data_3R1R # _model_server_result.job_id EzqsbDCYY57x0PUdyYMGgQ _model_server_result.datetime_utc '2024-11-23 10:47:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":762}' # _entry.id 3R1R # _exptl.entry_id 3R1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R1R _cell.length_a 224.61 _cell.length_b 224.61 _cell.length_c 336.63 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA pentadecameric 15 software_defined_assembly 4 PISA dodecameric 12 software_defined_assembly 5 PISA dodecameric 12 software_defined_assembly 6 PISA nonameric 9 software_defined_assembly 7 PISA hexameric 6 software_defined_assembly 8 PISA dimeric 2 software_defined_assembly 9 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,K 1 1 C,D,I,L 2 1 E,F,J,M 3 1 A,B,C,D,G,H,I,K,L 4 1,2,3 E,F,J,M 5 1,4,5,6,7,8 A,B,C,D,H,I,K,L 6 1,2,3 A,C,G,H,I,K,L 7 1,2,3 A,C,H,I,K,L 8 1,2,3 A,B,H,K 9 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 112.305 194.517966 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -112.305 194.517966 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 225 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 C SG CYS 225 B CYS 225 1_555 C SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 E SG CYS 225 C CYS 225 1_555 E SG CYS 462 C CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3R1R _atom_sites.fract_transf_matrix[1][1] 0.004452 _atom_sites.fract_transf_matrix[1][2] 0.00257 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 762 1 ATP ATP . I 3 ATP B 1 762 1 ATP ATP . J 3 ATP C 1 762 1 ATP ATP . K 4 HOH A 1 763 1 HOH HOH . K 4 HOH A 2 764 2 HOH HOH . K 4 HOH A 3 765 3 HOH HOH . K 4 HOH A 4 766 4 HOH HOH . K 4 HOH A 5 767 5 HOH HOH . K 4 HOH A 6 768 6 HOH HOH . K 4 HOH A 7 769 7 HOH HOH . K 4 HOH A 8 770 8 HOH HOH . K 4 HOH A 9 771 9 HOH HOH . K 4 HOH A 10 772 10 HOH HOH . K 4 HOH A 11 773 11 HOH HOH . K 4 HOH A 12 774 12 HOH HOH . K 4 HOH A 13 775 13 HOH HOH . K 4 HOH A 14 776 14 HOH HOH . K 4 HOH A 15 777 15 HOH HOH . K 4 HOH A 16 778 16 HOH HOH . K 4 HOH A 17 779 17 HOH HOH . K 4 HOH A 18 780 18 HOH HOH . K 4 HOH A 19 781 19 HOH HOH . K 4 HOH A 20 782 20 HOH HOH . K 4 HOH A 21 783 22 HOH HOH . K 4 HOH A 22 784 23 HOH HOH . K 4 HOH A 23 785 24 HOH HOH . K 4 HOH A 24 786 25 HOH HOH . K 4 HOH A 25 787 26 HOH HOH . K 4 HOH A 26 788 27 HOH HOH . K 4 HOH A 27 789 28 HOH HOH . L 4 HOH B 1 763 1 HOH HOH . L 4 HOH B 2 764 2 HOH HOH . L 4 HOH B 3 765 3 HOH HOH . L 4 HOH B 4 766 4 HOH HOH . L 4 HOH B 5 767 5 HOH HOH . L 4 HOH B 6 768 6 HOH HOH . L 4 HOH B 7 769 7 HOH HOH . L 4 HOH B 8 770 8 HOH HOH . L 4 HOH B 9 771 9 HOH HOH . L 4 HOH B 10 772 10 HOH HOH . L 4 HOH B 11 773 11 HOH HOH . L 4 HOH B 12 774 12 HOH HOH . L 4 HOH B 13 775 13 HOH HOH . L 4 HOH B 14 776 14 HOH HOH . L 4 HOH B 15 777 15 HOH HOH . L 4 HOH B 16 778 16 HOH HOH . L 4 HOH B 17 779 17 HOH HOH . L 4 HOH B 18 780 18 HOH HOH . L 4 HOH B 19 781 19 HOH HOH . L 4 HOH B 20 782 20 HOH HOH . L 4 HOH B 21 783 21 HOH HOH . L 4 HOH B 22 784 22 HOH HOH . L 4 HOH B 23 785 23 HOH HOH . L 4 HOH B 24 786 24 HOH HOH . L 4 HOH B 25 787 25 HOH HOH . L 4 HOH B 26 788 26 HOH HOH . L 4 HOH B 27 789 27 HOH HOH . L 4 HOH B 28 790 28 HOH HOH . M 4 HOH C 1 763 21 HOH HOH . M 4 HOH C 2 764 1 HOH HOH . M 4 HOH C 3 765 2 HOH HOH . M 4 HOH C 4 766 3 HOH HOH . M 4 HOH C 5 767 4 HOH HOH . M 4 HOH C 6 768 5 HOH HOH . M 4 HOH C 7 769 6 HOH HOH . M 4 HOH C 8 770 7 HOH HOH . M 4 HOH C 9 771 8 HOH HOH . M 4 HOH C 10 772 9 HOH HOH . M 4 HOH C 11 773 10 HOH HOH . M 4 HOH C 12 774 11 HOH HOH . M 4 HOH C 13 775 12 HOH HOH . M 4 HOH C 14 776 13 HOH HOH . M 4 HOH C 15 777 14 HOH HOH . M 4 HOH C 16 778 15 HOH HOH . M 4 HOH C 17 779 16 HOH HOH . M 4 HOH C 18 780 17 HOH HOH . M 4 HOH C 19 781 18 HOH HOH . M 4 HOH C 20 782 19 HOH HOH . M 4 HOH C 21 783 20 HOH HOH . M 4 HOH C 22 784 21 HOH HOH . M 4 HOH C 23 785 22 HOH HOH . M 4 HOH C 24 786 23 HOH HOH . M 4 HOH C 25 787 24 HOH HOH . M 4 HOH C 26 788 25 HOH HOH . M 4 HOH C 27 789 26 HOH HOH . M 4 HOH C 28 790 27 HOH HOH . M 4 HOH C 29 791 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 3 -43.181 109.486 39.918 1 78.96 ? PG ATP 762 A 1 HETATM 2 O O1G ATP . . . H 3 -44.147 110.56 39.581 1 78.58 ? O1G ATP 762 A 1 HETATM 3 O O2G ATP . . . H 3 -43.868 108.17 39.93 1 78.18 ? O2G ATP 762 A 1 HETATM 4 O O3G ATP . . . H 3 -42.602 109.711 41.262 1 78.36 ? O3G ATP 762 A 1 HETATM 5 P PB ATP . . . H 3 -41.188 108.163 38.305 1 77.41 ? PB ATP 762 A 1 HETATM 6 O O1B ATP . . . H 3 -40.513 107.423 39.402 1 76.85 ? O1B ATP 762 A 1 HETATM 7 O O2B ATP . . . H 3 -42.026 107.225 37.502 1 76.77 ? O2B ATP 762 A 1 HETATM 8 O O3B ATP . . . H 3 -41.988 109.45 38.832 1 77.7 ? O3B ATP 762 A 1 HETATM 9 P PA ATP . . . H 3 -39.996 108.887 35.748 1 74.22 ? PA ATP 762 A 1 HETATM 10 O O1A ATP . . . H 3 -39.772 107.555 35.144 1 73.72 ? O1A ATP 762 A 1 HETATM 11 O O2A ATP . . . H 3 -41.139 109.577 35.102 1 73.47 ? O2A ATP 762 A 1 HETATM 12 O O3A ATP . . . H 3 -40.108 108.87 37.355 1 75.32 ? O3A ATP 762 A 1 HETATM 13 O O5' ATP . . . H 3 -38.619 109.708 35.679 1 72.15 ? O5' ATP 762 A 1 HETATM 14 C C5' ATP . . . H 3 -37.914 109.774 36.949 1 69.47 ? C5' ATP 762 A 1 HETATM 15 C C4' ATP . . . H 3 -37.037 111.012 36.976 1 67.61 ? C4' ATP 762 A 1 HETATM 16 O O4' ATP . . . H 3 -37.811 112.187 36.683 1 66.82 ? O4' ATP 762 A 1 HETATM 17 C C3' ATP . . . H 3 -36.311 111.309 38.277 1 66.67 ? C3' ATP 762 A 1 HETATM 18 O O3' ATP . . . H 3 -35.073 112.003 38.021 1 66.37 ? O3' ATP 762 A 1 HETATM 19 C C2' ATP . . . H 3 -37.389 112.153 39.004 1 66.22 ? C2' ATP 762 A 1 HETATM 20 O O2' ATP . . . H 3 -36.763 113.109 39.887 1 66.08 ? O2' ATP 762 A 1 HETATM 21 C C1' ATP . . . H 3 -38.061 112.9 37.843 1 66.1 ? C1' ATP 762 A 1 HETATM 22 N N9 ATP . . . H 3 -39.465 113.183 38.011 1 65.7 ? N9 ATP 762 A 1 HETATM 23 C C8 ATP . . . H 3 -40.52 112.351 37.863 1 65.7 ? C8 ATP 762 A 1 HETATM 24 N N7 ATP . . . H 3 -41.694 112.812 38.102 1 65.65 ? N7 ATP 762 A 1 HETATM 25 C C5 ATP . . . H 3 -41.444 114.056 38.447 1 65.5 ? C5 ATP 762 A 1 HETATM 26 C C6 ATP . . . H 3 -42.336 115.031 38.813 1 65.47 ? C6 ATP 762 A 1 HETATM 27 N N6 ATP . . . H 3 -43.66 114.881 38.89 1 65.63 ? N6 ATP 762 A 1 HETATM 28 N N1 ATP . . . H 3 -41.81 116.233 39.139 1 65.2 ? N1 ATP 762 A 1 HETATM 29 C C2 ATP . . . H 3 -40.446 116.396 39.061 1 65.34 ? C2 ATP 762 A 1 HETATM 30 N N3 ATP . . . H 3 -39.523 115.529 38.726 1 65.59 ? N3 ATP 762 A 1 HETATM 31 C C4 ATP . . . H 3 -40.097 114.35 38.419 1 65.53 ? C4 ATP 762 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #