data_3R0Q
#
_model_server_result.job_id            z-Dnl4HBFSkoNzkqiZDIdw 
_model_server_result.datetime_utc      '2025-01-22 21:01:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r0q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1}' 
#
_entry.id    3R0Q 
#
_exptl.entry_id    3R0Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.97 
_cell.angle_gamma         90 
_cell.entry_id            3R0Q 
_cell.length_a            80.552 
_cell.length_b            86.691 
_cell.length_c            114.735 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R0Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     3R0Q 
_atom_sites.fract_transf_matrix[1][1]    0.012414 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000005 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAH C 1 1 1 SAH SAH . 
F 2 SAH G 1 1 1 SAH SAH . 
G 2 SAH A 1 1 1 SAH SAH . 
H 2 SAH E 1 1 1 SAH SAH . 
I 3 HOH C 1 4 4 HOH HOH . 
I 3 HOH C 2 6 6 HOH HOH . 
I 3 HOH C 3 384 384 HOH HOH . 
I 3 HOH C 4 385 385 HOH HOH . 
I 3 HOH C 5 386 386 HOH HOH . 
I 3 HOH C 6 387 387 HOH HOH . 
I 3 HOH C 7 388 388 HOH HOH . 
I 3 HOH C 8 389 389 HOH HOH . 
I 3 HOH C 9 390 390 HOH HOH . 
I 3 HOH C 10 391 391 HOH HOH . 
I 3 HOH C 11 392 392 HOH HOH . 
I 3 HOH C 12 393 393 HOH HOH . 
I 3 HOH C 13 394 394 HOH HOH . 
I 3 HOH C 14 395 395 HOH HOH . 
I 3 HOH C 15 396 396 HOH HOH . 
I 3 HOH C 16 397 397 HOH HOH . 
I 3 HOH C 17 398 398 HOH HOH . 
I 3 HOH C 18 399 399 HOH HOH . 
I 3 HOH C 19 400 400 HOH HOH . 
I 3 HOH C 20 401 401 HOH HOH . 
I 3 HOH C 21 402 402 HOH HOH . 
I 3 HOH C 22 403 403 HOH HOH . 
I 3 HOH C 23 404 404 HOH HOH . 
I 3 HOH C 24 405 405 HOH HOH . 
I 3 HOH C 25 406 406 HOH HOH . 
I 3 HOH C 26 407 407 HOH HOH . 
I 3 HOH C 27 408 408 HOH HOH . 
I 3 HOH C 28 409 409 HOH HOH . 
I 3 HOH C 29 410 410 HOH HOH . 
I 3 HOH C 30 411 411 HOH HOH . 
I 3 HOH C 31 412 412 HOH HOH . 
I 3 HOH C 32 413 413 HOH HOH . 
I 3 HOH C 33 414 414 HOH HOH . 
I 3 HOH C 34 415 415 HOH HOH . 
I 3 HOH C 35 416 416 HOH HOH . 
I 3 HOH C 36 417 417 HOH HOH . 
I 3 HOH C 37 418 418 HOH HOH . 
I 3 HOH C 38 419 419 HOH HOH . 
I 3 HOH C 39 420 420 HOH HOH . 
I 3 HOH C 40 421 421 HOH HOH . 
I 3 HOH C 41 422 422 HOH HOH . 
I 3 HOH C 42 423 423 HOH HOH . 
I 3 HOH C 43 424 424 HOH HOH . 
I 3 HOH C 44 425 425 HOH HOH . 
I 3 HOH C 45 426 426 HOH HOH . 
J 3 HOH G 1 5 5 HOH HOH . 
J 3 HOH G 2 384 384 HOH HOH . 
J 3 HOH G 3 385 385 HOH HOH . 
J 3 HOH G 4 386 386 HOH HOH . 
J 3 HOH G 5 387 387 HOH HOH . 
J 3 HOH G 6 388 388 HOH HOH . 
J 3 HOH G 7 389 389 HOH HOH . 
J 3 HOH G 8 390 390 HOH HOH . 
J 3 HOH G 9 391 391 HOH HOH . 
J 3 HOH G 10 392 392 HOH HOH . 
J 3 HOH G 11 393 393 HOH HOH . 
J 3 HOH G 12 394 394 HOH HOH . 
J 3 HOH G 13 395 395 HOH HOH . 
J 3 HOH G 14 396 396 HOH HOH . 
J 3 HOH G 15 397 397 HOH HOH . 
J 3 HOH G 16 398 398 HOH HOH . 
J 3 HOH G 17 399 399 HOH HOH . 
J 3 HOH G 18 400 400 HOH HOH . 
J 3 HOH G 19 401 401 HOH HOH . 
J 3 HOH G 20 402 402 HOH HOH . 
J 3 HOH G 21 403 403 HOH HOH . 
J 3 HOH G 22 404 404 HOH HOH . 
J 3 HOH G 23 405 405 HOH HOH . 
J 3 HOH G 24 406 406 HOH HOH . 
J 3 HOH G 25 407 407 HOH HOH . 
J 3 HOH G 26 408 408 HOH HOH . 
J 3 HOH G 27 409 409 HOH HOH . 
J 3 HOH G 28 410 410 HOH HOH . 
J 3 HOH G 29 411 411 HOH HOH . 
J 3 HOH G 30 412 412 HOH HOH . 
J 3 HOH G 31 413 413 HOH HOH . 
J 3 HOH G 32 414 414 HOH HOH . 
J 3 HOH G 33 415 415 HOH HOH . 
J 3 HOH G 34 416 416 HOH HOH . 
J 3 HOH G 35 417 417 HOH HOH . 
J 3 HOH G 36 418 418 HOH HOH . 
J 3 HOH G 37 419 419 HOH HOH . 
J 3 HOH G 38 420 420 HOH HOH . 
J 3 HOH G 39 421 421 HOH HOH . 
K 3 HOH A 1 384 384 HOH HOH . 
K 3 HOH A 2 385 385 HOH HOH . 
K 3 HOH A 3 386 386 HOH HOH . 
K 3 HOH A 4 387 387 HOH HOH . 
K 3 HOH A 5 388 388 HOH HOH . 
K 3 HOH A 6 389 389 HOH HOH . 
K 3 HOH A 7 390 390 HOH HOH . 
K 3 HOH A 8 391 391 HOH HOH . 
K 3 HOH A 9 392 392 HOH HOH . 
K 3 HOH A 10 393 393 HOH HOH . 
K 3 HOH A 11 394 394 HOH HOH . 
K 3 HOH A 12 395 395 HOH HOH . 
K 3 HOH A 13 396 396 HOH HOH . 
K 3 HOH A 14 397 397 HOH HOH . 
K 3 HOH A 15 398 398 HOH HOH . 
K 3 HOH A 16 399 399 HOH HOH . 
K 3 HOH A 17 400 400 HOH HOH . 
K 3 HOH A 18 401 401 HOH HOH . 
K 3 HOH A 19 402 402 HOH HOH . 
K 3 HOH A 20 403 403 HOH HOH . 
K 3 HOH A 21 404 404 HOH HOH . 
K 3 HOH A 22 405 405 HOH HOH . 
K 3 HOH A 23 406 406 HOH HOH . 
K 3 HOH A 24 407 407 HOH HOH . 
K 3 HOH A 25 408 408 HOH HOH . 
K 3 HOH A 26 409 409 HOH HOH . 
K 3 HOH A 27 410 410 HOH HOH . 
K 3 HOH A 28 411 411 HOH HOH . 
K 3 HOH A 29 412 412 HOH HOH . 
K 3 HOH A 30 413 413 HOH HOH . 
K 3 HOH A 31 414 414 HOH HOH . 
K 3 HOH A 32 415 415 HOH HOH . 
K 3 HOH A 33 416 416 HOH HOH . 
K 3 HOH A 34 417 417 HOH HOH . 
K 3 HOH A 35 418 8 HOH HOH . 
L 3 HOH E 1 2 2 HOH HOH . 
L 3 HOH E 2 3 3 HOH HOH . 
L 3 HOH E 3 7 7 HOH HOH . 
L 3 HOH E 4 384 384 HOH HOH . 
L 3 HOH E 5 385 385 HOH HOH . 
L 3 HOH E 6 386 386 HOH HOH . 
L 3 HOH E 7 387 387 HOH HOH . 
L 3 HOH E 8 388 388 HOH HOH . 
L 3 HOH E 9 389 389 HOH HOH . 
L 3 HOH E 10 390 390 HOH HOH . 
L 3 HOH E 11 391 391 HOH HOH . 
L 3 HOH E 12 392 392 HOH HOH . 
L 3 HOH E 13 393 393 HOH HOH . 
L 3 HOH E 14 394 394 HOH HOH . 
L 3 HOH E 15 395 395 HOH HOH . 
L 3 HOH E 16 396 396 HOH HOH . 
L 3 HOH E 17 397 397 HOH HOH . 
L 3 HOH E 18 398 398 HOH HOH . 
L 3 HOH E 19 399 399 HOH HOH . 
L 3 HOH E 20 400 400 HOH HOH . 
L 3 HOH E 21 401 401 HOH HOH . 
L 3 HOH E 22 402 402 HOH HOH . 
L 3 HOH E 23 403 403 HOH HOH . 
L 3 HOH E 24 404 404 HOH HOH . 
L 3 HOH E 25 405 405 HOH HOH . 
L 3 HOH E 26 406 406 HOH HOH . 
L 3 HOH E 27 407 407 HOH HOH . 
L 3 HOH E 28 408 408 HOH HOH . 
L 3 HOH E 29 409 409 HOH HOH . 
L 3 HOH E 30 410 410 HOH HOH . 
L 3 HOH E 31 411 411 HOH HOH . 
L 3 HOH E 32 412 412 HOH HOH . 
L 3 HOH E 33 413 413 HOH HOH . 
L 3 HOH E 34 414 414 HOH HOH . 
L 3 HOH E 35 415 415 HOH HOH . 
L 3 HOH E 36 416 416 HOH HOH . 
L 3 HOH E 37 417 417 HOH HOH . 
L 3 HOH E 38 418 418 HOH HOH . 
L 3 HOH E 39 419 419 HOH HOH . 
L 3 HOH E 40 420 420 HOH HOH . 
L 3 HOH E 41 421 421 HOH HOH . 
L 3 HOH E 42 422 422 HOH HOH . 
L 3 HOH E 43 423 423 HOH HOH . 
L 3 HOH E 44 424 424 HOH HOH . 
L 3 HOH E 45 425 425 HOH HOH . 
L 3 HOH E 46 426 426 HOH HOH . 
L 3 HOH E 47 427 427 HOH HOH . 
L 3 HOH E 48 428 428 HOH HOH . 
L 3 HOH E 49 429 429 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . G 2 -48.799 -2.17 -21.338 1 28.68 ? N SAH 1 A 1 
HETATM 2 C CA SAH . . . G 2 -48.114 -3.383 -20.906 1 26.62 ? CA SAH 1 A 1 
HETATM 3 C CB SAH . . . G 2 -47.712 -3.32 -19.428 1 24.57 ? CB SAH 1 A 1 
HETATM 4 C CG SAH . . . G 2 -48.722 -2.644 -18.508 1 26.51 ? CG SAH 1 A 1 
HETATM 5 S SD SAH . . . G 2 -48.293 -2.846 -16.763 1 33.35 ? SD SAH 1 A 1 
HETATM 6 C C SAH . . . G 2 -49.008 -4.578 -21.174 1 23.44 ? C SAH 1 A 1 
HETATM 7 O O SAH . . . G 2 -50.21 -4.383 -21.329 1 22.61 ? O SAH 1 A 1 
HETATM 8 O OXT SAH . . . G 2 -48.568 -5.735 -21.232 1 25.84 ? OXT SAH 1 A 1 
HETATM 9 C C5' SAH . . . G 2 -48.247 -1.053 -16.524 1 27.8 ? C5' SAH 1 A 1 
HETATM 10 C C4' SAH . . . G 2 -47.057 -0.417 -17.225 1 30.6 ? C4' SAH 1 A 1 
HETATM 11 O O4' SAH . . . G 2 -47.299 0.963 -17.369 1 34.77 ? O4' SAH 1 A 1 
HETATM 12 C C3' SAH . . . G 2 -45.762 -0.54 -16.45 1 33.31 ? C3' SAH 1 A 1 
HETATM 13 O O3' SAH . . . G 2 -44.708 -0.691 -17.373 1 37.36 ? O3' SAH 1 A 1 
HETATM 14 C C2' SAH . . . G 2 -45.573 0.804 -15.796 1 32.27 ? C2' SAH 1 A 1 
HETATM 15 O O2' SAH . . . G 2 -44.198 1.073 -15.686 1 38.66 ? O2' SAH 1 A 1 
HETATM 16 C C1' SAH . . . G 2 -46.253 1.722 -16.791 1 32.73 ? C1' SAH 1 A 1 
HETATM 17 N N9 SAH . . . G 2 -46.793 2.974 -16.22 1 31.99 ? N9 SAH 1 A 1 
HETATM 18 C C8 SAH . . . G 2 -47.565 3.155 -15.101 1 31.94 ? C8 SAH 1 A 1 
HETATM 19 N N7 SAH . . . G 2 -47.827 4.479 -14.964 1 29.45 ? N7 SAH 1 A 1 
HETATM 20 C C5 SAH . . . G 2 -47.235 5.146 -15.982 1 33.45 ? C5 SAH 1 A 1 
HETATM 21 C C6 SAH . . . G 2 -47.169 6.491 -16.337 1 33.51 ? C6 SAH 1 A 1 
HETATM 22 N N6 SAH . . . G 2 -47.764 7.437 -15.61 1 36.91 ? N6 SAH 1 A 1 
HETATM 23 N N1 SAH . . . G 2 -46.47 6.863 -17.458 1 34.57 ? N1 SAH 1 A 1 
HETATM 24 C C2 SAH . . . G 2 -45.834 5.917 -18.227 1 35.24 ? C2 SAH 1 A 1 
HETATM 25 N N3 SAH . . . G 2 -45.899 4.591 -17.872 1 34.4 ? N3 SAH 1 A 1 
HETATM 26 C C4 SAH . . . G 2 -46.586 4.21 -16.772 1 33.52 ? C4 SAH 1 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          30 
_model_server_stats.element_count           26 
#