH . H 5 HOH A 61 493 60 HOH HOH . H 5 HOH A 62 494 61 HOH HOH . H 5 HOH A 63 495 62 HOH HOH . H 5 HOH A 64 496 63 HOH HOH . H 5 HOH A 65 497 64 HOH HOH . H 5 HOH A 66 498 65 HOH HOH . H 5 HOH A 67 499 66 HOH HOH . H 5 HOH A 68 500 67 HOH HOH . H 5 HOH A 69 501 68 HOH HOH . H 5 HOH A 70 502 69 HOH HOH . H 5 HOH A 71 503 70 HOH HOH . H 5 HOH A 72 504 71 HOH HOH . H 5 HOH A 73 505 72 HOH HOH . H 5 HOH A 74 506 73 HOH HOH . H 5 HOH A 75 507 74 HOH HOH . H 5 HOH A 76 508 75 HOH HOH . H 5 HOH A 77 509 76 HOH HOH . H 5 HOH A 78 510 77 HOH HOH . H 5 HOH A 79 511 78 HOH HOH . H 5 HOH A 80 512 79 HOH HOH . H 5 HOH A 81 513 80 HOH HOH . H 5 HOH A 82 514 81 HOH HOH . H 5 HOH A 83 515 82 HOH HOH . H 5 HOH A 84 516 83 HOH HOH . H 5 HOH A 85 517 84 HOH HOH . H 5 HOH A 86 518 85 HOH HOH . H 5 HOH A 87 519 86 HOH HOH . H 5 HOH A 88 520 87 HOH HOH . H 5 HOH A 89 521 88 HOH HOH . H 5 HOH A 90 522 89 HOH HOH . H 5 HOH A 91 523 90 HOH HOH . H 5 HOH A 92 524 91 HOH HOH . H 5 HOH A 93 525 92 HOH HOH . H 5 HOH A 94 526 93 HOH HOH . H 5 HOH A 95 527 94 HOH HOH . H 5 HOH A 96 528 95 HOH HOH . H 5 HOH A 97 529 96 HOH HOH . H 5 HOH A 98 530 97 HOH HOH . H 5 HOH A 99 531 98 HOH HOH . H 5 HOH A 100 532 99 HOH HOH . H 5 HOH A 101 533 100 HOH HOH . H 5 HOH A 102 534 101 HOH HOH . H 5 HOH A 103 535 102 HOH HOH . H 5 HOH A 104 536 103 HOH HOH . H 5 HOH A 105 537 104 HOH HOH . H 5 HOH A 106 538 105 HOH HOH . H 5 HOH A 107 539 106 HOH HOH . H 5 HOH A 108 540 107 HOH HOH . H 5 HOH A 109 541 108 HOH HOH . H 5 HOH A 110 542 109 HOH HOH . H 5 HOH A 111 543 110 HOH HOH . H 5 HOH A 112 544 111 HOH HOH . H 5 HOH A 113 545 112 HOH HOH . H 5 HOH A 114 546 113 HOH HOH . H 5 HOH A 115 547 114 HOH HOH . H 5 HOH A 116 548 115 HOH HOH . H 5 HOH A 117 549 117 HOH HOH . H 5 HOH A 118 550 118 HOH HOH . H 5 HOH A 119 551 119 HOH HOH . H 5 HOH A 120 552 120 HOH HOH . H 5 HOH A 121 553 121 HOH HOH . H 5 HOH A 122 554 122 HOH HOH . H 5 HOH A 123 555 123 HOH HOH . H 5 HOH A 124 556 124 HOH HOH . H 5 HOH A 125 557 125 HOH HOH . H 5 HOH A 126 558 126 HOH HOH . H 5 HOH A 127 559 127 HOH HOH . H 5 HOH A 128 560 128 HOH HOH . H 5 HOH A 129 561 129 HOH HOH . H 5 HOH A 130 562 130 HOH HOH . H 5 HOH A 131 563 131 HOH HOH . H 5 HOH A 132 564 132 HOH HOH . H 5 HOH A 133 565 133 HOH HOH . H 5 HOH A 134 566 134 HOH HOH . H 5 HOH A 135 567 135 HOH HOH . H 5 HOH A 136 568 136 HOH HOH . H 5 HOH A 137 569 137 HOH HOH . H 5 HOH A 138 570 138 HOH HOH . H 5 HOH A 139 571 139 HOH HOH . H 5 HOH A 140 572 140 HOH HOH . H 5 HOH A 141 573 141 HOH HOH . H 5 HOH A 142 574 142 HOH HOH . H 5 HOH A 143 575 143 HOH HOH . H 5 HOH A 144 576 144 HOH HOH . H 5 HOH A 145 577 145 HOH HOH . H 5 HOH A 146 578 146 HOH HOH . H 5 HOH A 147 579 147 HOH HOH . H 5 HOH A 148 580 148 HOH HOH . H 5 HOH A 149 581 149 HOH HOH . H 5 HOH A 150 582 150 HOH HOH . H 5 HOH A 151 583 151 HOH HOH . H 5 HOH A 152 584 152 HOH HOH . H 5 HOH A 153 585 153 HOH HOH . H 5 HOH A 154 586 154 HOH HOH . H 5 HOH A 155 587 155 HOH HOH . H 5 HOH A 156 588 156 HOH HOH . H 5 HOH A 157 589 157 HOH HOH . H 5 HOH A 158 590 158 HOH HOH . H 5 HOH A 159 591 159 HOH HOH . H 5 HOH A 160 592 160 HOH HOH . H 5 HOH A 161 593 161 HOH HOH . H 5 HOH A 162 594 162 HOH HOH . H 5 HOH A 163 595 163 HOH HOH . H 5 HOH A 164 596 164 HOH HOH . H 5 HOH A 165 597 165 HOH HOH . H 5 HOH A 166 598 166 HOH HOH . H 5 HOH A 167 599 167 HOH HOH . H 5 HOH A 168 600 168 HOH HOH . H 5 HOH A 169 601 169 HOH HOH . H 5 HOH A 170 602 170 HOH HOH . H 5 HOH A 171 603 171 HOH HOH . H 5 HOH A 172 604 172 HOH HOH . H 5 HOH A 173 605 173 HOH HOH . H 5 HOH A 174 606 174 HOH HOH . H 5 HOH A 175 607 175 HOH HOH . H 5 HOH A 176 608 176 HOH HOH . H 5 HOH A 177 609 177 HOH HOH . H 5 HOH A 178 610 178 HOH HOH . H 5 HOH A 179 611 179 HOH HOH . H 5 HOH A 180 612 180 HOH HOH . H 5 HOH A 181 613 181 HOH HOH . H 5 HOH A 182 614 182 HOH HOH . H 5 HOH A 183 615 183 HOH HOH . H 5 HOH A 184 616 184 HOH HOH . H 5 HOH A 185 617 191 HOH HOH . H 5 HOH A 186 618 192 HOH HOH . H 5 HOH A 187 619 193 HOH HOH . H 5 HOH A 188 620 194 HOH HOH . H 5 HOH A 189 621 195 HOH HOH . H 5 HOH A 190 622 196 HOH HOH . H 5 HOH A 191 623 198 HOH HOH . H 5 HOH A 192 624 199 HOH HOH . H 5 HOH A 193 625 200 HOH HOH . H 5 HOH A 194 626 201 HOH HOH . H 5 HOH A 195 627 202 HOH HOH . H 5 HOH A 196 628 203 HOH HOH . H 5 HOH A 197 629 205 HOH HOH . H 5 HOH A 198 630 206 HOH HOH . H 5 HOH A 199 631 207 HOH HOH . H 5 HOH A 200 632 208 HOH HOH . H 5 HOH A 201 633 209 HOH HOH . H 5 HOH A 202 634 210 HOH HOH . H 5 HOH A 203 635 211 HOH HOH . H 5 HOH A 204 636 212 HOH HOH . H 5 HOH A 205 637 213 HOH HOH . H 5 HOH A 206 638 214 HOH HOH . H 5 HOH A 207 639 215 HOH HOH . H 5 HOH A 208 640 217 HOH HOH . H 5 HOH A 209 641 218 HOH HOH . H 5 HOH A 210 642 219 HOH HOH . H 5 HOH A 211 643 220 HOH HOH . H 5 HOH A 212 644 221 HOH HOH . H 5 HOH A 213 645 222 HOH HOH . H 5 HOH A 214 646 223 HOH HOH . H 5 HOH A 215 647 224 HOH HOH . H 5 HOH A 216 648 225 HOH HOH . H 5 HOH A 217 649 226 HOH HOH . H 5 HOH A 218 650 227 HOH HOH . H 5 HOH A 219 651 228 HOH HOH . H 5 HOH A 220 652 229 HOH HOH . H 5 HOH A 221 653 230 HOH HOH . H 5 HOH A 222 654 231 HOH HOH . H 5 HOH A 223 655 232 HOH HOH . H 5 HOH A 224 656 233 HOH HOH . H 5 HOH A 225 657 234 HOH HOH . H 5 HOH A 226 658 235 HOH HOH . H 5 HOH A 227 659 236 HOH HOH . H 5 HOH A 228 660 237 HOH HOH . H 5 HOH A 229 661 238 HOH HOH . H 5 HOH A 230 662 239 HOH HOH . H 5 HOH A 231 663 240 HOH HOH . H 5 HOH A 232 664 241 HOH HOH . H 5 HOH A 233 665 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -37.932 7.992 -33.793 1 43.08 ? C1 GOL 431 A 1 HETATM 2 O O1 GOL . . . F 4 -37.746 9.207 -34.487 1 48.07 ? O1 GOL 431 A 1 HETATM 3 C C2 GOL . . . F 4 -36.987 7.902 -32.597 1 47.23 ? C2 GOL 431 A 1 HETATM 4 O O2 GOL . . . F 4 -35.88 8.757 -32.796 1 47.81 ? O2 GOL 431 A 1 HETATM 5 C C3 GOL . . . F 4 -36.504 6.461 -32.446 1 49.34 ? C3 GOL 431 A 1 HETATM 6 O O3 GOL . . . F 4 -36.769 6.005 -31.136 1 46.97 ? O3 GOL 431 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #