data_3R28 # _model_server_result.job_id MFli-b1rgLxKhbaf4l-CQw _model_server_result.datetime_utc '2025-02-05 18:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":782}' # _entry.id 3R28 # _exptl.entry_id 3R28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.688 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-5-nitro-2-[(3,4,5-trifluorobenzyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R28 _cell.length_a 53.51 _cell.length_b 71.6 _cell.length_c 72.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H9 Cl F3 N3 O3' _chem_comp.formula_weight 359.688 _chem_comp.id XA0 _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-5-nitro-2-[(3,4,5-trifluorobenzyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C06 XA0 sing 385 n n N01 C11 XA0 sing 386 n n N01 HN01 XA0 sing 387 n n N02 C10 XA0 sing 388 n n N02 H102 XA0 sing 389 n n N02 H202 XA0 sing 390 n n N03 O20 XA0 sing 391 n n C04 C09 XA0 sing 392 n y C04 H04 XA0 sing 393 n n C05 C04 XA0 doub 394 n y C05 C06 XA0 sing 395 n y C06 C07 XA0 doub 396 n y C07 C08 XA0 sing 397 n y C07 H07 XA0 sing 398 n n C08 CL21 XA0 sing 399 n n C09 N03 XA0 sing 400 n n C09 C08 XA0 doub 401 n y C10 C05 XA0 sing 402 n n C11 C12 XA0 sing 403 n n C11 H111 XA0 sing 404 n n C11 H211 XA0 sing 405 n n C12 C13 XA0 sing 406 n y C13 C14 XA0 doub 407 n y C13 H13 XA0 sing 408 n n C14 F23 XA0 sing 409 n n C15 C14 XA0 sing 410 n y C15 F24 XA0 sing 411 n n C16 C15 XA0 doub 412 n y C17 C12 XA0 doub 413 n y C17 C16 XA0 sing 414 n y C17 H17 XA0 sing 415 n n O18 C10 XA0 doub 416 n n O19 N03 XA0 doub 417 n n F22 C16 XA0 sing 418 n n # _atom_sites.entry_id 3R28 _atom_sites.fract_transf_matrix[1][1] 0.018688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 781 1 EDO EDO . C 3 XA0 A 1 782 1 XA0 XA0 . D 4 HOH A 1 299 1 HOH HOH . D 4 HOH A 2 300 2 HOH HOH . D 4 HOH A 3 301 3 HOH HOH . D 4 HOH A 4 302 4 HOH HOH . D 4 HOH A 5 303 5 HOH HOH . D 4 HOH A 6 304 6 HOH HOH . D 4 HOH A 7 305 7 HOH HOH . D 4 HOH A 8 306 8 HOH HOH . D 4 HOH A 9 307 9 HOH HOH . D 4 HOH A 10 308 10 HOH HOH . D 4 HOH A 11 309 11 HOH HOH . D 4 HOH A 12 310 12 HOH HOH . D 4 HOH A 13 311 13 HOH HOH . D 4 HOH A 14 312 14 HOH HOH . D 4 HOH A 15 313 15 HOH HOH . D 4 HOH A 16 314 16 HOH HOH . D 4 HOH A 17 315 17 HOH HOH . D 4 HOH A 18 316 18 HOH HOH . D 4 HOH A 19 317 19 HOH HOH . D 4 HOH A 20 318 20 HOH HOH . D 4 HOH A 21 319 21 HOH HOH . D 4 HOH A 22 321 23 HOH HOH . D 4 HOH A 23 322 24 HOH HOH . D 4 HOH A 24 324 26 HOH HOH . D 4 HOH A 25 325 27 HOH HOH . D 4 HOH A 26 327 29 HOH HOH . D 4 HOH A 27 328 30 HOH HOH . D 4 HOH A 28 330 32 HOH HOH . D 4 HOH A 29 331 33 HOH HOH . D 4 HOH A 30 332 34 HOH HOH . D 4 HOH A 31 333 35 HOH HOH . D 4 HOH A 32 335 37 HOH HOH . D 4 HOH A 33 336 38 HOH HOH . D 4 HOH A 34 337 39 HOH HOH . D 4 HOH A 35 338 40 HOH HOH . D 4 HOH A 36 339 41 HOH HOH . D 4 HOH A 37 340 42 HOH HOH . D 4 HOH A 38 341 43 HOH HOH . D 4 HOH A 39 342 44 HOH HOH . D 4 HOH A 40 343 45 HOH HOH . D 4 HOH A 41 344 46 HOH HOH . D 4 HOH A 42 345 47 HOH HOH . D 4 HOH A 43 346 48 HOH HOH . D 4 HOH A 44 348 50 HOH HOH . D 4 HOH A 45 349 51 HOH HOH . D 4 HOH A 46 350 52 HOH HOH . D 4 HOH A 47 351 53 HOH HOH . D 4 HOH A 48 355 57 HOH HOH . D 4 HOH A 49 358 60 HOH HOH . D 4 HOH A 50 359 61 HOH HOH . D 4 HOH A 51 361 63 HOH HOH . D 4 HOH A 52 362 64 HOH HOH . D 4 HOH A 53 363 65 HOH HOH . D 4 HOH A 54 367 69 HOH HOH . D 4 HOH A 55 370 72 HOH HOH . D 4 HOH A 56 371 73 HOH HOH . D 4 HOH A 57 372 74 HOH HOH . D 4 HOH A 58 373 75 HOH HOH . D 4 HOH A 59 376 78 HOH HOH . D 4 HOH A 60 377 79 HOH HOH . D 4 HOH A 61 378 80 HOH HOH . D 4 HOH A 62 379 81 HOH HOH . D 4 HOH A 63 382 84 HOH HOH . D 4 HOH A 64 384 86 HOH HOH . D 4 HOH A 65 385 87 HOH HOH . D 4 HOH A 66 388 90 HOH HOH . D 4 HOH A 67 389 91 HOH HOH . D 4 HOH A 68 390 92 HOH HOH . D 4 HOH A 69 391 93 HOH HOH . D 4 HOH A 70 392 94 HOH HOH . D 4 HOH A 71 393 95 HOH HOH . D 4 HOH A 72 394 96 HOH HOH . D 4 HOH A 73 395 97 HOH HOH . D 4 HOH A 74 396 98 HOH HOH . D 4 HOH A 75 398 100 HOH HOH . D 4 HOH A 76 400 102 HOH HOH . D 4 HOH A 77 401 103 HOH HOH . D 4 HOH A 78 403 105 HOH HOH . D 4 HOH A 79 404 106 HOH HOH . D 4 HOH A 80 406 108 HOH HOH . D 4 HOH A 81 409 111 HOH HOH . D 4 HOH A 82 411 113 HOH HOH . D 4 HOH A 83 414 116 HOH HOH . D 4 HOH A 84 416 118 HOH HOH . D 4 HOH A 85 417 119 HOH HOH . D 4 HOH A 86 418 120 HOH HOH . D 4 HOH A 87 419 121 HOH HOH . D 4 HOH A 88 421 123 HOH HOH . D 4 HOH A 89 424 126 HOH HOH . D 4 HOH A 90 430 132 HOH HOH . D 4 HOH A 91 434 136 HOH HOH . D 4 HOH A 92 435 137 HOH HOH . D 4 HOH A 93 439 141 HOH HOH . D 4 HOH A 94 442 144 HOH HOH . D 4 HOH A 95 448 150 HOH HOH . D 4 HOH A 96 450 152 HOH HOH . D 4 HOH A 97 454 156 HOH HOH . D 4 HOH A 98 458 160 HOH HOH . D 4 HOH A 99 459 161 HOH HOH . D 4 HOH A 100 461 163 HOH HOH . D 4 HOH A 101 466 168 HOH HOH . D 4 HOH A 102 468 170 HOH HOH . D 4 HOH A 103 473 175 HOH HOH . D 4 HOH A 104 480 182 HOH HOH . D 4 HOH A 105 481 183 HOH HOH . D 4 HOH A 106 483 185 HOH HOH . D 4 HOH A 107 486 188 HOH HOH . D 4 HOH A 108 490 192 HOH HOH . D 4 HOH A 109 495 197 HOH HOH . D 4 HOH A 110 497 199 HOH HOH . D 4 HOH A 111 498 200 HOH HOH . D 4 HOH A 112 501 203 HOH HOH . D 4 HOH A 113 506 208 HOH HOH . D 4 HOH A 114 507 209 HOH HOH . D 4 HOH A 115 510 212 HOH HOH . D 4 HOH A 116 512 214 HOH HOH . D 4 HOH A 117 513 215 HOH HOH . D 4 HOH A 118 515 217 HOH HOH . D 4 HOH A 119 517 219 HOH HOH . D 4 HOH A 120 519 221 HOH HOH . D 4 HOH A 121 521 223 HOH HOH . D 4 HOH A 122 524 226 HOH HOH . D 4 HOH A 123 525 227 HOH HOH . D 4 HOH A 124 530 232 HOH HOH . D 4 HOH A 125 531 233 HOH HOH . D 4 HOH A 126 533 235 HOH HOH . D 4 HOH A 127 539 241 HOH HOH . D 4 HOH A 128 541 243 HOH HOH . D 4 HOH A 129 543 245 HOH HOH . D 4 HOH A 130 544 246 HOH HOH . D 4 HOH A 131 546 248 HOH HOH . D 4 HOH A 132 547 249 HOH HOH . D 4 HOH A 133 548 250 HOH HOH . D 4 HOH A 134 550 252 HOH HOH . D 4 HOH A 135 551 253 HOH HOH . D 4 HOH A 136 553 255 HOH HOH . D 4 HOH A 137 555 257 HOH HOH . D 4 HOH A 138 558 260 HOH HOH . D 4 HOH A 139 559 261 HOH HOH . D 4 HOH A 140 563 265 HOH HOH . D 4 HOH A 141 565 267 HOH HOH . D 4 HOH A 142 566 268 HOH HOH . D 4 HOH A 143 571 273 HOH HOH . D 4 HOH A 144 573 275 HOH HOH . D 4 HOH A 145 577 279 HOH HOH . D 4 HOH A 146 578 280 HOH HOH . D 4 HOH A 147 580 282 HOH HOH . D 4 HOH A 148 584 286 HOH HOH . D 4 HOH A 149 586 288 HOH HOH . D 4 HOH A 150 591 293 HOH HOH . D 4 HOH A 151 592 294 HOH HOH . D 4 HOH A 152 601 303 HOH HOH . D 4 HOH A 153 603 305 HOH HOH . D 4 HOH A 154 610 312 HOH HOH . D 4 HOH A 155 619 321 HOH HOH . D 4 HOH A 156 627 329 HOH HOH . D 4 HOH A 157 630 332 HOH HOH . D 4 HOH A 158 640 342 HOH HOH . D 4 HOH A 159 641 343 HOH HOH . D 4 HOH A 160 642 344 HOH HOH . D 4 HOH A 161 646 348 HOH HOH . D 4 HOH A 162 654 356 HOH HOH . D 4 HOH A 163 655 357 HOH HOH . D 4 HOH A 164 662 364 HOH HOH . D 4 HOH A 165 663 365 HOH HOH . D 4 HOH A 166 666 368 HOH HOH . D 4 HOH A 167 682 384 HOH HOH . D 4 HOH A 168 691 393 HOH HOH . D 4 HOH A 169 692 394 HOH HOH . D 4 HOH A 170 699 401 HOH HOH . D 4 HOH A 171 700 402 HOH HOH . D 4 HOH A 172 702 404 HOH HOH . D 4 HOH A 173 712 414 HOH HOH . D 4 HOH A 174 715 417 HOH HOH . D 4 HOH A 175 721 423 HOH HOH . D 4 HOH A 176 725 427 HOH HOH . D 4 HOH A 177 728 430 HOH HOH . D 4 HOH A 178 735 437 HOH HOH . D 4 HOH A 179 740 442 HOH HOH . D 4 HOH A 180 742 444 HOH HOH . D 4 HOH A 181 743 445 HOH HOH . D 4 HOH A 182 744 446 HOH HOH . D 4 HOH A 183 745 447 HOH HOH . D 4 HOH A 184 746 448 HOH HOH . D 4 HOH A 185 747 449 HOH HOH . D 4 HOH A 186 749 451 HOH HOH . D 4 HOH A 187 750 452 HOH HOH . D 4 HOH A 188 751 453 HOH HOH . D 4 HOH A 189 752 454 HOH HOH . D 4 HOH A 190 754 456 HOH HOH . D 4 HOH A 191 756 458 HOH HOH . D 4 HOH A 192 757 459 HOH HOH . D 4 HOH A 193 758 460 HOH HOH . D 4 HOH A 194 759 461 HOH HOH . D 4 HOH A 195 760 462 HOH HOH . D 4 HOH A 196 762 464 HOH HOH . D 4 HOH A 197 763 465 HOH HOH . D 4 HOH A 198 764 466 HOH HOH . D 4 HOH A 199 765 467 HOH HOH . D 4 HOH A 200 766 468 HOH HOH . D 4 HOH A 201 767 469 HOH HOH . D 4 HOH A 202 768 470 HOH HOH . D 4 HOH A 203 769 471 HOH HOH . D 4 HOH A 204 770 472 HOH HOH . D 4 HOH A 205 771 473 HOH HOH . D 4 HOH A 206 772 474 HOH HOH . D 4 HOH A 207 774 476 HOH HOH . D 4 HOH A 208 775 477 HOH HOH . D 4 HOH A 209 776 478 HOH HOH . D 4 HOH A 210 777 479 HOH HOH . D 4 HOH A 211 779 481 HOH HOH . D 4 HOH A 212 780 482 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 XA0 . . . C 3 -64.364 -10.417 24.101 1 27.66 ? N01 XA0 782 A 1 HETATM 2 N N02 XA0 . . . C 3 -66.846 -9.681 20.871 1 23.12 ? N02 XA0 782 A 1 HETATM 3 N N03 XA0 . . . C 3 -69.378 -8.423 25.017 1 32.08 ? N03 XA0 782 A 1 HETATM 4 C C04 XA0 . . . C 3 -67.811 -9.306 23.507 1 28.54 ? C04 XA0 782 A 1 HETATM 5 C C05 XA0 . . . C 3 -66.506 -9.834 23.237 1 26.8 ? C05 XA0 782 A 1 HETATM 6 C C06 XA0 . . . C 3 -65.557 -9.948 24.316 1 27.18 ? C06 XA0 782 A 1 HETATM 7 C C07 XA0 . . . C 3 -65.947 -9.547 25.627 1 28.24 ? C07 XA0 782 A 1 HETATM 8 C C08 XA0 . . . C 3 -67.228 -9.035 25.899 1 29.41 ? C08 XA0 782 A 1 HETATM 9 C C09 XA0 . . . C 3 -68.192 -8.897 24.829 1 30.24 ? C09 XA0 782 A 1 HETATM 10 C C10 XA0 . . . C 3 -66.188 -10.225 21.947 1 25.77 ? C10 XA0 782 A 1 HETATM 11 C C11 XA0 . . . C 3 -63.17 -10.044 24.916 1 30.76 ? C11 XA0 782 A 1 HETATM 12 C C12 XA0 . . . C 3 -62.944 -11.072 26.004 1 33.01 ? C12 XA0 782 A 1 HETATM 13 C C13 XA0 . . . C 3 -62.66 -10.649 27.333 1 35.66 ? C13 XA0 782 A 1 HETATM 14 C C14 XA0 . . . C 3 -62.455 -11.613 28.36 1 36.75 ? C14 XA0 782 A 1 HETATM 15 C C15 XA0 . . . C 3 -62.535 -13 28.058 1 36.56 ? C15 XA0 782 A 1 HETATM 16 C C16 XA0 . . . C 3 -62.823 -13.42 26.731 1 34.67 ? C16 XA0 782 A 1 HETATM 17 C C17 XA0 . . . C 3 -63.026 -12.459 25.706 1 33.16 ? C17 XA0 782 A 1 HETATM 18 O O18 XA0 . . . C 3 -65.338 -11.073 21.754 1 23.16 ? O18 XA0 782 A 1 HETATM 19 O O19 XA0 . . . C 3 -70.4 -8.862 24.307 1 32.95 ? O19 XA0 782 A 1 HETATM 20 O O20 XA0 . . . C 3 -69.594 -7.453 25.89 1 35.78 ? O20 XA0 782 A 1 HETATM 21 CL CL21 XA0 . . . C 3 -67.569 -8.599 27.535 1 31.11 ? CL21 XA0 782 A 1 HETATM 22 F F22 XA0 . . . C 3 -62.905 -14.7 26.451 1 34.22 ? F22 XA0 782 A 1 HETATM 23 F F23 XA0 . . . C 3 -62.195 -11.217 29.593 1 40.4 ? F23 XA0 782 A 1 HETATM 24 F F24 XA0 . . . C 3 -62.344 -13.905 29.013 1 36.93 ? F24 XA0 782 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #