data_3R1Y # _model_server_result.job_id isWgfDs1L6yYXrGQ0vWFBw _model_server_result.datetime_utc '2024-10-12 12:26:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":488}' # _entry.id 3R1Y # _exptl.entry_id 3R1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 227.262 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(pyridin-3-ylmethyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R1Y _cell.length_a 54.21 _cell.length_b 72.73 _cell.length_c 73.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N3 O' _chem_comp.formula_weight 227.262 _chem_comp.id X76 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(pyridin-3-ylmethyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C10 X76 sing 385 n n O17 C10 X76 doub 386 n n C10 C05 X76 sing 387 n n C05 C04 X76 doub 388 n y C05 C06 X76 sing 389 n y C04 C09 X76 sing 390 n y N01 C06 X76 sing 391 n n N01 C11 X76 sing 392 n n C06 C07 X76 doub 393 n y C11 C12 X76 sing 394 n n C09 C08 X76 doub 395 n y C13 C12 X76 doub 396 n y C13 N03 X76 sing 397 n y C07 C08 X76 sing 398 n y C12 C16 X76 sing 399 n y N03 C14 X76 doub 400 n y C16 C15 X76 doub 401 n y C14 C15 X76 sing 402 n y N01 HN01 X76 sing 403 n n N02 H102 X76 sing 404 n n N02 H202 X76 sing 405 n n C04 H04 X76 sing 406 n n C07 H07 X76 sing 407 n n C08 H08 X76 sing 408 n n C09 H09 X76 sing 409 n n C11 H111 X76 sing 410 n n C11 H211 X76 sing 411 n n C13 H13 X76 sing 412 n n C14 H14 X76 sing 413 n n C15 H15 X76 sing 414 n n C16 H16 X76 sing 415 n n # _atom_sites.entry_id 3R1Y _atom_sites.fract_transf_matrix[1][1] 0.018447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 487 1 EDO EDO . C 3 X76 A 1 488 1 X76 X76 . D 4 HOH A 1 299 1 HOH HOH . D 4 HOH A 2 300 2 HOH HOH . D 4 HOH A 3 301 3 HOH HOH . D 4 HOH A 4 302 4 HOH HOH . D 4 HOH A 5 303 5 HOH HOH . D 4 HOH A 6 304 6 HOH HOH . D 4 HOH A 7 305 7 HOH HOH . D 4 HOH A 8 306 8 HOH HOH . D 4 HOH A 9 307 9 HOH HOH . D 4 HOH A 10 308 10 HOH HOH . D 4 HOH A 11 309 11 HOH HOH . D 4 HOH A 12 310 12 HOH HOH . D 4 HOH A 13 311 13 HOH HOH . D 4 HOH A 14 312 14 HOH HOH . D 4 HOH A 15 313 15 HOH HOH . D 4 HOH A 16 314 16 HOH HOH . D 4 HOH A 17 316 18 HOH HOH . D 4 HOH A 18 317 19 HOH HOH . D 4 HOH A 19 318 20 HOH HOH . D 4 HOH A 20 319 21 HOH HOH . D 4 HOH A 21 320 22 HOH HOH . D 4 HOH A 22 321 23 HOH HOH . D 4 HOH A 23 322 24 HOH HOH . D 4 HOH A 24 323 25 HOH HOH . D 4 HOH A 25 324 26 HOH HOH . D 4 HOH A 26 325 27 HOH HOH . D 4 HOH A 27 326 28 HOH HOH . D 4 HOH A 28 327 29 HOH HOH . D 4 HOH A 29 328 30 HOH HOH . D 4 HOH A 30 329 31 HOH HOH . D 4 HOH A 31 330 32 HOH HOH . D 4 HOH A 32 331 33 HOH HOH . D 4 HOH A 33 332 34 HOH HOH . D 4 HOH A 34 333 35 HOH HOH . D 4 HOH A 35 334 36 HOH HOH . D 4 HOH A 36 335 37 HOH HOH . D 4 HOH A 37 336 38 HOH HOH . D 4 HOH A 38 337 39 HOH HOH . D 4 HOH A 39 338 40 HOH HOH . D 4 HOH A 40 339 41 HOH HOH . D 4 HOH A 41 340 42 HOH HOH . D 4 HOH A 42 341 43 HOH HOH . D 4 HOH A 43 342 44 HOH HOH . D 4 HOH A 44 343 45 HOH HOH . D 4 HOH A 45 344 46 HOH HOH . D 4 HOH A 46 345 47 HOH HOH . D 4 HOH A 47 346 48 HOH HOH . D 4 HOH A 48 347 49 HOH HOH . D 4 HOH A 49 348 50 HOH HOH . D 4 HOH A 50 349 51 HOH HOH . D 4 HOH A 51 350 52 HOH HOH . D 4 HOH A 52 351 53 HOH HOH . D 4 HOH A 53 352 54 HOH HOH . D 4 HOH A 54 353 55 HOH HOH . D 4 HOH A 55 354 56 HOH HOH . D 4 HOH A 56 355 57 HOH HOH . D 4 HOH A 57 356 58 HOH HOH . D 4 HOH A 58 357 59 HOH HOH . D 4 HOH A 59 358 60 HOH HOH . D 4 HOH A 60 359 61 HOH HOH . D 4 HOH A 61 360 62 HOH HOH . D 4 HOH A 62 362 64 HOH HOH . D 4 HOH A 63 363 65 HOH HOH . D 4 HOH A 64 364 66 HOH HOH . D 4 HOH A 65 365 67 HOH HOH . D 4 HOH A 66 366 68 HOH HOH . D 4 HOH A 67 367 69 HOH HOH . D 4 HOH A 68 368 70 HOH HOH . D 4 HOH A 69 370 72 HOH HOH . D 4 HOH A 70 371 73 HOH HOH . D 4 HOH A 71 372 74 HOH HOH . D 4 HOH A 72 373 75 HOH HOH . D 4 HOH A 73 374 76 HOH HOH . D 4 HOH A 74 375 77 HOH HOH . D 4 HOH A 75 376 78 HOH HOH . D 4 HOH A 76 377 79 HOH HOH . D 4 HOH A 77 378 80 HOH HOH . D 4 HOH A 78 379 81 HOH HOH . D 4 HOH A 79 380 82 HOH HOH . D 4 HOH A 80 381 83 HOH HOH . D 4 HOH A 81 382 84 HOH HOH . D 4 HOH A 82 383 85 HOH HOH . D 4 HOH A 83 385 87 HOH HOH . D 4 HOH A 84 386 88 HOH HOH . D 4 HOH A 85 387 89 HOH HOH . D 4 HOH A 86 388 90 HOH HOH . D 4 HOH A 87 389 91 HOH HOH . D 4 HOH A 88 390 92 HOH HOH . D 4 HOH A 89 391 93 HOH HOH . D 4 HOH A 90 392 94 HOH HOH . D 4 HOH A 91 393 95 HOH HOH . D 4 HOH A 92 394 96 HOH HOH . D 4 HOH A 93 395 97 HOH HOH . D 4 HOH A 94 396 98 HOH HOH . D 4 HOH A 95 397 99 HOH HOH . D 4 HOH A 96 398 100 HOH HOH . D 4 HOH A 97 399 101 HOH HOH . D 4 HOH A 98 400 102 HOH HOH . D 4 HOH A 99 401 103 HOH HOH . D 4 HOH A 100 402 104 HOH HOH . D 4 HOH A 101 403 105 HOH HOH . D 4 HOH A 102 404 106 HOH HOH . D 4 HOH A 103 405 107 HOH HOH . D 4 HOH A 104 406 108 HOH HOH . D 4 HOH A 105 407 109 HOH HOH . D 4 HOH A 106 408 110 HOH HOH . D 4 HOH A 107 409 111 HOH HOH . D 4 HOH A 108 410 112 HOH HOH . D 4 HOH A 109 411 113 HOH HOH . D 4 HOH A 110 412 114 HOH HOH . D 4 HOH A 111 413 115 HOH HOH . D 4 HOH A 112 414 116 HOH HOH . D 4 HOH A 113 415 117 HOH HOH . D 4 HOH A 114 416 118 HOH HOH . D 4 HOH A 115 418 120 HOH HOH . D 4 HOH A 116 419 121 HOH HOH . D 4 HOH A 117 420 122 HOH HOH . D 4 HOH A 118 421 123 HOH HOH . D 4 HOH A 119 423 125 HOH HOH . D 4 HOH A 120 424 126 HOH HOH . D 4 HOH A 121 427 129 HOH HOH . D 4 HOH A 122 428 130 HOH HOH . D 4 HOH A 123 429 131 HOH HOH . D 4 HOH A 124 430 132 HOH HOH . D 4 HOH A 125 433 135 HOH HOH . D 4 HOH A 126 434 136 HOH HOH . D 4 HOH A 127 435 137 HOH HOH . D 4 HOH A 128 436 138 HOH HOH . D 4 HOH A 129 437 139 HOH HOH . D 4 HOH A 130 438 140 HOH HOH . D 4 HOH A 131 440 142 HOH HOH . D 4 HOH A 132 441 143 HOH HOH . D 4 HOH A 133 442 144 HOH HOH . D 4 HOH A 134 443 145 HOH HOH . D 4 HOH A 135 445 147 HOH HOH . D 4 HOH A 136 446 148 HOH HOH . D 4 HOH A 137 447 149 HOH HOH . D 4 HOH A 138 448 150 HOH HOH . D 4 HOH A 139 449 151 HOH HOH . D 4 HOH A 140 450 152 HOH HOH . D 4 HOH A 141 451 153 HOH HOH . D 4 HOH A 142 452 154 HOH HOH . D 4 HOH A 143 453 155 HOH HOH . D 4 HOH A 144 454 156 HOH HOH . D 4 HOH A 145 456 158 HOH HOH . D 4 HOH A 146 457 159 HOH HOH . D 4 HOH A 147 458 160 HOH HOH . D 4 HOH A 148 459 161 HOH HOH . D 4 HOH A 149 460 162 HOH HOH . D 4 HOH A 150 461 163 HOH HOH . D 4 HOH A 151 462 164 HOH HOH . D 4 HOH A 152 463 165 HOH HOH . D 4 HOH A 153 464 166 HOH HOH . D 4 HOH A 154 465 167 HOH HOH . D 4 HOH A 155 466 168 HOH HOH . D 4 HOH A 156 467 169 HOH HOH . D 4 HOH A 157 468 170 HOH HOH . D 4 HOH A 158 469 171 HOH HOH . D 4 HOH A 159 471 173 HOH HOH . D 4 HOH A 160 472 174 HOH HOH . D 4 HOH A 161 473 175 HOH HOH . D 4 HOH A 162 474 176 HOH HOH . D 4 HOH A 163 475 177 HOH HOH . D 4 HOH A 164 479 181 HOH HOH . D 4 HOH A 165 480 182 HOH HOH . D 4 HOH A 166 481 183 HOH HOH . D 4 HOH A 167 482 184 HOH HOH . D 4 HOH A 168 484 186 HOH HOH . D 4 HOH A 169 485 187 HOH HOH . D 4 HOH A 170 486 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X76 . . . C 3 118.77 -26.104 -48.833 1 26.58 ? N01 X76 488 A 1 HETATM 2 N N02 X76 . . . C 3 121.744 -26.315 -51.656 1 24.53 ? N02 X76 488 A 1 HETATM 3 N N03 X76 . . . C 3 117.201 -22.988 -46.274 1 30.7 ? N03 X76 488 A 1 HETATM 4 C C04 X76 . . . C 3 122.351 -26.904 -48.934 1 28.31 ? C04 X76 488 A 1 HETATM 5 C C05 X76 . . . C 3 121.07 -26.42 -49.358 1 26.6 ? C05 X76 488 A 1 HETATM 6 C C06 X76 . . . C 3 119.941 -26.541 -48.46 1 27.49 ? C06 X76 488 A 1 HETATM 7 C C07 X76 . . . C 3 120.142 -27.151 -47.163 1 27.99 ? C07 X76 488 A 1 HETATM 8 C C08 X76 . . . C 3 121.421 -27.622 -46.768 1 28.98 ? C08 X76 488 A 1 HETATM 9 C C09 X76 . . . C 3 122.524 -27.498 -47.652 1 29.55 ? C09 X76 488 A 1 HETATM 10 C C10 X76 . . . C 3 120.952 -25.855 -50.626 1 26.21 ? C10 X76 488 A 1 HETATM 11 C C11 X76 . . . C 3 117.497 -26.357 -48.091 1 29.58 ? C11 X76 488 A 1 HETATM 12 C C12 X76 . . . C 3 117.277 -25.332 -47.004 1 30.04 ? C12 X76 488 A 1 HETATM 13 C C13 X76 . . . C 3 117.392 -23.945 -47.249 1 30.51 ? C13 X76 488 A 1 HETATM 14 C C14 X76 . . . C 3 116.881 -23.42 -45.007 1 32.39 ? C14 X76 488 A 1 HETATM 15 C C15 X76 . . . C 3 116.744 -24.782 -44.666 1 31.84 ? C15 X76 488 A 1 HETATM 16 C C16 X76 . . . C 3 116.948 -25.744 -45.689 1 32.34 ? C16 X76 488 A 1 HETATM 17 O O17 X76 . . . C 3 120.155 -24.97 -50.856 1 23.85 ? O17 X76 488 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #