data_3R17 # _model_server_result.job_id pU9BxuQMMQfjX5tTzMvLMg _model_server_result.datetime_utc '2024-11-21 15:59:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":265}' # _entry.id 3R17 # _exptl.entry_id 3R17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.17 _cell.angle_gamma 90 _cell.entry_id 3R17 _cell.length_a 42.378 _cell.length_b 41.261 _cell.length_c 71.943 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D N01 5UM . B 5UM 1 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc2 A NE2 HIS 91 B HIS 94 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 A NE2 HIS 93 B HIS 96 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 A ND1 HIS 116 B HIS 119 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 115 n n S C1 DMS sing 116 n n S C2 DMS sing 117 n n C1 H11 DMS sing 118 n n C1 H12 DMS sing 119 n n C1 H13 DMS sing 120 n n C2 H21 DMS sing 121 n n C2 H22 DMS sing 122 n n C2 H23 DMS sing 123 n n # _atom_sites.entry_id 3R17 _atom_sites.fract_transf_matrix[1][1] 0.023597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005958 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN B 1 262 262 ZN ZN . C 3 GOL B 1 1816 1816 GOL GOL . D 4 5UM B 1 1 1 5UM 5UM . E 3 GOL B 1 263 263 GOL GOL . F 5 DMS B 1 265 265 DMS DMS . G 6 HOH B 1 2 2 HOH HOH . G 6 HOH B 2 3 3 HOH HOH . G 6 HOH B 3 126 126 HOH HOH . G 6 HOH B 4 264 264 HOH HOH . G 6 HOH B 5 266 266 HOH HOH . G 6 HOH B 6 267 267 HOH HOH . G 6 HOH B 7 268 268 HOH HOH . G 6 HOH B 8 269 269 HOH HOH . G 6 HOH B 9 270 270 HOH HOH . G 6 HOH B 10 271 271 HOH HOH . G 6 HOH B 11 272 272 HOH HOH . G 6 HOH B 12 273 273 HOH HOH . G 6 HOH B 13 274 274 HOH HOH . G 6 HOH B 14 275 275 HOH HOH . G 6 HOH B 15 276 276 HOH HOH . G 6 HOH B 16 277 277 HOH HOH . G 6 HOH B 17 278 278 HOH HOH . G 6 HOH B 18 279 279 HOH HOH . G 6 HOH B 19 280 280 HOH HOH . G 6 HOH B 20 281 281 HOH HOH . G 6 HOH B 21 282 282 HOH HOH . G 6 HOH B 22 283 283 HOH HOH . G 6 HOH B 23 284 284 HOH HOH . G 6 HOH B 24 285 285 HOH HOH . G 6 HOH B 25 286 286 HOH HOH . G 6 HOH B 26 287 287 HOH HOH . G 6 HOH B 27 288 288 HOH HOH . G 6 HOH B 28 289 289 HOH HOH . G 6 HOH B 29 290 290 HOH HOH . G 6 HOH B 30 291 291 HOH HOH . G 6 HOH B 31 292 292 HOH HOH . G 6 HOH B 32 293 293 HOH HOH . G 6 HOH B 33 294 294 HOH HOH . G 6 HOH B 34 295 295 HOH HOH . G 6 HOH B 35 296 296 HOH HOH . G 6 HOH B 36 297 297 HOH HOH . G 6 HOH B 37 298 298 HOH HOH . G 6 HOH B 38 299 299 HOH HOH . G 6 HOH B 39 300 300 HOH HOH . G 6 HOH B 40 301 301 HOH HOH . G 6 HOH B 41 302 302 HOH HOH . G 6 HOH B 42 303 303 HOH HOH . G 6 HOH B 43 304 304 HOH HOH . G 6 HOH B 44 305 305 HOH HOH . G 6 HOH B 45 306 306 HOH HOH . G 6 HOH B 46 307 307 HOH HOH . G 6 HOH B 47 308 308 HOH HOH . G 6 HOH B 48 309 309 HOH HOH . G 6 HOH B 49 310 310 HOH HOH . G 6 HOH B 50 311 311 HOH HOH . G 6 HOH B 51 312 312 HOH HOH . G 6 HOH B 52 313 313 HOH HOH . G 6 HOH B 53 314 314 HOH HOH . G 6 HOH B 54 315 315 HOH HOH . G 6 HOH B 55 316 316 HOH HOH . G 6 HOH B 56 317 317 HOH HOH . G 6 HOH B 57 318 318 HOH HOH . G 6 HOH B 58 319 319 HOH HOH . G 6 HOH B 59 320 320 HOH HOH . G 6 HOH B 60 321 321 HOH HOH . G 6 HOH B 61 322 322 HOH HOH . G 6 HOH B 62 323 323 HOH HOH . G 6 HOH B 63 324 324 HOH HOH . G 6 HOH B 64 325 325 HOH HOH . G 6 HOH B 65 326 326 HOH HOH . G 6 HOH B 66 327 327 HOH HOH . G 6 HOH B 67 328 328 HOH HOH . G 6 HOH B 68 329 329 HOH HOH . G 6 HOH B 69 330 330 HOH HOH . G 6 HOH B 70 331 331 HOH HOH . G 6 HOH B 71 332 332 HOH HOH . G 6 HOH B 72 333 333 HOH HOH . G 6 HOH B 73 334 334 HOH HOH . G 6 HOH B 74 335 335 HOH HOH . G 6 HOH B 75 336 336 HOH HOH . G 6 HOH B 76 337 337 HOH HOH . G 6 HOH B 77 338 338 HOH HOH . G 6 HOH B 78 339 339 HOH HOH . G 6 HOH B 79 340 340 HOH HOH . G 6 HOH B 80 341 341 HOH HOH . G 6 HOH B 81 342 342 HOH HOH . G 6 HOH B 82 343 343 HOH HOH . G 6 HOH B 83 344 344 HOH HOH . G 6 HOH B 84 345 345 HOH HOH . G 6 HOH B 85 346 346 HOH HOH . G 6 HOH B 86 347 347 HOH HOH . G 6 HOH B 87 348 348 HOH HOH . G 6 HOH B 88 349 349 HOH HOH . G 6 HOH B 89 350 350 HOH HOH . G 6 HOH B 90 351 351 HOH HOH . G 6 HOH B 91 352 352 HOH HOH . G 6 HOH B 92 353 353 HOH HOH . G 6 HOH B 93 354 354 HOH HOH . G 6 HOH B 94 355 355 HOH HOH . G 6 HOH B 95 356 356 HOH HOH . G 6 HOH B 96 357 357 HOH HOH . G 6 HOH B 97 358 358 HOH HOH . G 6 HOH B 98 359 359 HOH HOH . G 6 HOH B 99 360 360 HOH HOH . G 6 HOH B 100 361 361 HOH HOH . G 6 HOH B 101 362 362 HOH HOH . G 6 HOH B 102 363 363 HOH HOH . G 6 HOH B 103 364 364 HOH HOH . G 6 HOH B 104 365 365 HOH HOH . G 6 HOH B 105 366 366 HOH HOH . G 6 HOH B 106 367 367 HOH HOH . G 6 HOH B 107 368 368 HOH HOH . G 6 HOH B 108 369 369 HOH HOH . G 6 HOH B 109 370 370 HOH HOH . G 6 HOH B 110 371 371 HOH HOH . G 6 HOH B 111 372 372 HOH HOH . G 6 HOH B 112 373 373 HOH HOH . G 6 HOH B 113 374 374 HOH HOH . G 6 HOH B 114 375 375 HOH HOH . G 6 HOH B 115 376 376 HOH HOH . G 6 HOH B 116 377 377 HOH HOH . G 6 HOH B 117 378 378 HOH HOH . G 6 HOH B 118 379 379 HOH HOH . G 6 HOH B 119 380 380 HOH HOH . G 6 HOH B 120 381 381 HOH HOH . G 6 HOH B 121 382 382 HOH HOH . G 6 HOH B 122 383 383 HOH HOH . G 6 HOH B 123 384 384 HOH HOH . G 6 HOH B 124 385 385 HOH HOH . G 6 HOH B 125 386 386 HOH HOH . G 6 HOH B 126 387 387 HOH HOH . G 6 HOH B 127 388 388 HOH HOH . G 6 HOH B 128 389 389 HOH HOH . G 6 HOH B 129 390 390 HOH HOH . G 6 HOH B 130 391 391 HOH HOH . G 6 HOH B 131 392 392 HOH HOH . G 6 HOH B 132 393 393 HOH HOH . G 6 HOH B 133 394 394 HOH HOH . G 6 HOH B 134 395 395 HOH HOH . G 6 HOH B 135 396 396 HOH HOH . G 6 HOH B 136 397 397 HOH HOH . G 6 HOH B 137 398 398 HOH HOH . G 6 HOH B 138 399 399 HOH HOH . G 6 HOH B 139 400 400 HOH HOH . G 6 HOH B 140 401 401 HOH HOH . G 6 HOH B 141 402 402 HOH HOH . G 6 HOH B 142 403 403 HOH HOH . G 6 HOH B 143 404 404 HOH HOH . G 6 HOH B 144 405 405 HOH HOH . G 6 HOH B 145 406 406 HOH HOH . G 6 HOH B 146 407 407 HOH HOH . G 6 HOH B 147 408 408 HOH HOH . G 6 HOH B 148 409 409 HOH HOH . G 6 HOH B 149 410 410 HOH HOH . G 6 HOH B 150 411 411 HOH HOH . G 6 HOH B 151 412 412 HOH HOH . G 6 HOH B 152 413 413 HOH HOH . G 6 HOH B 153 414 414 HOH HOH . G 6 HOH B 154 415 415 HOH HOH . G 6 HOH B 155 416 416 HOH HOH . G 6 HOH B 156 417 417 HOH HOH . G 6 HOH B 157 418 418 HOH HOH . G 6 HOH B 158 419 419 HOH HOH . G 6 HOH B 159 420 420 HOH HOH . G 6 HOH B 160 421 421 HOH HOH . G 6 HOH B 161 422 422 HOH HOH . G 6 HOH B 162 423 423 HOH HOH . G 6 HOH B 163 424 424 HOH HOH . G 6 HOH B 164 425 425 HOH HOH . G 6 HOH B 165 426 426 HOH HOH . G 6 HOH B 166 427 427 HOH HOH . G 6 HOH B 167 428 428 HOH HOH . G 6 HOH B 168 429 429 HOH HOH . G 6 HOH B 169 430 430 HOH HOH . G 6 HOH B 170 431 431 HOH HOH . G 6 HOH B 171 432 432 HOH HOH . G 6 HOH B 172 433 433 HOH HOH . G 6 HOH B 173 434 434 HOH HOH . G 6 HOH B 174 435 435 HOH HOH . G 6 HOH B 175 436 436 HOH HOH . G 6 HOH B 176 437 437 HOH HOH . G 6 HOH B 177 438 438 HOH HOH . G 6 HOH B 178 439 439 HOH HOH . G 6 HOH B 179 440 440 HOH HOH . G 6 HOH B 180 441 441 HOH HOH . G 6 HOH B 181 442 442 HOH HOH . G 6 HOH B 182 443 443 HOH HOH . G 6 HOH B 183 444 444 HOH HOH . G 6 HOH B 184 445 445 HOH HOH . G 6 HOH B 185 446 446 HOH HOH . G 6 HOH B 186 447 447 HOH HOH . G 6 HOH B 187 448 448 HOH HOH . G 6 HOH B 188 449 449 HOH HOH . G 6 HOH B 189 450 450 HOH HOH . G 6 HOH B 190 451 451 HOH HOH . G 6 HOH B 191 452 452 HOH HOH . G 6 HOH B 192 453 453 HOH HOH . G 6 HOH B 193 454 454 HOH HOH . G 6 HOH B 194 455 455 HOH HOH . G 6 HOH B 195 456 456 HOH HOH . G 6 HOH B 196 457 457 HOH HOH . G 6 HOH B 197 458 458 HOH HOH . G 6 HOH B 198 459 459 HOH HOH . G 6 HOH B 199 460 460 HOH HOH . G 6 HOH B 200 461 461 HOH HOH . G 6 HOH B 201 462 462 HOH HOH . G 6 HOH B 202 463 463 HOH HOH . G 6 HOH B 203 464 464 HOH HOH . G 6 HOH B 204 465 465 HOH HOH . G 6 HOH B 205 466 466 HOH HOH . G 6 HOH B 206 467 467 HOH HOH . G 6 HOH B 207 468 468 HOH HOH . G 6 HOH B 208 469 469 HOH HOH . G 6 HOH B 209 470 470 HOH HOH . G 6 HOH B 210 471 471 HOH HOH . G 6 HOH B 211 472 472 HOH HOH . G 6 HOH B 212 473 473 HOH HOH . G 6 HOH B 213 474 474 HOH HOH . G 6 HOH B 214 475 475 HOH HOH . G 6 HOH B 215 476 476 HOH HOH . G 6 HOH B 216 477 477 HOH HOH . G 6 HOH B 217 478 478 HOH HOH . G 6 HOH B 218 479 479 HOH HOH . G 6 HOH B 219 480 480 HOH HOH . G 6 HOH B 220 481 481 HOH HOH . G 6 HOH B 221 482 482 HOH HOH . G 6 HOH B 222 483 483 HOH HOH . G 6 HOH B 223 484 484 HOH HOH . G 6 HOH B 224 485 485 HOH HOH . G 6 HOH B 225 486 486 HOH HOH . G 6 HOH B 226 487 487 HOH HOH . G 6 HOH B 227 488 488 HOH HOH . G 6 HOH B 228 489 489 HOH HOH . G 6 HOH B 229 490 490 HOH HOH . G 6 HOH B 230 491 491 HOH HOH . G 6 HOH B 231 492 492 HOH HOH . G 6 HOH B 232 493 493 HOH HOH . G 6 HOH B 233 494 494 HOH HOH . G 6 HOH B 234 495 495 HOH HOH . G 6 HOH B 235 496 496 HOH HOH . G 6 HOH B 236 497 497 HOH HOH . G 6 HOH B 237 498 498 HOH HOH . G 6 HOH B 238 499 499 HOH HOH . G 6 HOH B 239 500 500 HOH HOH . G 6 HOH B 240 501 501 HOH HOH . G 6 HOH B 241 502 502 HOH HOH . G 6 HOH B 242 503 503 HOH HOH . G 6 HOH B 243 504 504 HOH HOH . G 6 HOH B 244 505 505 HOH HOH . G 6 HOH B 245 506 506 HOH HOH . G 6 HOH B 246 507 507 HOH HOH . G 6 HOH B 247 508 508 HOH HOH . G 6 HOH B 248 509 509 HOH HOH . G 6 HOH B 249 510 510 HOH HOH . G 6 HOH B 250 511 511 HOH HOH . G 6 HOH B 251 512 512 HOH HOH . G 6 HOH B 252 513 513 HOH HOH . G 6 HOH B 253 514 514 HOH HOH . G 6 HOH B 254 515 515 HOH HOH . G 6 HOH B 255 516 516 HOH HOH . G 6 HOH B 256 517 517 HOH HOH . G 6 HOH B 257 518 518 HOH HOH . G 6 HOH B 258 519 519 HOH HOH . G 6 HOH B 259 520 520 HOH HOH . G 6 HOH B 260 521 521 HOH HOH . G 6 HOH B 261 522 522 HOH HOH . G 6 HOH B 262 523 523 HOH HOH . G 6 HOH B 263 524 524 HOH HOH . G 6 HOH B 264 525 525 HOH HOH . G 6 HOH B 265 526 526 HOH HOH . G 6 HOH B 266 527 527 HOH HOH . G 6 HOH B 267 528 528 HOH HOH . G 6 HOH B 268 529 529 HOH HOH . G 6 HOH B 269 530 530 HOH HOH . G 6 HOH B 270 531 531 HOH HOH . G 6 HOH B 271 532 532 HOH HOH . G 6 HOH B 272 533 533 HOH HOH . G 6 HOH B 273 534 534 HOH HOH . G 6 HOH B 274 535 535 HOH HOH . G 6 HOH B 275 536 536 HOH HOH . G 6 HOH B 276 537 537 HOH HOH . G 6 HOH B 277 538 538 HOH HOH . G 6 HOH B 278 539 539 HOH HOH . G 6 HOH B 279 540 540 HOH HOH . G 6 HOH B 280 541 541 HOH HOH . G 6 HOH B 281 542 542 HOH HOH . G 6 HOH B 282 543 543 HOH HOH . G 6 HOH B 283 544 544 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 5 22.735 -11.816 14.894 1 36.05 ? S DMS 265 B 1 HETATM 2 O O DMS . . . F 5 23.66 -11.044 14.052 1 43.21 ? O DMS 265 B 1 HETATM 3 C C1 DMS . . . F 5 22.936 -11.323 16.58 1 18.88 ? C1 DMS 265 B 1 HETATM 4 C C2 DMS . . . F 5 23.114 -13.532 14.73 1 29.75 ? C2 DMS 265 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #