data_3R1B # _model_server_result.job_id EkLeYFyD_uyoqgcBLyWbHQ _model_server_result.datetime_utc '2024-11-30 19:06:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":608}' # _entry.id 3R1B # _exptl.entry_id 3R1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.22 _cell.angle_gamma 90 _cell.entry_id 3R1B _cell.length_a 193.924 _cell.length_b 153.691 _cell.length_c 129.665 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L 1 1 B,F,M,N,O,P 2 1 C,G,Q,R 3 1 D,H,S,T,U 4 1 A,D,E,H,I,J,K,L,S,T,U 5 1 B,C,F,G,M,N,O,P,Q,R 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N ? 5 O N N ? 5 P N N ? 5 U N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E GLC 1 E 1 GLC A 601 SUC 2 n E FRU 2 E 2 FRU A 601 SUC 2 n F GLC 1 F 1 GLC B 602 SUC 2 n F FRU 2 F 2 FRU B 602 SUC 2 n G GLC 1 G 1 GLC C 603 SUC 2 n G FRU 2 G 2 FRU C 603 SUC 2 n H GLC 1 H 1 GLC D 604 SUC 2 n H FRU 2 H 2 FRU D 604 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG1 THR 283 A THR 302 1_555 J C1 TB2 . A TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale2 B OG1 THR 283 B THR 302 1_555 N C1 TB2 . B TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? covale ? covale3 C OG1 THR 283 C THR 302 1_555 R C1 TB2 . C TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale4 D OG1 THR 283 D THR 302 1_555 T C1 TB2 . D TB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale5 E C1 GLC . E GLC 1 1_555 E O2 FRU . E FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 sing covale ? covale6 F C1 GLC . F GLC 1 1_555 F O2 FRU . F FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 sing covale ? covale7 G C1 GLC . G GLC 1 1_555 G O2 FRU . G FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 sing covale ? covale8 H C1 GLC . H GLC 1 1_555 H O2 FRU . H FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 sing metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc2 B SG CYS 417 B CYS 436 1_555 M FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc3 C SG CYS 417 C CYS 436 1_555 Q FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 D SG CYS 417 D CYS 436 1_555 S FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 70 n n C7 C6 CM5 sing 71 n n C7 H71 CM5 sing 72 n n C7 H72 CM5 sing 73 n n C8 C9 CM5 sing 74 n n C8 H81 CM5 sing 75 n n C8 H82 CM5 sing 76 n n C9 C10 CM5 sing 77 n n C9 H91 CM5 sing 78 n n C9 H92 CM5 sing 79 n n C10 C11 CM5 sing 80 n n C10 H101 CM5 sing 81 n n C10 H102 CM5 sing 82 n n C11 C6 CM5 sing 83 n n C11 H111 CM5 sing 84 n n C11 H112 CM5 sing 85 n n C6 C5 CM5 sing 86 n n C6 H6 CM5 sing 87 n n C5 C4 CM5 sing 88 n n C5 H51 CM5 sing 89 n n C5 H52 CM5 sing 90 n n C4 C3 CM5 sing 91 n n C4 H41 CM5 sing 92 n n C4 H42 CM5 sing 93 n n C3 C2 CM5 sing 94 n n C3 H31A CM5 sing 95 n n C3 H32A CM5 sing 96 n n C2 C1 CM5 sing 97 n n C2 H21A CM5 sing 98 n n C2 H22A CM5 sing 99 n n C1 O12 CM5 sing 100 n n C1 H11 CM5 sing 101 n n C1 H12 CM5 sing 102 n n O12 C13 CM5 sing 103 n n C13 C18 CM5 sing 104 n n C13 O14 CM5 sing 105 n n C13 H13 CM5 sing 106 n n C18 O22 CM5 sing 107 n n C18 C17 CM5 sing 108 n n C18 H18 CM5 sing 109 n n O22 H22 CM5 sing 110 n n C17 O21 CM5 sing 111 n n C17 C16 CM5 sing 112 n n C17 H17 CM5 sing 113 n n O21 H21 CM5 sing 114 n n O14 C15 CM5 sing 115 n n C15 C19 CM5 sing 116 n n C15 C16 CM5 sing 117 n n C15 H15 CM5 sing 118 n n C19 O20 CM5 sing 119 n n C19 H191 CM5 sing 120 n n C19 H192 CM5 sing 121 n n O20 H20 CM5 sing 122 n n C16 O23 CM5 sing 123 n n C16 H16 CM5 sing 124 n n O23 C24 CM5 sing 125 n n C24 O25 CM5 sing 126 n n C24 C29 CM5 sing 127 n n C24 H24 CM5 sing 128 n n O25 C26 CM5 sing 129 n n C26 C30 CM5 sing 130 n n C26 C27 CM5 sing 131 n n C26 H26 CM5 sing 132 n n C30 O31 CM5 sing 133 n n C30 H301 CM5 sing 134 n n C30 H302 CM5 sing 135 n n O31 H31 CM5 sing 136 n n C27 O32 CM5 sing 137 n n C27 C28 CM5 sing 138 n n C27 H27 CM5 sing 139 n n O32 H32 CM5 sing 140 n n C28 O33 CM5 sing 141 n n C28 C29 CM5 sing 142 n n C28 H28 CM5 sing 143 n n O33 H33 CM5 sing 144 n n C29 O34 CM5 sing 145 n n C29 H29 CM5 sing 146 n n O34 H34 CM5 sing 147 n n # _atom_sites.entry_id 3R1B _atom_sites.fract_transf_matrix[1][1] 0.005157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HEM A 1 500 500 HEM HEM . J 4 TB2 A 1 501 501 TB2 TB2 . K 5 CM5 A 1 605 605 CM5 CM5 . L 5 CM5 A 1 608 608 CM5 CM5 . M 3 HEM B 1 500 500 HEM HEM . N 4 TB2 B 1 501 501 TB2 TB2 . O 5 CM5 B 1 606 606 CM5 CM5 . P 5 CM5 B 1 607 607 CM5 CM5 . Q 3 HEM C 1 500 500 HEM HEM . R 4 TB2 C 1 501 501 TB2 TB2 . S 3 HEM D 1 500 500 HEM HEM . T 4 TB2 D 1 501 501 TB2 TB2 . U 5 CM5 D 1 610 610 CM5 CM5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . L 5 47.356 -55.018 -31.049 1 75.8 ? C7 CM5 608 A 1 HETATM 2 C C8 CM5 . . . L 5 48.032 -54.692 -29.721 1 74.65 ? C8 CM5 608 A 1 HETATM 3 C C9 CM5 . . . L 5 49.207 -53.741 -29.915 1 61.57 ? C9 CM5 608 A 1 HETATM 4 C C10 CM5 . . . L 5 48.772 -52.486 -30.662 1 62.83 ? C10 CM5 608 A 1 HETATM 5 C C11 CM5 . . . L 5 48.111 -52.852 -31.984 1 61.92 ? C11 CM5 608 A 1 HETATM 6 C C6 CM5 . . . L 5 46.896 -53.736 -31.732 1 73.38 ? C6 CM5 608 A 1 HETATM 7 C C5 CM5 . . . L 5 46.203 -54.06 -33.05 1 73.06 ? C5 CM5 608 A 1 HETATM 8 C C4 CM5 . . . L 5 47.169 -54.682 -34.051 1 72.29 ? C4 CM5 608 A 1 HETATM 9 C C3 CM5 . . . L 5 46.868 -54.183 -35.459 1 75.27 ? C3 CM5 608 A 1 HETATM 10 C C2 CM5 . . . L 5 46.222 -55.253 -36.332 1 70.51 ? C2 CM5 608 A 1 HETATM 11 C C1 CM5 . . . L 5 44.965 -55.843 -35.703 1 87.07 ? C1 CM5 608 A 1 HETATM 12 O O12 CM5 . . . L 5 44.333 -56.673 -36.675 1 108.98 ? O12 CM5 608 A 1 HETATM 13 C C13 CM5 . . . L 5 43.888 -57.907 -36.116 1 125.25 ? C13 CM5 608 A 1 HETATM 14 C C18 CM5 . . . L 5 42.359 -57.941 -36.061 1 129.21 ? C18 CM5 608 A 1 HETATM 15 O O22 CM5 . . . L 5 41.92 -58.895 -35.083 1 127.69 ? O22 CM5 608 A 1 HETATM 16 C C17 CM5 . . . L 5 41.721 -58.246 -37.415 1 125.66 ? C17 CM5 608 A 1 HETATM 17 O O21 CM5 . . . L 5 41.848 -57.115 -38.284 1 120.15 ? O21 CM5 608 A 1 HETATM 18 O O14 CM5 . . . L 5 44.43 -58.96 -36.916 1 124.11 ? O14 CM5 608 A 1 HETATM 19 C C15 CM5 . . . L 5 43.53 -60.002 -37.28 1 138.06 ? C15 CM5 608 A 1 HETATM 20 C C19 CM5 . . . L 5 44.316 -61.013 -38.104 1 120.4 ? C19 CM5 608 A 1 HETATM 21 O O20 CM5 . . . L 5 45.024 -60.311 -39.134 1 108.02 ? O20 CM5 608 A 1 HETATM 22 C C16 CM5 . . . L 5 42.353 -59.461 -38.084 1 143.91 ? C16 CM5 608 A 1 HETATM 23 O O23 CM5 . . . L 5 41.362 -60.48 -38.205 1 147.16 ? O23 CM5 608 A 1 HETATM 24 C C24 CM5 . . . L 5 40.507 -60.292 -39.333 1 146.48 ? C24 CM5 608 A 1 HETATM 25 O O25 CM5 . . . L 5 41.211 -60.756 -40.495 1 146.51 ? O25 CM5 608 A 1 HETATM 26 C C26 CM5 . . . L 5 40.739 -61.889 -41.254 1 145.23 ? C26 CM5 608 A 1 HETATM 27 C C30 CM5 . . . L 5 40.034 -61.411 -42.522 1 146.05 ? C30 CM5 608 A 1 HETATM 28 O O31 CM5 . . . L 5 40.925 -61.564 -43.634 1 140.59 ? O31 CM5 608 A 1 HETATM 29 C C27 CM5 . . . L 5 39.879 -62.923 -40.51 1 146.64 ? C27 CM5 608 A 1 HETATM 30 O O32 CM5 . . . L 5 40.59 -64.166 -40.461 1 128.05 ? O32 CM5 608 A 1 HETATM 31 C C28 CM5 . . . L 5 39.503 -62.512 -39.097 1 155.2 ? C28 CM5 608 A 1 HETATM 32 O O33 CM5 . . . L 5 38.359 -63.253 -38.658 1 148.79 ? O33 CM5 608 A 1 HETATM 33 C C29 CM5 . . . L 5 39.2 -61.031 -39.102 1 154.95 ? C29 CM5 608 A 1 HETATM 34 O O34 CM5 . . . L 5 38.629 -60.642 -37.848 1 148.25 ? O34 CM5 608 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 34 #