data_3R1S # _model_server_result.job_id OOkEk4JmP1m-XRDrI4oB_Q _model_server_result.datetime_utc '2025-01-22 19:54:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":647}' # _entry.id 3R1S # _exptl.entry_id 3R1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.704 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(6-chloropyridin-3-yl)methyl]amino}-5-nitrobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R1S _cell.length_a 53.54 _cell.length_b 71.64 _cell.length_c 72.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 Cl N4 O3' _chem_comp.formula_weight 306.704 _chem_comp.id X73 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[(6-chloropyridin-3-yl)methyl]amino}-5-nitrobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C07 X73 sing 385 n n N01 C12 X73 sing 386 n n N01 HN01 X73 sing 387 n n N02 C11 X73 sing 388 n n N02 H102 X73 sing 389 n n N02 H202 X73 sing 390 n n N03 C15 X73 doub 391 n y N04 O19 X73 sing 392 n n C05 C10 X73 sing 393 n y C05 H05 X73 sing 394 n n C06 C05 X73 doub 395 n y C06 C07 X73 sing 396 n y C07 C08 X73 doub 397 n y C08 C09 X73 sing 398 n y C08 H08 X73 sing 399 n n C09 H09 X73 sing 400 n n C10 N04 X73 sing 401 n n C10 C09 X73 doub 402 n y C11 C06 X73 sing 403 n n C12 C13 X73 sing 404 n n C12 H112 X73 sing 405 n n C12 H212 X73 sing 406 n n C13 C17 X73 sing 407 n y C14 C13 X73 doub 408 n y C14 N03 X73 sing 409 n y C14 H14 X73 sing 410 n n C15 C16 X73 sing 411 n y C15 CL21 X73 sing 412 n n C16 H16 X73 sing 413 n n C17 C16 X73 doub 414 n y C17 H17 X73 sing 415 n n O18 C11 X73 doub 416 n n O20 N04 X73 doub 417 n n # _atom_sites.entry_id 3R1S _atom_sites.fract_transf_matrix[1][1] 0.018678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 646 1 EDO EDO . C 3 X73 A 1 647 1 X73 X73 . D 4 HOH A 1 299 2 HOH HOH . D 4 HOH A 2 300 3 HOH HOH . D 4 HOH A 3 301 4 HOH HOH . D 4 HOH A 4 302 5 HOH HOH . D 4 HOH A 5 303 6 HOH HOH . D 4 HOH A 6 304 7 HOH HOH . D 4 HOH A 7 305 8 HOH HOH . D 4 HOH A 8 306 9 HOH HOH . D 4 HOH A 9 307 10 HOH HOH . D 4 HOH A 10 308 11 HOH HOH . D 4 HOH A 11 309 12 HOH HOH . D 4 HOH A 12 310 13 HOH HOH . D 4 HOH A 13 311 14 HOH HOH . D 4 HOH A 14 312 15 HOH HOH . D 4 HOH A 15 313 16 HOH HOH . D 4 HOH A 16 314 17 HOH HOH . D 4 HOH A 17 315 18 HOH HOH . D 4 HOH A 18 319 22 HOH HOH . D 4 HOH A 19 320 23 HOH HOH . D 4 HOH A 20 321 24 HOH HOH . D 4 HOH A 21 322 25 HOH HOH . D 4 HOH A 22 323 26 HOH HOH . D 4 HOH A 23 324 27 HOH HOH . D 4 HOH A 24 325 28 HOH HOH . D 4 HOH A 25 326 29 HOH HOH . D 4 HOH A 26 327 30 HOH HOH . D 4 HOH A 27 328 31 HOH HOH . D 4 HOH A 28 330 33 HOH HOH . D 4 HOH A 29 331 34 HOH HOH . D 4 HOH A 30 332 35 HOH HOH . D 4 HOH A 31 333 36 HOH HOH . D 4 HOH A 32 334 37 HOH HOH . D 4 HOH A 33 335 38 HOH HOH . D 4 HOH A 34 336 39 HOH HOH . D 4 HOH A 35 337 40 HOH HOH . D 4 HOH A 36 339 42 HOH HOH . D 4 HOH A 37 340 43 HOH HOH . D 4 HOH A 38 341 44 HOH HOH . D 4 HOH A 39 342 45 HOH HOH . D 4 HOH A 40 343 46 HOH HOH . D 4 HOH A 41 344 47 HOH HOH . D 4 HOH A 42 345 48 HOH HOH . D 4 HOH A 43 347 50 HOH HOH . D 4 HOH A 44 348 51 HOH HOH . D 4 HOH A 45 350 53 HOH HOH . D 4 HOH A 46 353 56 HOH HOH . D 4 HOH A 47 354 57 HOH HOH . D 4 HOH A 48 357 60 HOH HOH . D 4 HOH A 49 358 61 HOH HOH . D 4 HOH A 50 359 62 HOH HOH . D 4 HOH A 51 360 63 HOH HOH . D 4 HOH A 52 361 64 HOH HOH . D 4 HOH A 53 363 66 HOH HOH . D 4 HOH A 54 365 68 HOH HOH . D 4 HOH A 55 367 70 HOH HOH . D 4 HOH A 56 369 72 HOH HOH . D 4 HOH A 57 371 74 HOH HOH . D 4 HOH A 58 376 79 HOH HOH . D 4 HOH A 59 377 80 HOH HOH . D 4 HOH A 60 379 82 HOH HOH . D 4 HOH A 61 382 85 HOH HOH . D 4 HOH A 62 384 87 HOH HOH . D 4 HOH A 63 386 89 HOH HOH . D 4 HOH A 64 391 94 HOH HOH . D 4 HOH A 65 392 95 HOH HOH . D 4 HOH A 66 393 96 HOH HOH . D 4 HOH A 67 394 97 HOH HOH . D 4 HOH A 68 395 98 HOH HOH . D 4 HOH A 69 396 99 HOH HOH . D 4 HOH A 70 397 100 HOH HOH . D 4 HOH A 71 401 104 HOH HOH . D 4 HOH A 72 405 108 HOH HOH . D 4 HOH A 73 408 111 HOH HOH . D 4 HOH A 74 410 113 HOH HOH . D 4 HOH A 75 411 114 HOH HOH . D 4 HOH A 76 412 115 HOH HOH . D 4 HOH A 77 413 116 HOH HOH . D 4 HOH A 78 416 119 HOH HOH . D 4 HOH A 79 417 120 HOH HOH . D 4 HOH A 80 418 121 HOH HOH . D 4 HOH A 81 420 123 HOH HOH . D 4 HOH A 82 423 126 HOH HOH . D 4 HOH A 83 426 129 HOH HOH . D 4 HOH A 84 428 131 HOH HOH . D 4 HOH A 85 429 132 HOH HOH . D 4 HOH A 86 431 134 HOH HOH . D 4 HOH A 87 434 137 HOH HOH . D 4 HOH A 88 435 138 HOH HOH . D 4 HOH A 89 439 142 HOH HOH . D 4 HOH A 90 441 144 HOH HOH . D 4 HOH A 91 442 145 HOH HOH . D 4 HOH A 92 447 150 HOH HOH . D 4 HOH A 93 449 152 HOH HOH . D 4 HOH A 94 457 160 HOH HOH . D 4 HOH A 95 460 163 HOH HOH . D 4 HOH A 96 461 164 HOH HOH . D 4 HOH A 97 463 166 HOH HOH . D 4 HOH A 98 464 167 HOH HOH . D 4 HOH A 99 465 168 HOH HOH . D 4 HOH A 100 467 170 HOH HOH . D 4 HOH A 101 468 171 HOH HOH . D 4 HOH A 102 469 172 HOH HOH . D 4 HOH A 103 471 174 HOH HOH . D 4 HOH A 104 473 176 HOH HOH . D 4 HOH A 105 474 177 HOH HOH . D 4 HOH A 106 475 178 HOH HOH . D 4 HOH A 107 478 181 HOH HOH . D 4 HOH A 108 481 184 HOH HOH . D 4 HOH A 109 485 188 HOH HOH . D 4 HOH A 110 486 189 HOH HOH . D 4 HOH A 111 488 191 HOH HOH . D 4 HOH A 112 489 192 HOH HOH . D 4 HOH A 113 490 193 HOH HOH . D 4 HOH A 114 491 194 HOH HOH . D 4 HOH A 115 492 195 HOH HOH . D 4 HOH A 116 495 198 HOH HOH . D 4 HOH A 117 498 201 HOH HOH . D 4 HOH A 118 502 205 HOH HOH . D 4 HOH A 119 503 206 HOH HOH . D 4 HOH A 120 504 207 HOH HOH . D 4 HOH A 121 505 208 HOH HOH . D 4 HOH A 122 506 209 HOH HOH . D 4 HOH A 123 511 214 HOH HOH . D 4 HOH A 124 512 215 HOH HOH . D 4 HOH A 125 515 218 HOH HOH . D 4 HOH A 126 516 219 HOH HOH . D 4 HOH A 127 518 221 HOH HOH . D 4 HOH A 128 519 222 HOH HOH . D 4 HOH A 129 522 225 HOH HOH . D 4 HOH A 130 523 226 HOH HOH . D 4 HOH A 131 530 233 HOH HOH . D 4 HOH A 132 533 236 HOH HOH . D 4 HOH A 133 534 237 HOH HOH . D 4 HOH A 134 535 238 HOH HOH . D 4 HOH A 135 536 239 HOH HOH . D 4 HOH A 136 542 245 HOH HOH . D 4 HOH A 137 545 248 HOH HOH . D 4 HOH A 138 550 253 HOH HOH . D 4 HOH A 139 562 265 HOH HOH . D 4 HOH A 140 565 268 HOH HOH . D 4 HOH A 141 568 271 HOH HOH . D 4 HOH A 142 572 275 HOH HOH . D 4 HOH A 143 573 276 HOH HOH . D 4 HOH A 144 580 283 HOH HOH . D 4 HOH A 145 583 286 HOH HOH . D 4 HOH A 146 584 287 HOH HOH . D 4 HOH A 147 592 295 HOH HOH . D 4 HOH A 148 595 298 HOH HOH . D 4 HOH A 149 596 299 HOH HOH . D 4 HOH A 150 597 300 HOH HOH . D 4 HOH A 151 598 301 HOH HOH . D 4 HOH A 152 599 302 HOH HOH . D 4 HOH A 153 601 304 HOH HOH . D 4 HOH A 154 602 305 HOH HOH . D 4 HOH A 155 603 306 HOH HOH . D 4 HOH A 156 604 307 HOH HOH . D 4 HOH A 157 605 308 HOH HOH . D 4 HOH A 158 606 309 HOH HOH . D 4 HOH A 159 607 310 HOH HOH . D 4 HOH A 160 608 311 HOH HOH . D 4 HOH A 161 609 312 HOH HOH . D 4 HOH A 162 610 313 HOH HOH . D 4 HOH A 163 611 314 HOH HOH . D 4 HOH A 164 612 315 HOH HOH . D 4 HOH A 165 613 316 HOH HOH . D 4 HOH A 166 615 318 HOH HOH . D 4 HOH A 167 616 319 HOH HOH . D 4 HOH A 168 617 320 HOH HOH . D 4 HOH A 169 618 321 HOH HOH . D 4 HOH A 170 619 322 HOH HOH . D 4 HOH A 171 620 323 HOH HOH . D 4 HOH A 172 621 324 HOH HOH . D 4 HOH A 173 622 325 HOH HOH . D 4 HOH A 174 623 326 HOH HOH . D 4 HOH A 175 624 327 HOH HOH . D 4 HOH A 176 625 328 HOH HOH . D 4 HOH A 177 626 329 HOH HOH . D 4 HOH A 178 627 330 HOH HOH . D 4 HOH A 179 628 331 HOH HOH . D 4 HOH A 180 629 332 HOH HOH . D 4 HOH A 181 630 333 HOH HOH . D 4 HOH A 182 631 334 HOH HOH . D 4 HOH A 183 632 335 HOH HOH . D 4 HOH A 184 634 337 HOH HOH . D 4 HOH A 185 635 338 HOH HOH . D 4 HOH A 186 637 340 HOH HOH . D 4 HOH A 187 638 341 HOH HOH . D 4 HOH A 188 639 342 HOH HOH . D 4 HOH A 189 640 343 HOH HOH . D 4 HOH A 190 642 345 HOH HOH . D 4 HOH A 191 643 346 HOH HOH . D 4 HOH A 192 644 347 HOH HOH . D 4 HOH A 193 645 348 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X73 . . . C 3 64.108 81.818 -12.306 1 28.47 ? N01 X73 647 A 1 HETATM 2 N N02 X73 . . . C 3 66.825 81.437 -15.322 1 22.52 ? N02 X73 647 A 1 HETATM 3 N N03 X73 . . . C 3 62.379 84.919 -9.933 1 37.81 ? N03 X73 647 A 1 HETATM 4 N N04 X73 . . . C 3 69.086 79.864 -11.102 1 34.57 ? N04 X73 647 A 1 HETATM 5 C C05 X73 . . . C 3 67.637 80.878 -12.657 1 30.96 ? C05 X73 647 A 1 HETATM 6 C C06 X73 . . . C 3 66.338 81.391 -12.983 1 28.18 ? C06 X73 647 A 1 HETATM 7 C C07 X73 . . . C 3 65.288 81.348 -11.999 1 29.09 ? C07 X73 647 A 1 HETATM 8 C C08 X73 . . . C 3 65.571 80.785 -10.7 1 30.62 ? C08 X73 647 A 1 HETATM 9 C C09 X73 . . . C 3 66.869 80.279 -10.393 1 31.25 ? C09 X73 647 A 1 HETATM 10 C C10 X73 . . . C 3 67.914 80.321 -11.372 1 32.36 ? C10 X73 647 A 1 HETATM 11 C C11 X73 . . . C 3 66.121 81.917 -14.245 1 26.01 ? C11 X73 647 A 1 HETATM 12 C C12 X73 . . . C 3 62.856 81.493 -11.587 1 32.23 ? C12 X73 647 A 1 HETATM 13 C C13 X73 . . . C 3 62.567 82.553 -10.554 1 34.9 ? C13 X73 647 A 1 HETATM 14 C C14 X73 . . . C 3 62.633 83.93 -10.86 1 35.23 ? C14 X73 647 A 1 HETATM 15 C C15 X73 . . . C 3 62.045 84.521 -8.655 1 38.99 ? C15 X73 647 A 1 HETATM 16 C C16 X73 . . . C 3 61.954 83.177 -8.259 1 38.34 ? C16 X73 647 A 1 HETATM 17 C C17 X73 . . . C 3 62.223 82.186 -9.234 1 36.73 ? C17 X73 647 A 1 HETATM 18 O O18 X73 . . . C 3 65.299 82.796 -14.42 1 22.96 ? O18 X73 647 A 1 HETATM 19 O O19 X73 . . . C 3 69.284 79.112 -10.04 1 37.53 ? O19 X73 647 A 1 HETATM 20 O O20 X73 . . . C 3 70.119 80.126 -11.891 1 35.97 ? O20 X73 647 A 1 HETATM 21 CL CL21 X73 . . . C 3 61.719 85.727 -7.479 1 43.02 ? CL21 X73 647 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #