data_3R1A
#
_model_server_result.job_id            SdG2PWhphL3iIxPYBvy7Qw 
_model_server_result.datetime_utc      '2024-11-29 10:30:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r1a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":501}' 
#
_entry.id    3R1A 
#
_exptl.entry_id    3R1A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              176.255 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4-tert-butylphenyl)acetaldehyde 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R1A 
_cell.length_a            134.381 
_cell.length_b            144.549 
_cell.length_c            229.275 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R1A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,Y 1 1 
B,K,L,Z 2 1 
C,M,N,AA 3 1 
D,O,P,BA 4 1 
E,Q,R,CA 5 1 
F,S,T,DA 6 1 
G,U,V,EA 7 1 
H,W,X,FA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG1 THR 283 A THR 302 1_555 J C1 TB2 . A TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? 
covale ? covale2 B OG1 THR 283 B THR 302 1_555 L C1 TB2 . B TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 C OG1 THR 283 C THR 302 1_555 N C1 TB2 . C TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? 
covale ? covale4 D OG1 THR 283 D THR 302 1_555 P C1 TB2 . D TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale5 E OG1 THR 283 E THR 302 1_555 R C1 TB2 . E TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale6 F OG1 THR 283 F THR 302 1_555 T C1 TB2 . F TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.271 ? 
covale ? covale7 G OG1 THR 283 G THR 302 1_555 V C1 TB2 . G TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? 
covale ? covale8 H OG1 THR 283 H THR 302 1_555 X C1 TB2 . H TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc2 B SG CYS 417 B CYS 436 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc3 C SG CYS 417 C CYS 436 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc4 D SG CYS 417 D CYS 436 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc5 CA O HOH . E HOH 5 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc6 E SG CYS 417 E CYS 436 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc7 F SG CYS 417 F CYS 436 1_555 S FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc8 G SG CYS 417 G CYS 436 1_555 U FE HEM . G HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
#
_chem_comp.formula           'C12 H16 O' 
_chem_comp.formula_weight    176.255 
_chem_comp.id                TB2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4-tert-butylphenyl)acetaldehyde 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 TB2 doub 372 n n 
C1 C2 TB2 sing 373 n n 
C2 C3 TB2 sing 374 n n 
C3 C4 TB2 doub 375 n y 
C3 C8 TB2 sing 376 n y 
C4 C5 TB2 sing 377 n y 
C5 C6 TB2 doub 378 n y 
C6 C7 TB2 sing 379 n y 
C6 C9 TB2 sing 380 n n 
C7 C8 TB2 doub 381 n y 
C9 C10 TB2 sing 382 n n 
C9 C11 TB2 sing 383 n n 
C9 C12 TB2 sing 384 n n 
C1 H1 TB2 sing 385 n n 
C2 H2 TB2 sing 386 n n 
C2 H2A TB2 sing 387 n n 
C4 H4 TB2 sing 388 n n 
C5 H5 TB2 sing 389 n n 
C7 H7 TB2 sing 390 n n 
C8 H8 TB2 sing 391 n n 
C10 H10 TB2 sing 392 n n 
C10 H10A TB2 sing 393 n n 
C10 H10B TB2 sing 394 n n 
C11 H11 TB2 sing 395 n n 
C11 H11A TB2 sing 396 n n 
C11 H11B TB2 sing 397 n n 
C12 H12 TB2 sing 398 n n 
C12 H12A TB2 sing 399 n n 
C12 H12B TB2 sing 400 n n 
#
_atom_sites.entry_id                     3R1A 
_atom_sites.fract_transf_matrix[1][1]    0.007442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 HEM A 1 500 500 HEM HEM . 
J 3 TB2 A 1 501 501 TB2 TB2 . 
K 2 HEM B 1 500 500 HEM HEM . 
L 3 TB2 B 1 501 501 TB2 TB2 . 
M 2 HEM C 1 500 500 HEM HEM . 
N 3 TB2 C 1 501 501 TB2 TB2 . 
O 2 HEM D 1 500 500 HEM HEM . 
P 3 TB2 D 1 501 501 TB2 TB2 . 
Q 2 HEM E 1 500 500 HEM HEM . 
R 3 TB2 E 1 501 501 TB2 TB2 . 
S 2 HEM F 1 500 500 HEM HEM . 
T 3 TB2 F 1 501 501 TB2 TB2 . 
U 2 HEM G 1 500 500 HEM HEM . 
V 3 TB2 G 1 501 501 TB2 TB2 . 
W 2 HEM H 1 500 500 HEM HEM . 
X 3 TB2 H 1 501 501 TB2 TB2 . 
Y 4 HOH A 1 1 1 HOH HOH . 
Z 4 HOH B 1 2 2 HOH HOH . 
AA 4 HOH C 1 4 4 HOH HOH . 
BA 4 HOH D 1 3 3 HOH HOH . 
CA 4 HOH E 1 5 5 HOH HOH . 
DA 4 HOH F 1 6 6 HOH HOH . 
EA 4 HOH G 1 7 7 HOH HOH . 
FA 4 HOH H 1 8 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TB2 . . . N 3 -135.9 -10.038 -18.642 1 57.65 ? C1 TB2 501 C 1 
HETATM 2 O O1 TB2 . . . N 3 -135.433 -9.47 -19.663 1 54.86 ? O1 TB2 501 C 1 
HETATM 3 C C2 TB2 . . . N 3 -137.117 -9.384 -18.045 1 51.97 ? C2 TB2 501 C 1 
HETATM 4 C C3 TB2 . . . N 3 -137.449 -8.159 -18.856 1 53.6 ? C3 TB2 501 C 1 
HETATM 5 C C4 TB2 . . . N 3 -136.965 -6.917 -18.462 1 55.66 ? C4 TB2 501 C 1 
HETATM 6 C C5 TB2 . . . N 3 -137.269 -5.784 -19.21 1 52.29 ? C5 TB2 501 C 1 
HETATM 7 C C6 TB2 . . . N 3 -138.049 -5.894 -20.354 1 49.15 ? C6 TB2 501 C 1 
HETATM 8 C C7 TB2 . . . N 3 -138.532 -7.137 -20.747 1 53.53 ? C7 TB2 501 C 1 
HETATM 9 C C8 TB2 . . . N 3 -138.232 -8.272 -19.999 1 52.21 ? C8 TB2 501 C 1 
HETATM 10 C C9 TB2 . . . N 3 -138.379 -4.671 -21.155 1 44.15 ? C9 TB2 501 C 1 
HETATM 11 C C10 TB2 . . . N 3 -139.645 -4.045 -20.583 1 49.14 ? C10 TB2 501 C 1 
HETATM 12 C C11 TB2 . . . N 3 -137.223 -3.684 -21.051 1 40.15 ? C11 TB2 501 C 1 
HETATM 13 C C12 TB2 . . . N 3 -138.63 -5.084 -22.6 1 44.87 ? C12 TB2 501 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#